Wall clock time and date at job start Mon Mar 30 2020 02:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39455 * 126.63054 * 2 1 4 4 C 1.41281 * 126.17940 * 0.03855 * 3 2 1 5 5 H 1.07996 * 120.00316 * 359.97404 * 4 3 2 6 6 C 1.39719 * 119.99943 * 179.97438 * 4 3 2 7 7 N 1.30987 * 120.00161 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00144 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47072 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47392 * 120.00342 * 8 6 4 11 11 H 1.48508 * 109.47382 * 240.00298 * 8 6 4 12 12 N 1.34748 * 107.63881 * 180.02562 * 3 2 1 13 13 C 1.32542 * 109.15985 * 0.02562 * 12 3 2 14 14 C 1.41066 * 131.55473 * 179.97438 * 13 12 3 15 15 C 1.35975 * 119.50471 * 180.02562 * 14 13 12 16 16 C 1.40872 * 119.72358 * 0.02562 * 15 14 13 17 17 O 1.36039 * 119.90928 * 180.02562 * 16 15 14 18 18 C 1.35307 * 120.18695 * 359.97438 * 16 15 14 19 19 N 1.36120 * 126.63684 * 180.02562 * 2 1 3 20 20 H 1.09004 * 109.46549 * 89.97320 * 1 2 3 21 21 H 1.08997 * 109.46865 * 209.97028 * 1 2 3 22 22 H 1.08994 * 109.47331 * 329.97601 * 1 2 3 23 23 H 0.96998 * 119.99854 * 179.97438 * 7 6 4 24 24 H 1.08004 * 120.25022 * 359.97438 * 14 13 12 25 25 H 1.07994 * 120.14200 * 179.72448 * 15 14 13 26 26 H 0.96703 * 114.00556 * 89.99242 * 17 16 15 27 27 H 1.07997 * 119.71277 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3391 1.1191 0.0000 4 6 1.9215 2.4688 0.0008 5 1 0.8685 2.7083 0.0010 6 6 2.8710 3.4938 0.0012 7 7 4.1483 3.2034 0.0004 8 14 2.3190 5.2784 0.0015 9 1 0.8352 5.3375 0.0018 10 1 2.8413 5.9579 1.2142 11 1 2.8417 5.9585 -1.2108 12 7 3.6132 0.6806 -0.0006 13 6 3.6171 -0.6448 -0.0015 14 6 4.6755 -1.5774 -0.0028 15 6 4.3955 -2.9081 -0.0041 16 6 3.0545 -3.3397 -0.0046 17 8 2.7701 -4.6700 -0.0053 18 6 2.0486 -2.4348 -0.0033 19 7 2.3193 -1.0923 -0.0005 20 1 -0.3632 0.0005 -1.0277 21 1 -0.3633 -0.8902 0.5134 22 1 -0.3634 0.8897 0.5142 23 1 4.8074 3.9150 0.0003 24 1 5.7005 -1.2372 -0.0037 25 1 5.1977 -3.6310 -0.0096 26 1 2.6878 -5.0552 0.8778 27 1 1.0233 -2.7742 -0.0033 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260347847.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:03 Heat of formation + Delta-G solvation = 11.769256 kcal Electronic energy + Delta-G solvation = -14081.973440 eV Core-core repulsion = 11612.046068 eV Total energy + Delta-G solvation = -2469.927372 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.93971 -39.40775 -36.62696 -34.97796 -34.28105 -31.78561 -29.96852 -28.11315 -26.67745 -23.64540 -22.94493 -21.63790 -19.29786 -18.86622 -17.72069 -17.08814 -16.55144 -16.50516 -15.81956 -15.46490 -14.66069 -14.46963 -13.84684 -13.64964 -13.29518 -13.11473 -13.00949 -12.68677 -12.38124 -12.10004 -11.82199 -11.58081 -11.48906 -10.99059 -10.14800 -9.26540 -8.37058 -8.32022 -6.27622 0.05220 0.59696 1.40860 1.42056 1.58405 2.06802 2.24545 2.29396 2.82355 3.35869 3.60167 3.72786 3.92696 4.20564 4.34818 4.55408 4.69813 4.89057 4.90208 5.14543 5.17142 5.30055 5.34506 5.55384 5.65132 5.92676 6.25702 6.64373 6.85326 6.95350 7.06319 7.84119 8.57709 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.053644 B = 0.008304 C = 0.007224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.832022 B = 3370.980994 C = 3875.112891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 C -0.235 4.235 3 C 0.197 3.803 4 C -0.470 4.470 5 H 0.093 0.907 6 C 0.022 3.978 7 N -0.801 5.801 8 Si 0.991 3.009 9 H -0.250 1.250 10 H -0.270 1.270 11 H -0.270 1.270 12 N -0.522 5.522 13 C 0.163 3.837 14 C -0.098 4.098 15 C -0.125 4.125 16 C 0.058 3.942 17 O -0.486 6.486 18 C 0.007 3.993 19 N -0.338 5.338 20 H 0.053 0.947 21 H 0.064 0.936 22 H 0.068 0.932 23 H 0.275 0.725 24 H 0.148 0.852 25 H 0.170 0.830 26 H 0.407 0.593 27 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.286 -9.192 1.802 9.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.346 4.346 3 C 0.070 3.930 4 C -0.504 4.504 5 H 0.111 0.889 6 C -0.195 4.195 7 N -0.426 5.426 8 Si 0.812 3.188 9 H -0.173 1.173 10 H -0.195 1.195 11 H -0.196 1.196 12 N -0.247 5.247 13 C -0.077 4.077 14 C -0.119 4.119 15 C -0.149 4.149 16 C 0.009 3.991 17 O -0.296 6.296 18 C -0.118 4.118 19 N -0.012 5.012 20 H 0.072 0.928 21 H 0.082 0.918 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.165 0.835 25 H 0.187 0.813 26 H 0.265 0.735 27 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.437 -8.516 1.201 8.939 hybrid contribution -0.583 0.284 0.451 0.790 sum -3.020 -8.232 1.652 8.923 Atomic orbital electron populations 1.19656 0.85656 1.02014 1.00960 1.21791 0.94819 0.84532 1.33472 1.18872 0.86748 0.93679 0.93681 1.19111 0.94853 0.88440 1.47972 0.88911 1.26916 0.94357 1.05925 0.92301 1.70243 1.02326 1.35418 1.34604 0.85033 0.79916 0.75487 0.78410 1.17281 1.19455 1.19555 1.71569 1.22809 1.03856 1.26487 1.22093 0.84928 0.92507 1.08143 1.20210 0.97025 0.91043 1.03659 1.21348 0.96909 0.94768 1.01836 1.17237 0.90650 0.83945 1.07301 1.84857 1.92728 1.16708 1.35326 1.21959 1.01994 0.80983 1.06911 1.42295 1.08634 1.05032 1.45252 0.92819 0.91758 0.91275 0.91469 0.83459 0.81282 0.73474 0.81063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.96 10.08 71.24 0.72 -0.25 15 2 C -0.24 -11.78 7.15 42.19 0.30 -11.48 15 3 C 0.20 11.55 6.66 39.74 0.26 11.82 15 4 C -0.47 -26.79 9.11 23.38 0.21 -26.58 15 5 H 0.09 4.86 7.31 -2.91 -0.02 4.84 15 6 C 0.02 1.18 5.49 85.18 0.47 1.65 15 7 N -0.80 -46.91 11.93 21.79 0.26 -46.65 15 8 Si 0.99 40.51 29.56 68.60 2.03 42.54 15 9 H -0.25 -9.56 7.11 99.48 0.71 -8.85 15 10 H -0.27 -10.63 7.11 99.48 0.71 -9.93 15 11 H -0.27 -10.72 7.11 99.48 0.71 -10.01 15 12 N -0.52 -31.47 9.53 -186.56 -1.78 -33.25 15 13 C 0.16 8.37 7.77 134.08 1.04 9.42 15 14 C -0.10 -3.94 10.10 22.44 0.23 -3.71 15 15 C -0.13 -3.94 10.01 22.39 0.22 -3.72 15 16 C 0.06 1.80 6.66 22.24 0.15 1.95 15 17 O -0.49 -11.25 13.50 -94.00 -1.27 -12.52 15 18 C 0.01 0.26 10.74 83.22 0.89 1.15 15 19 N -0.34 -15.73 2.93 -334.93 -0.98 -16.71 15 20 H 0.05 1.93 8.14 -2.39 -0.02 1.91 15 21 H 0.06 2.06 8.13 -2.39 -0.02 2.04 15 22 H 0.07 2.63 7.57 -2.39 -0.02 2.61 15 23 H 0.28 14.65 8.30 -92.71 -0.77 13.88 15 24 H 0.15 5.49 8.06 -2.91 -0.02 5.47 15 25 H 0.17 3.91 8.06 -2.91 -0.02 3.89 15 26 H 0.41 5.00 9.07 -74.06 -0.67 4.33 15 27 H 0.17 5.07 8.04 -2.91 -0.02 5.05 15 Total: -1.00 -74.42 245.21 3.29 -71.12 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.53 Total: 15.23 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: 4.50 Total: -19.76 kcal Atomic # 7 Polarization: -94.11 SS G_CDS: -2.50 Total: -96.61 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -1.27 Total: -12.52 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Total: -74.42 3.29 -71.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260347847.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.894 kcal (2) G-P(sol) polarization free energy of solvation -74.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds