Wall clock time and date at job start Mon Mar 30 2020 02:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40022 * 125.95818 * 2 1 4 4 C 1.30178 * 109.74010 * 179.80072 * 3 2 1 5 5 C 1.41444 * 108.66750 * 0.45272 * 4 3 2 6 6 C 1.37152 * 125.95896 * 180.30397 * 2 1 3 7 7 C 1.39267 * 133.68305 * 0.02562 * 6 2 1 8 8 C 1.37718 * 120.02512 * 179.97438 * 7 6 2 9 9 C 1.38739 * 120.68060 * 0.07162 * 8 7 6 10 10 C 1.38209 * 120.46066 * 359.96510 * 9 8 7 11 11 O 1.35610 * 120.21085 * 180.02562 * 10 9 8 12 12 C 1.34812 * 116.99788 * 354.39052 * 11 10 9 13 13 H 1.07998 * 120.00421 * 5.06615 * 12 11 10 14 14 C 1.38638 * 119.99572 * 185.06245 * 12 11 10 15 15 N 1.31558 * 120.00006 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99588 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47270 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47044 * 119.99948 * 16 14 12 19 19 H 1.48496 * 109.46987 * 240.00087 * 16 14 12 20 20 H 1.08997 * 109.47038 * 269.69435 * 1 2 3 21 21 H 1.08999 * 109.46559 * 29.69502 * 1 2 3 22 22 H 1.08998 * 109.47109 * 149.68971 * 1 2 3 23 23 H 1.08002 * 125.66816 * 180.14239 * 4 3 2 24 24 H 1.08007 * 119.98653 * 359.97438 * 7 6 2 25 25 H 1.07999 * 119.66055 * 180.02562 * 8 7 6 26 26 H 1.08002 * 119.77300 * 179.97438 * 9 8 7 27 27 H 0.97001 * 119.99807 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2872 1.1334 0.0000 4 6 3.5372 0.7698 0.0043 5 6 3.5976 -0.6433 -0.0033 6 6 2.2703 -1.1101 -0.0059 7 6 2.0200 -2.4801 -0.0136 8 6 3.0690 -3.3723 -0.0187 9 6 4.3813 -2.9221 -0.0148 10 6 4.6574 -1.5679 -0.0064 11 8 5.9420 -1.1335 -0.0031 12 6 6.9047 -2.0705 0.1091 13 1 6.6415 -3.1179 0.1087 14 6 8.2327 -1.6895 0.2248 15 7 8.5533 -0.4136 0.2257 16 14 9.5667 -2.9880 0.3795 17 1 8.9489 -4.3382 0.3518 18 1 10.5189 -2.8566 -0.7524 19 1 10.2927 -2.8014 1.6614 20 1 -0.3633 -0.0055 1.0276 21 1 -0.3632 0.8927 -0.5091 22 1 -0.3633 -0.8872 -0.5186 23 1 4.3869 1.4364 0.0075 24 1 1.0026 -2.8429 -0.0156 25 1 2.8681 -4.4335 -0.0251 26 1 5.1928 -3.6348 -0.0185 27 1 9.4824 -0.1471 0.3070 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260385797.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:42 Heat of formation + Delta-G solvation = 43.817002 kcal Electronic energy + Delta-G solvation = -13953.381309 eV Core-core repulsion = 11484.843632 eV Total energy + Delta-G solvation = -2468.537677 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.26749 -39.96177 -37.02719 -34.54439 -34.03018 -30.73597 -30.14201 -27.62875 -27.06310 -23.71067 -22.99668 -21.71497 -19.80252 -18.83981 -17.41034 -17.09589 -16.48237 -16.24538 -15.75592 -15.36543 -15.31439 -14.87478 -14.06179 -13.62823 -13.59426 -13.44404 -12.93878 -12.80102 -12.23521 -12.20991 -12.05429 -11.85584 -11.29614 -10.96784 -10.38839 -9.47071 -8.49531 -8.43142 -6.15391 0.16865 0.73022 1.38650 1.45943 1.56971 1.60473 1.63748 2.18016 2.81842 3.15802 3.30150 3.72848 3.96440 4.13382 4.28590 4.45674 4.49407 4.60535 4.68921 4.70881 4.95554 5.11842 5.21487 5.51441 5.59060 5.75499 5.98265 6.01690 6.32074 6.67949 6.95616 7.72503 8.73386 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.050565 B = 0.007898 C = 0.006863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.607162 B = 3544.128302 C = 4078.837629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.415 5.415 3 N -0.294 5.294 4 C 0.081 3.919 5 C -0.260 4.260 6 C 0.159 3.841 7 C -0.225 4.225 8 C -0.007 4.007 9 C -0.302 4.302 10 C 0.186 3.814 11 O -0.213 6.213 12 C -0.414 4.414 13 H 0.109 0.891 14 C -0.018 4.018 15 N -0.913 5.913 16 Si 1.021 2.979 17 H -0.248 1.248 18 H -0.269 1.269 19 H -0.270 1.270 20 H 0.081 0.919 21 H 0.094 0.906 22 H 0.107 0.893 23 H 0.186 0.814 24 H 0.155 0.845 25 H 0.162 0.838 26 H 0.127 0.873 27 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.886 -5.513 -0.189 13.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.204 5.204 3 N -0.110 5.110 4 C -0.112 4.112 5 C -0.269 4.269 6 C 0.042 3.958 7 C -0.248 4.248 8 C -0.028 4.028 9 C -0.323 4.323 10 C 0.131 3.869 11 O -0.116 6.116 12 C -0.490 4.490 13 H 0.126 0.874 14 C -0.217 4.217 15 N -0.550 5.550 16 Si 0.840 3.160 17 H -0.171 1.171 18 H -0.194 1.194 19 H -0.195 1.195 20 H 0.099 0.901 21 H 0.113 0.887 22 H 0.125 0.875 23 H 0.203 0.797 24 H 0.172 0.828 25 H 0.180 0.820 26 H 0.145 0.855 27 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.622 -4.108 -0.195 13.275 hybrid contribution 1.501 -0.655 0.063 1.639 sum -11.122 -4.763 -0.131 12.099 Atomic orbital electron populations 1.22056 0.71467 1.05629 1.04167 1.48579 1.06929 1.00621 1.64257 1.76545 1.01712 1.09958 1.22785 1.23831 0.95078 0.94083 0.98240 1.18422 0.92739 0.93712 1.21983 1.18881 0.88647 0.90814 0.97451 1.19985 1.00793 0.87312 1.16683 1.21007 0.90003 1.00451 0.91340 1.21004 0.98910 0.93698 1.18686 1.19272 0.83989 0.92810 0.90869 1.83868 1.11538 1.37368 1.78849 1.21986 0.85430 0.89088 1.52474 0.87403 1.26627 0.99682 0.99903 0.95466 1.70187 1.19812 1.17430 1.47549 0.84499 0.76125 0.76969 0.78442 1.17126 1.19418 1.19457 0.90073 0.88711 0.87467 0.79664 0.82778 0.82049 0.85513 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.22 11.45 127.77 1.46 3.68 15 2 N -0.42 -14.32 4.07 -361.08 -1.47 -15.79 15 3 N -0.29 -11.74 12.44 -56.31 -0.70 -12.45 15 4 C 0.08 3.58 12.04 85.73 1.03 4.61 15 5 C -0.26 -12.05 6.12 -21.30 -0.13 -12.18 15 6 C 0.16 6.10 6.88 39.16 0.27 6.37 15 7 C -0.22 -7.12 10.01 22.39 0.22 -6.90 15 8 C -0.01 -0.24 10.01 22.27 0.22 -0.02 15 9 C -0.30 -12.96 9.16 22.38 0.20 -12.75 15 10 C 0.19 9.40 6.69 22.85 0.15 9.56 15 11 O -0.21 -12.61 9.76 -21.01 -0.21 -12.81 15 12 C -0.41 -23.48 9.48 67.92 0.64 -22.84 15 13 H 0.11 5.57 5.21 -2.91 -0.02 5.56 15 14 C -0.02 -1.00 5.49 84.83 0.47 -0.53 15 15 N -0.91 -54.66 13.67 21.61 0.30 -54.36 15 16 Si 1.02 41.59 29.55 68.60 2.03 43.62 15 17 H -0.25 -9.25 7.11 99.48 0.71 -8.55 15 18 H -0.27 -10.56 7.11 99.48 0.71 -9.86 15 19 H -0.27 -10.60 7.11 99.48 0.71 -9.89 15 20 H 0.08 1.43 8.14 -2.39 -0.02 1.42 15 21 H 0.09 1.74 8.14 -2.39 -0.02 1.72 15 22 H 0.11 1.65 8.14 -2.39 -0.02 1.63 15 23 H 0.19 7.91 8.06 -2.91 -0.02 7.88 15 24 H 0.15 3.47 8.06 -2.91 -0.02 3.45 15 25 H 0.16 3.80 8.06 -2.91 -0.02 3.78 15 26 H 0.13 5.40 5.62 -2.91 -0.02 5.39 15 27 H 0.27 15.00 8.31 -92.71 -0.77 14.23 15 Total: -1.00 -71.73 245.88 5.69 -66.04 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 1.19 Total: 16.75 kcal Atomic # 6 Polarization: -35.55 SS G_CDS: 4.55 Total: -31.00 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -1.88 Total: -82.60 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.21 Total: -12.81 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -71.73 5.69 -66.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260385797.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.858 kcal (2) G-P(sol) polarization free energy of solvation -71.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds