Wall clock time and date at job start Mon Mar 30 2020 02:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36531 * 120.10631 * 2 1 4 4 C 1.38907 * 120.61622 * 179.74543 * 3 2 1 5 5 C 1.37642 * 120.65195 * 0.23724 * 4 3 2 6 6 C 1.39271 * 119.73169 * 0.02562 * 5 4 3 7 7 N 1.37103 * 133.73570 * 179.97438 * 6 5 4 8 8 H 0.97003 * 125.40370 * 0.02562 * 7 6 5 9 9 N 1.39850 * 109.19016 * 180.02562 * 7 6 5 10 10 C 1.30716 * 110.03236 * 0.02562 * 9 7 6 11 11 O 1.35708 * 126.17370 * 179.97438 * 10 9 7 12 12 C 1.34799 * 116.99826 * 0.03128 * 11 10 9 13 13 H 1.07994 * 120.00257 * 359.97438 * 12 11 10 14 14 C 1.38621 * 119.99501 * 179.97438 * 12 11 10 15 15 N 1.31576 * 120.00235 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99594 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47316 * 60.00128 * 16 14 12 18 18 H 1.48499 * 109.46869 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47438 * 300.00129 * 16 14 12 20 20 C 1.39752 * 120.10027 * 180.25629 * 2 1 3 21 21 H 1.08998 * 109.47424 * 89.99244 * 1 2 3 22 22 H 1.09006 * 109.47239 * 209.99605 * 1 2 3 23 23 H 1.09000 * 109.46699 * 329.99399 * 1 2 3 24 24 H 1.08002 * 119.69468 * 0.03227 * 3 2 1 25 25 H 1.07998 * 119.67470 * 180.26057 * 4 3 2 26 26 H 1.08001 * 120.13767 * 180.02562 * 5 4 3 27 27 H 0.96996 * 119.99835 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1918 1.1811 0.0000 4 6 3.5808 1.1935 0.0053 5 6 4.2931 0.0157 0.0058 6 6 3.6156 -1.2012 0.0003 7 7 4.0201 -2.5112 -0.0012 8 1 4.9414 -2.8149 0.0019 9 7 2.8937 -3.3400 -0.0081 10 6 1.8052 -2.6163 -0.0114 11 8 0.5317 -3.0850 -0.0186 12 6 0.3723 -4.4236 -0.0221 13 1 1.2371 -5.0704 -0.0195 14 6 -0.9018 -4.9697 -0.0289 15 7 -1.9554 -4.1817 -0.0315 16 14 -1.1227 -6.8246 -0.0344 17 1 -0.4914 -7.4019 1.1794 18 1 -2.5714 -7.1505 -0.0421 19 1 -0.4809 -7.3960 -1.2455 20 6 2.2079 -1.2091 -0.0054 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3634 -0.8901 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.6486 2.1146 0.0005 25 1 4.1071 2.1366 0.0095 26 1 5.3729 0.0350 0.0103 27 1 -2.8469 -4.5639 -0.0367 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260382329.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:57 Heat of formation + Delta-G solvation = 52.070979 kcal Electronic energy + Delta-G solvation = -14041.951924 eV Core-core repulsion = 11573.772166 eV Total energy + Delta-G solvation = -2468.179758 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.47815 -37.42148 -36.35401 -32.62459 -31.93816 -29.38009 -28.89099 -26.12418 -25.26266 -21.96054 -21.36794 -20.26834 -17.85542 -16.89331 -15.93061 -15.51399 -14.75289 -14.60234 -14.29344 -13.72839 -13.00403 -12.90864 -12.74347 -12.39699 -11.81015 -11.64582 -11.07551 -11.03285 -10.76414 -10.62446 -10.49211 -10.15275 -9.39218 -9.14402 -8.45452 -8.02684 -7.06876 -6.38126 -4.00332 1.52275 2.03864 3.16309 3.18925 3.23124 3.48556 3.52882 4.01223 4.28742 4.76671 5.12450 5.12980 5.31416 5.57493 5.64920 5.80516 5.98645 6.23223 6.25137 6.33331 6.42151 6.72774 6.85899 7.02612 7.15326 7.35711 7.46498 7.97267 8.13852 8.60866 9.09762 9.71169 10.79728 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.045036 B = 0.008571 C = 0.007229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.579706 B = 3265.864528 C = 3872.295608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.016 3.984 3 C -0.193 4.193 4 C -0.065 4.065 5 C -0.176 4.176 6 C 0.152 3.848 7 N -0.517 5.517 8 H 0.431 0.569 9 N -0.342 5.342 10 C 0.290 3.710 11 O -0.155 6.155 12 C -0.384 4.384 13 H 0.095 0.905 14 C 0.039 3.961 15 N -0.869 5.869 16 Si 0.945 3.055 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.271 1.271 20 C -0.172 4.172 21 H 0.072 0.928 22 H 0.087 0.913 23 H 0.060 0.940 24 H 0.119 0.881 25 H 0.120 0.880 26 H 0.118 0.882 27 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.728 7.614 0.072 10.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.014 3.986 3 C -0.213 4.213 4 C -0.085 4.085 5 C -0.199 4.199 6 C 0.034 3.966 7 N -0.232 5.232 8 H 0.274 0.726 9 N -0.187 5.187 10 C 0.079 3.921 11 O -0.046 6.046 12 C -0.462 4.462 13 H 0.112 0.888 14 C -0.165 4.165 15 N -0.506 5.506 16 Si 0.770 3.230 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.196 1.196 20 C -0.181 4.181 21 H 0.091 0.909 22 H 0.106 0.894 23 H 0.079 0.921 24 H 0.137 0.863 25 H 0.138 0.862 26 H 0.136 0.864 27 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.472 6.537 0.071 9.928 hybrid contribution 0.216 -0.358 -0.021 0.419 sum 7.688 6.179 0.050 9.863 Atomic orbital electron populations 1.20884 0.90550 1.03418 1.02882 1.19244 0.96170 0.90741 0.92476 1.20360 0.93951 0.96943 1.10057 1.20777 0.93992 0.96722 0.97019 1.19861 0.98810 0.89403 1.11858 1.18795 0.93086 0.87092 0.97636 1.45441 1.07378 1.00781 1.69557 0.72639 1.76977 0.91356 1.15160 1.35176 1.22017 0.86888 0.88946 0.94291 1.84189 1.14291 1.25619 1.80508 1.21256 0.94169 0.78041 1.52686 0.88759 1.25239 0.94055 1.00464 0.96708 1.70030 0.98196 1.35241 1.47123 0.85718 0.77500 0.80593 0.79197 1.19591 1.20420 1.19599 1.19148 0.92073 0.91503 1.15398 0.90896 0.89408 0.92103 0.86323 0.86161 0.86386 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.24 9.86 36.00 0.36 -1.89 15 2 C 0.02 0.30 5.88 -104.67 -0.61 -0.31 15 3 C -0.19 -3.02 9.61 -39.95 -0.38 -3.40 15 4 C -0.06 -0.91 10.01 -39.55 -0.40 -1.31 15 5 C -0.18 -2.68 10.08 -39.42 -0.40 -3.08 15 6 C 0.15 2.91 7.33 -84.16 -0.62 2.29 15 7 N -0.52 -9.95 7.36 32.36 0.24 -9.71 15 8 H 0.43 6.43 8.96 -182.78 -1.64 4.79 15 9 N -0.34 -8.31 11.49 31.80 0.37 -7.94 15 10 C 0.29 7.46 7.95 -14.76 -0.12 7.35 15 11 O -0.15 -4.49 8.60 0.27 0.00 -4.49 15 12 C -0.38 -11.20 9.73 30.87 0.30 -10.90 15 13 H 0.09 2.70 7.05 -52.49 -0.37 2.33 15 14 C 0.04 1.09 5.49 -17.52 -0.10 1.00 15 15 N -0.87 -25.43 13.67 55.48 0.76 -24.67 15 16 Si 0.95 21.34 29.55 -169.99 -5.02 16.31 15 17 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 20 C -0.17 -3.79 6.14 -105.10 -0.65 -4.44 15 21 H 0.07 1.32 8.14 -51.93 -0.42 0.90 15 22 H 0.09 1.94 6.88 -51.93 -0.36 1.58 15 23 H 0.06 0.92 8.08 -51.93 -0.42 0.50 15 24 H 0.12 1.53 8.06 -52.49 -0.42 1.10 15 25 H 0.12 1.26 8.06 -52.49 -0.42 0.83 15 26 H 0.12 1.41 8.06 -52.49 -0.42 0.99 15 27 H 0.27 7.27 8.31 -40.82 -0.34 6.93 15 LS Contribution 245.70 15.07 3.70 3.70 Total: -1.00 -32.16 245.70 -6.18 -38.34 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -3.61 Total: 3.14 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -2.61 Total: -14.68 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 1.36 Total: -42.33 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: 0.00 Total: -4.49 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -32.16 -6.18 -38.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260382329.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.409 kcal (2) G-P(sol) polarization free energy of solvation -32.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds