Wall clock time and date at job start Mon Mar 30 2020 02:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46912 * 2 1 4 4 C 1.52996 * 109.47445 * 120.00270 * 2 1 3 5 5 C 1.50700 * 109.47113 * 295.00137 * 4 2 1 6 6 H 1.07999 * 119.99953 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00112 * 179.97438 * 5 4 2 8 8 N 1.31522 * 119.99688 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00335 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46639 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47027 * 119.99871 * 9 7 5 12 12 H 1.48504 * 109.47072 * 240.00106 * 9 7 5 13 13 C 1.53002 * 109.46898 * 240.00435 * 2 1 3 14 14 H 1.09002 * 112.49334 * 290.33258 * 13 2 1 15 15 C 1.53045 * 113.15083 * 60.10614 * 13 2 1 16 16 C 1.53041 * 89.86551 * 148.19055 * 15 13 2 17 17 S 1.81422 * 89.89378 * 327.10836 * 16 15 13 18 18 O 1.42108 * 112.75037 * 280.47274 * 17 16 15 19 19 O 1.42096 * 112.75573 * 136.72733 * 17 16 15 20 20 H 1.09007 * 109.46869 * 299.99747 * 1 2 3 21 21 H 1.08999 * 109.47488 * 59.99552 * 1 2 3 22 22 H 1.08996 * 109.46912 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46704 * 55.00101 * 4 2 1 24 24 H 1.09001 * 109.47488 * 174.99691 * 4 2 1 25 25 H 0.97005 * 119.99503 * 179.97438 * 8 7 5 26 26 H 1.09000 * 113.15234 * 263.44910 * 15 13 2 27 27 H 1.09007 * 113.14817 * 32.89620 * 15 13 2 28 28 H 1.09008 * 113.14334 * 82.36567 * 16 15 13 29 29 H 1.08993 * 113.14785 * 211.80557 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6414 0.0569 2.4765 6 1 1.0807 0.9744 2.3757 7 6 1.9925 -0.4024 3.7282 8 7 2.6749 -1.5200 3.8510 9 14 1.4989 0.5626 5.2497 10 1 0.7435 1.7748 4.8434 11 1 0.6443 -0.2860 6.1183 12 1 2.7173 0.9664 5.9965 13 6 2.0400 -0.7212 -1.2493 14 1 1.8490 -1.7939 -1.2187 15 6 1.5793 -0.0651 -2.5530 16 6 2.8785 -0.5070 -3.2303 17 16 3.7605 -0.3143 -1.6567 18 8 4.0874 1.0390 -1.3720 19 8 4.6557 -1.3860 -1.3936 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 1.6054 -1.7199 1.2950 24 1 3.1264 -0.7995 1.2055 25 1 2.9222 -1.8429 4.7317 26 1 0.6926 -0.5345 -2.9790 27 1 1.4818 1.0179 -2.4766 28 1 2.8492 -1.5385 -3.5816 29 1 3.2177 0.1862 -4.0000 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260331292.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:17 Heat of formation + Delta-G solvation = -93.788327 kcal Electronic energy + Delta-G solvation = -13351.164997 eV Core-core repulsion = 10979.811505 eV Total energy + Delta-G solvation = -2371.353492 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.90346 -38.06965 -36.97441 -35.65036 -33.74264 -29.02019 -27.34015 -25.18932 -23.14060 -21.07696 -19.71170 -18.63957 -17.77338 -17.42024 -16.64014 -16.54360 -15.43688 -15.08576 -14.45224 -14.30874 -14.13535 -13.38820 -13.30536 -13.18104 -13.11341 -12.96563 -12.74412 -12.34395 -12.25179 -12.16000 -11.80381 -11.44221 -11.21394 -10.91675 -10.69955 -10.56846 -8.21428 -6.31925 -0.68073 1.27504 1.38377 1.39678 1.52458 2.39690 2.87302 3.11116 3.12733 3.42928 3.94315 3.98443 4.27002 4.30147 4.59225 4.66210 4.80425 4.83623 5.02527 5.14171 5.22966 5.32315 5.42003 5.48347 5.69841 5.82098 6.21795 6.84380 7.37329 8.91075 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.043284 B = 0.008854 C = 0.008113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.733764 B = 3161.761660 C = 3450.613136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.071 4.071 3 H 0.066 0.934 4 C 0.015 3.985 5 C -0.534 4.534 6 H 0.067 0.933 7 C -0.005 4.005 8 N -0.936 5.936 9 Si 0.964 3.036 10 H -0.258 1.258 11 H -0.277 1.277 12 H -0.282 1.282 13 C -0.547 4.547 14 H 0.153 0.847 15 C -0.087 4.087 16 C -0.549 4.549 17 S 2.358 3.642 18 O -0.956 6.956 19 O -0.984 6.984 20 H 0.044 0.956 21 H 0.079 0.921 22 H 0.049 0.951 23 H 0.004 0.996 24 H -0.022 1.022 25 H 0.263 0.737 26 H 0.137 0.863 27 H 0.111 0.889 28 H 0.166 0.834 29 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.051 2.661 -15.452 16.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.090 4.090 3 H 0.085 0.915 4 C -0.022 4.022 5 C -0.572 4.572 6 H 0.086 0.914 7 C -0.202 4.202 8 N -0.577 5.577 9 Si 0.788 3.212 10 H -0.182 1.182 11 H -0.202 1.202 12 H -0.208 1.208 13 C -0.658 4.658 14 H 0.171 0.829 15 C -0.127 4.127 16 C -0.682 4.682 17 S 2.547 3.453 18 O -0.953 6.953 19 O -0.981 6.981 20 H 0.063 0.937 21 H 0.097 0.903 22 H 0.068 0.932 23 H 0.022 0.978 24 H -0.004 1.004 25 H 0.072 0.928 26 H 0.155 0.845 27 H 0.130 0.870 28 H 0.184 0.816 29 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.839 2.802 -14.825 15.353 hybrid contribution -0.661 -0.199 0.989 1.206 sum -3.500 2.604 -13.836 14.507 Atomic orbital electron populations 1.21599 0.92975 1.01610 1.01649 1.20902 0.98820 0.98011 0.91271 0.91530 1.19251 0.93810 0.95739 0.93410 1.21684 1.34824 1.08782 0.91897 0.91447 1.26024 0.95145 0.96109 1.02956 1.70122 1.40140 1.22992 1.24439 0.85414 0.78063 0.78961 0.78739 1.18200 1.20217 1.20801 1.31066 1.22134 1.10107 1.02523 0.82944 1.22116 0.99033 1.02485 0.89024 1.30536 1.07298 1.12885 1.17522 1.09890 0.78300 0.73949 0.83140 1.93611 1.84183 1.34241 1.83274 1.93527 1.65089 1.55683 1.83767 0.93733 0.90267 0.93217 0.97776 1.00356 0.92804 0.84483 0.87050 0.81564 0.82891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.97 8.80 71.98 0.63 -3.33 15 2 C -0.07 -2.74 2.05 -10.79 -0.02 -2.76 15 3 H 0.07 2.64 7.68 -2.39 -0.02 2.62 15 4 C 0.01 0.79 4.43 29.85 0.13 0.92 15 5 C -0.53 -30.44 8.41 25.60 0.22 -30.23 15 6 H 0.07 3.65 7.06 -2.91 -0.02 3.63 15 7 C 0.00 -0.29 5.46 84.65 0.46 0.17 15 8 N -0.94 -58.52 13.29 21.45 0.28 -58.24 15 9 Si 0.96 45.07 29.54 68.60 2.03 47.10 15 10 H -0.26 -11.38 7.11 99.48 0.71 -10.68 15 11 H -0.28 -12.51 7.11 99.48 0.71 -11.81 15 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 15 13 C -0.55 -15.68 3.00 30.61 0.09 -15.59 15 14 H 0.15 4.08 8.14 -2.39 -0.02 4.06 15 15 C -0.09 -1.53 6.20 30.62 0.19 -1.35 15 16 C -0.55 -8.61 7.98 72.00 0.57 -8.03 15 17 S 2.36 72.67 7.03 -56.49 -0.40 72.28 15 18 O -0.96 -35.97 17.70 -127.88 -2.26 -38.24 15 19 O -0.98 -38.91 18.18 -127.88 -2.32 -41.24 15 20 H 0.04 1.64 6.95 -2.38 -0.02 1.62 15 21 H 0.08 1.92 7.43 -2.39 -0.02 1.90 15 22 H 0.05 1.60 8.14 -2.39 -0.02 1.58 15 23 H 0.00 0.21 8.14 -2.38 -0.02 0.20 15 24 H -0.02 -1.27 8.02 -2.39 -0.02 -1.29 15 25 H 0.26 15.42 8.31 -92.70 -0.77 14.65 15 26 H 0.14 1.66 8.14 -2.39 -0.02 1.64 15 27 H 0.11 1.84 8.12 -2.38 -0.02 1.82 15 28 H 0.17 1.87 8.14 -2.38 -0.02 1.85 15 29 H 0.15 1.54 8.14 -2.39 -0.02 1.52 15 Total: -1.00 -78.28 255.80 0.72 -77.55 By element: Atomic # 1 Polarization: -0.14 SS G_CDS: 1.12 Total: 0.98 kcal Atomic # 6 Polarization: -62.48 SS G_CDS: 2.28 Total: -60.20 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 0.28 Total: -58.24 kcal Atomic # 8 Polarization: -74.88 SS G_CDS: -4.59 Total: -79.47 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 16 Polarization: 72.67 SS G_CDS: -0.40 Total: 72.28 kcal Total: -78.28 0.72 -77.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260331292.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.236 kcal (2) G-P(sol) polarization free energy of solvation -78.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds