Wall clock time and date at job start Mon Mar 30 2020 02:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.46891 * 2 1 4 4 C 1.53002 * 109.47373 * 240.00760 * 2 1 3 5 5 C 1.50690 * 109.47502 * 64.99639 * 4 2 1 6 6 H 1.08005 * 120.00108 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00143 * 179.73052 * 5 4 2 8 8 N 1.31519 * 120.00261 * 180.27702 * 7 5 4 9 9 Si 1.86799 * 120.00060 * 0.27225 * 7 5 4 10 10 H 1.48493 * 109.47098 * 90.00224 * 9 7 5 11 11 H 1.48500 * 109.47039 * 210.00371 * 9 7 5 12 12 H 1.48502 * 109.46713 * 330.00384 * 9 7 5 13 13 C 1.53001 * 109.47337 * 120.00059 * 2 1 3 14 14 H 1.09001 * 112.48785 * 50.05088 * 13 2 1 15 15 C 1.53037 * 113.14959 * 179.82685 * 13 2 1 16 16 C 1.53039 * 89.86900 * 148.15498 * 15 13 2 17 17 S 1.81425 * 113.14786 * 280.22767 * 13 2 1 18 18 O 1.42101 * 112.75221 * 324.26063 * 17 13 2 19 19 O 1.42094 * 112.75612 * 108.01221 * 17 13 2 20 20 H 1.09006 * 109.47446 * 54.63354 * 1 2 3 21 21 H 1.09001 * 109.46934 * 174.62721 * 1 2 3 22 22 H 1.08998 * 109.47182 * 294.62742 * 1 2 3 23 23 H 1.09001 * 109.46335 * 304.99376 * 4 2 1 24 24 H 1.09000 * 109.46978 * 184.99893 * 4 2 1 25 25 H 0.96997 * 120.00014 * 180.02562 * 8 7 5 26 26 H 1.09007 * 113.15355 * 263.40962 * 15 13 2 27 27 H 1.09002 * 113.15449 * 32.85309 * 15 13 2 28 28 H 1.08998 * 113.14695 * 82.35837 * 16 15 13 29 29 H 1.08998 * 113.15292 * 211.84380 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6414 0.0572 -2.4766 6 1 1.0799 0.9743 -2.3757 7 6 1.9977 -0.3988 -3.7280 8 7 1.6545 0.2833 -4.7988 9 14 2.9681 -1.9854 -3.9026 10 1 2.0290 -3.1289 -4.0261 11 1 3.8216 -1.9126 -5.1157 12 1 3.8251 -2.1757 -2.7049 13 6 2.0400 -0.7213 1.2492 14 1 1.5693 -1.6942 1.3903 15 6 3.5672 -0.7740 1.3321 16 6 3.4827 -0.7215 2.8592 17 16 1.9985 0.3149 2.7379 18 8 2.3001 1.6771 2.4680 19 8 0.9806 -0.0739 3.6500 20 1 -0.3634 0.5948 -0.8381 21 1 -0.3633 -1.0232 -0.0962 22 1 -0.3633 0.4282 0.9342 23 1 1.6054 -1.7197 -1.2952 24 1 3.1263 -0.7993 -1.2056 25 1 1.9048 -0.0377 -5.6792 26 1 3.9847 -1.7088 0.9578 27 1 4.0505 0.1016 0.8985 28 1 3.2900 -1.6944 3.3113 29 1 4.3277 -0.2080 3.3178 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260331288.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:16 Heat of formation + Delta-G solvation = -89.910782 kcal Electronic energy + Delta-G solvation = -13333.438877 eV Core-core repulsion = 10962.253528 eV Total energy + Delta-G solvation = -2371.185349 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.94763 -38.10783 -37.01973 -35.50265 -33.92118 -29.74634 -27.20594 -24.61465 -23.33710 -20.97799 -19.72763 -19.00719 -17.81010 -17.40525 -16.65487 -16.18251 -15.55378 -15.24864 -14.75427 -14.38226 -13.85828 -13.83586 -13.38138 -13.24224 -13.19392 -12.93202 -12.65806 -12.42471 -12.04909 -11.94585 -11.73980 -11.57734 -11.37671 -11.01898 -10.72136 -10.62622 -8.24252 -6.27399 -0.70422 1.19524 1.38315 1.40075 1.51447 2.39540 2.80592 3.11117 3.11552 3.43817 3.90136 3.92646 4.18028 4.29057 4.48225 4.59693 4.68231 4.81418 4.98939 5.06209 5.14042 5.19617 5.35495 5.46077 5.62808 5.72016 6.34330 6.81059 7.36287 8.92733 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.048629 B = 0.008623 C = 0.007989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.650778 B = 3246.454987 C = 3503.915460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.068 4.068 3 H 0.063 0.937 4 C 0.001 3.999 5 C -0.526 4.526 6 H 0.032 0.968 7 C -0.001 4.001 8 N -0.957 5.957 9 Si 0.949 3.051 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.236 1.236 13 C -0.550 4.550 14 H 0.168 0.832 15 C -0.103 4.103 16 C -0.556 4.556 17 S 2.388 3.612 18 O -0.954 6.954 19 O -0.965 6.965 20 H 0.045 0.955 21 H 0.068 0.932 22 H 0.052 0.948 23 H 0.024 0.976 24 H 0.032 0.968 25 H 0.264 0.736 26 H 0.122 0.878 27 H 0.098 0.902 28 H 0.170 0.830 29 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.169 -6.193 16.207 18.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.087 4.087 3 H 0.081 0.919 4 C -0.037 4.037 5 C -0.564 4.564 6 H 0.050 0.950 7 C -0.197 4.197 8 N -0.598 5.598 9 Si 0.772 3.228 10 H -0.195 1.195 11 H -0.217 1.217 12 H -0.159 1.159 13 C -0.659 4.659 14 H 0.186 0.814 15 C -0.142 4.142 16 C -0.688 4.688 17 S 2.575 3.425 18 O -0.951 6.951 19 O -0.962 6.962 20 H 0.065 0.935 21 H 0.087 0.913 22 H 0.071 0.929 23 H 0.042 0.958 24 H 0.050 0.950 25 H 0.072 0.928 26 H 0.140 0.860 27 H 0.117 0.883 28 H 0.188 0.812 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.510 -5.299 16.642 18.038 hybrid contribution 0.558 -0.873 -1.463 1.792 sum 5.068 -6.172 15.179 17.152 Atomic orbital electron populations 1.21880 0.95306 1.02793 1.00674 1.20756 0.95840 0.98544 0.93514 0.91889 1.19539 0.96904 0.95562 0.91699 1.21563 1.34398 1.08850 0.91602 0.95012 1.26045 0.97056 1.01114 0.95440 1.70091 1.49192 1.41720 0.98796 0.85678 0.79333 0.79175 0.78586 1.19495 1.21665 1.15884 1.31148 1.04072 1.15467 1.15256 0.81406 1.22053 0.92199 1.07054 0.92919 1.30559 1.19313 1.16287 1.02665 1.09141 0.79056 0.76320 0.77972 1.93640 1.84919 1.32075 1.84468 1.93549 1.56677 1.84812 1.61172 0.93537 0.91277 0.92913 0.95761 0.94960 0.92763 0.85985 0.88331 0.81222 0.83454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.33 8.90 71.98 0.64 -4.69 15 2 C -0.07 -2.45 2.06 -10.79 -0.02 -2.47 15 3 H 0.06 2.47 7.67 -2.39 -0.02 2.45 15 4 C 0.00 0.05 3.39 29.85 0.10 0.15 15 5 C -0.53 -29.53 9.03 25.60 0.23 -29.30 15 6 H 0.03 1.99 7.30 -2.91 -0.02 1.97 15 7 C 0.00 -0.04 5.47 84.65 0.46 0.42 15 8 N -0.96 -60.09 13.96 21.45 0.30 -59.79 15 9 Si 0.95 42.88 27.47 68.60 1.88 44.77 15 10 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15 11 H -0.29 -13.14 7.11 99.48 0.71 -12.43 15 12 H -0.24 -9.44 6.54 99.48 0.65 -8.79 15 13 C -0.55 -13.71 3.00 30.61 0.09 -13.62 15 14 H 0.17 3.33 8.14 -2.39 -0.02 3.31 15 15 C -0.10 -2.09 6.09 30.62 0.19 -1.90 15 16 C -0.56 -7.85 7.98 71.99 0.57 -7.27 15 17 S 2.39 56.57 7.05 -56.49 -0.40 56.17 15 18 O -0.95 -30.24 17.69 -127.88 -2.26 -32.50 15 19 O -0.97 -27.54 18.18 -127.88 -2.32 -29.87 15 20 H 0.05 1.91 7.11 -2.38 -0.02 1.90 15 21 H 0.07 2.25 8.14 -2.39 -0.02 2.23 15 22 H 0.05 1.59 8.03 -2.39 -0.02 1.57 15 23 H 0.02 1.01 7.58 -2.39 -0.02 0.99 15 24 H 0.03 1.33 6.30 -2.39 -0.02 1.31 15 25 H 0.26 15.50 8.31 -92.71 -0.77 14.73 15 26 H 0.12 2.16 8.14 -2.38 -0.02 2.14 15 27 H 0.10 2.20 8.12 -2.39 -0.02 2.18 15 28 H 0.17 1.49 8.14 -2.39 -0.02 1.47 15 29 H 0.15 1.44 8.14 -2.39 -0.02 1.42 15 Total: -1.00 -75.05 252.15 0.53 -74.51 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: 1.07 Total: 5.39 kcal Atomic # 6 Polarization: -60.95 SS G_CDS: 2.27 Total: -58.68 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: 0.30 Total: -59.79 kcal Atomic # 8 Polarization: -57.78 SS G_CDS: -4.59 Total: -62.37 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.88 Total: 44.77 kcal Atomic # 16 Polarization: 56.57 SS G_CDS: -0.40 Total: 56.17 kcal Total: -75.05 0.53 -74.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260331288.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.397 kcal (2) G-P(sol) polarization free energy of solvation -75.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds