Wall clock time and date at job start Mon Mar 30 2020 02:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30145 * 125.65084 * 2 1 4 4 N 1.40019 * 109.77613 * 180.02562 * 3 2 1 5 5 H 0.97009 * 125.95167 * 180.02562 * 4 3 2 6 6 C 1.37184 * 108.09062 * 0.02562 * 4 3 2 7 7 C 1.39120 * 133.74438 * 180.02562 * 6 4 3 8 8 C 1.38282 * 119.67703 * 179.97438 * 7 6 4 9 9 O 1.35715 * 119.78050 * 179.97438 * 8 7 6 10 10 C 1.34816 * 117.00002 * 174.43625 * 9 8 7 11 11 H 1.07999 * 120.00158 * 5.04406 * 10 9 8 12 12 C 1.38644 * 119.99982 * 185.05453 * 10 9 8 13 13 N 1.31562 * 119.99875 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00074 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46874 * 59.99592 * 14 12 10 16 16 H 1.48495 * 109.47232 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47101 * 300.00029 * 14 12 10 18 18 C 1.39604 * 120.44016 * 0.02562 * 8 7 6 19 19 C 1.36224 * 120.61989 * 0.02562 * 18 8 7 20 20 C 1.40186 * 119.93745 * 359.70218 * 19 18 8 21 21 H 1.08996 * 109.46854 * 90.02351 * 1 2 3 22 22 H 1.08997 * 109.47022 * 330.02351 * 1 2 3 23 23 H 1.09000 * 109.46373 * 210.02051 * 1 2 3 24 24 H 1.08007 * 120.16078 * 0.02562 * 7 6 4 25 25 H 0.97007 * 120.00013 * 180.02562 * 13 12 10 26 26 H 1.07993 * 119.69217 * 179.97438 * 18 8 7 27 27 H 1.07999 * 120.03351 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2656 1.0575 0.0000 4 7 3.6124 0.6745 -0.0006 5 1 4.3751 1.2741 -0.0004 6 6 3.6655 -0.6963 -0.0015 7 6 4.7070 -1.6186 -0.0020 8 6 4.4230 -2.9720 -0.0025 9 8 5.4373 -3.8736 -0.0034 10 6 5.1006 -5.1739 0.1126 11 1 4.0603 -5.4638 0.1188 12 6 6.0898 -6.1388 0.2242 13 7 7.3571 -5.7857 0.2163 14 14 5.6233 -7.9404 0.3857 15 1 4.8463 -8.3594 -0.8084 16 1 6.8550 -8.7635 0.4880 17 1 4.7975 -8.1305 1.6052 18 6 3.0997 -3.4170 -0.0031 19 6 2.0684 -2.5270 -0.0037 20 6 2.3324 -1.1503 0.0026 21 1 -0.3633 -0.0004 -1.0276 22 1 -0.3633 0.8902 0.5135 23 1 -0.3632 -0.8898 0.5142 24 1 5.7323 -1.2793 -0.0011 25 1 8.0493 -6.4609 0.2940 26 1 2.8918 -4.4767 -0.0038 27 1 1.0483 -2.8818 -0.0037 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260407325.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:49 Heat of formation + Delta-G solvation = 51.803445 kcal Electronic energy + Delta-G solvation = -13755.488085 eV Core-core repulsion = 11287.296725 eV Total energy + Delta-G solvation = -2468.191359 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.77032 -38.40136 -35.13313 -32.95395 -32.30709 -29.46319 -28.27082 -27.34105 -25.32192 -22.31239 -21.36835 -19.47689 -18.44666 -17.05965 -16.44013 -15.50079 -14.63336 -14.46209 -14.34459 -13.56324 -13.37348 -13.11058 -12.62436 -12.58972 -12.10316 -11.94944 -11.53418 -11.16779 -10.86218 -10.56367 -10.46130 -10.17607 -9.51415 -9.44048 -8.86305 -7.47129 -7.21666 -6.54369 -4.13009 1.67240 2.32681 3.03182 3.07995 3.12788 3.15354 3.23197 3.90525 4.49387 4.92654 5.02052 5.17745 5.23477 5.41619 5.71872 5.82955 5.95045 5.95270 6.15519 6.27689 6.41508 6.72136 6.89792 7.08004 7.21043 7.29907 7.55418 7.89670 7.91950 8.18459 8.90305 9.57232 10.62844 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.058713 B = 0.006827 C = 0.006142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.778940 B = 4100.101043 C = 4558.001713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.108 3.892 3 N -0.291 5.291 4 N -0.521 5.521 5 H 0.434 0.566 6 C 0.182 3.818 7 C -0.252 4.252 8 C 0.198 3.802 9 O -0.167 6.167 10 C -0.396 4.396 11 H 0.096 0.904 12 C 0.041 3.959 13 N -0.858 5.858 14 Si 0.944 3.056 15 H -0.269 1.269 16 H -0.277 1.277 17 H -0.268 1.268 18 C -0.234 4.234 19 C -0.009 4.009 20 C -0.253 4.253 21 H 0.075 0.925 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.119 0.881 25 H 0.272 0.728 26 H 0.135 0.865 27 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.406 4.905 -0.137 10.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.067 4.067 3 N -0.109 5.109 4 N -0.237 5.237 5 H 0.277 0.723 6 C 0.066 3.934 7 C -0.277 4.277 8 C 0.141 3.859 9 O -0.068 6.068 10 C -0.472 4.472 11 H 0.113 0.887 12 C -0.164 4.164 13 N -0.492 5.492 14 Si 0.768 3.232 15 H -0.194 1.194 16 H -0.202 1.202 17 H -0.193 1.193 18 C -0.254 4.254 19 C -0.029 4.029 20 C -0.261 4.261 21 H 0.094 0.906 22 H 0.089 0.911 23 H 0.095 0.905 24 H 0.137 0.863 25 H 0.082 0.918 26 H 0.152 0.848 27 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.880 6.061 -0.139 10.752 hybrid contribution 0.381 -1.432 0.066 1.483 sum -8.499 4.629 -0.073 9.678 Atomic orbital electron populations 1.20171 0.87017 1.03069 1.02772 1.22139 0.96241 0.89807 0.98515 1.76417 0.87267 1.23329 1.23859 1.45730 1.05373 1.03520 1.69038 0.72251 1.18336 0.94895 0.84087 0.96038 1.18630 0.96963 0.89206 1.22897 1.18971 0.87751 0.89266 0.89960 1.83959 1.29789 1.16246 1.76768 1.21362 0.94507 0.78690 1.52636 0.88706 1.25336 0.94568 1.00296 0.96214 1.70035 0.99308 1.34952 1.44922 0.85739 0.78230 0.79938 0.79319 1.19356 1.20226 1.19342 1.20886 0.92175 1.00642 1.11695 1.19998 0.98198 0.90269 0.94475 1.18457 0.91879 0.94144 1.21625 0.90604 0.91073 0.90490 0.86273 0.91762 0.84793 0.86605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.44 36.01 0.38 -0.46 15 2 C 0.11 1.81 7.23 -82.03 -0.59 1.22 15 3 N -0.29 -5.16 12.57 33.91 0.43 -4.73 15 4 N -0.52 -9.15 7.44 32.36 0.24 -8.91 15 5 H 0.43 6.19 8.96 -182.65 -1.64 4.55 15 6 C 0.18 3.64 7.33 -84.16 -0.62 3.03 15 7 C -0.25 -5.50 10.01 -39.24 -0.39 -5.89 15 8 C 0.20 4.73 6.64 -39.06 -0.26 4.47 15 9 O -0.17 -4.64 9.74 0.20 0.00 -4.64 15 10 C -0.40 -10.66 9.48 30.88 0.29 -10.37 15 11 H 0.10 2.32 5.17 -52.49 -0.27 2.04 15 12 C 0.04 1.10 5.49 -17.52 -0.10 1.00 15 13 N -0.86 -24.51 13.67 55.48 0.76 -23.75 15 14 Si 0.94 19.76 29.55 -169.99 -5.02 14.73 15 15 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 16 H -0.28 -5.71 7.11 56.52 0.40 -5.30 15 17 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 18 C -0.23 -4.90 9.08 -39.80 -0.36 -5.27 15 19 C -0.01 -0.16 10.04 -39.57 -0.40 -0.55 15 20 C -0.25 -4.81 6.11 -106.92 -0.65 -5.47 15 21 H 0.08 0.78 8.14 -51.93 -0.42 0.35 15 22 H 0.07 0.74 8.14 -51.93 -0.42 0.32 15 23 H 0.08 0.78 8.14 -51.93 -0.42 0.36 15 24 H 0.12 2.50 8.06 -52.48 -0.42 2.08 15 25 H 0.27 7.14 8.31 -40.82 -0.34 6.80 15 26 H 0.13 2.71 5.59 -52.49 -0.29 2.41 15 27 H 0.12 1.68 8.06 -52.49 -0.42 1.25 15 LS Contribution 244.74 15.07 3.69 3.69 Total: -1.00 -31.03 244.74 -6.06 -37.09 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -3.45 Total: 4.81 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -2.70 Total: -18.29 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 1.43 Total: -37.40 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: 0.00 Total: -4.64 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.03 -6.06 -37.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260407325.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.892 kcal (2) G-P(sol) polarization free energy of solvation -31.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds