Wall clock time and date at job start Mon Mar 30 2020 02:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47054 * 305.92545 * 3 2 1 5 5 C 1.50698 * 109.47151 * 65.92138 * 3 2 1 6 6 H 1.08006 * 119.99718 * 63.98620 * 5 3 2 7 7 C 1.37877 * 120.00458 * 243.97935 * 5 3 2 8 8 N 1.31512 * 119.99567 * 7.23499 * 7 5 3 9 9 Si 1.86801 * 120.00478 * 187.23224 * 7 5 3 10 10 H 1.48500 * 109.47309 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.46717 * 60.00103 * 9 7 5 12 12 H 1.48500 * 109.47109 * 300.00314 * 9 7 5 13 13 C 1.53003 * 109.47379 * 185.92763 * 3 2 1 14 14 H 1.09004 * 113.40174 * 309.66125 * 13 3 2 15 15 C 1.55881 * 114.37983 * 83.29570 * 13 3 2 16 16 C 1.55977 * 102.90882 * 137.57477 * 15 13 3 17 17 S 1.83087 * 82.46107 * 335.83493 * 16 15 13 18 18 O 1.42098 * 111.36236 * 269.55150 * 17 16 15 19 19 O 1.42099 * 111.36341 * 130.43234 * 17 16 15 20 20 H 1.08994 * 109.47371 * 304.56031 * 1 2 3 21 21 H 1.09002 * 109.46924 * 64.56029 * 1 2 3 22 22 H 1.08994 * 109.46585 * 184.55284 * 1 2 3 23 23 H 1.08998 * 109.47852 * 239.99905 * 2 1 3 24 24 H 1.08999 * 109.47040 * 119.99336 * 2 1 3 25 25 H 0.97003 * 120.00634 * 355.28428 * 8 7 5 26 26 H 1.08999 * 110.82070 * 256.13013 * 15 13 3 27 27 H 1.08996 * 110.82363 * 19.06613 * 15 13 3 28 28 H 1.08989 * 114.40077 * 222.43133 * 16 15 13 29 29 H 1.09002 * 114.34575 * 89.23524 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5926 1.9861 -0.8322 5 6 1.6610 2.1093 1.2972 6 1 2.0672 1.7464 2.2298 7 6 0.7957 3.1828 1.2935 8 7 0.1907 3.5358 0.1804 9 14 0.4828 4.1358 2.8693 10 1 -0.4797 5.2343 2.6007 11 1 1.7610 4.7070 3.3644 12 1 -0.0820 3.2233 3.8958 13 6 3.5628 1.4451 -0.1490 14 1 4.0676 0.7813 0.5529 15 6 4.0656 1.3291 -1.6199 16 6 5.2302 2.3653 -1.6728 17 16 4.3065 3.1131 -0.2801 18 8 3.3594 4.0673 -0.7401 19 8 5.1619 3.3863 0.8212 20 1 -0.3634 0.5829 0.8462 21 1 -0.3633 0.4415 -0.9280 22 1 -0.3632 -1.0244 0.0816 23 1 1.8935 -0.5138 -0.8899 24 1 1.8933 -0.5137 0.8900 25 1 0.4043 3.0853 -0.6517 26 1 4.4314 0.3233 -1.8261 27 1 3.2760 1.5977 -2.3216 28 1 5.2511 2.9735 -2.5769 29 1 6.2048 1.9602 -1.4003 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260459897.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:17 Heat of formation + Delta-G solvation = -66.740993 kcal Electronic energy + Delta-G solvation = -13801.394755 eV Core-core repulsion = 11431.214124 eV Total energy + Delta-G solvation = -2370.180632 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -36.87897 -36.10035 -35.13614 -33.85038 -31.51364 -28.38247 -24.85605 -23.04918 -21.48792 -20.01033 -17.90821 -16.83478 -16.18241 -15.63147 -15.16325 -14.09341 -13.84022 -13.69199 -13.00230 -12.62764 -12.43769 -12.20654 -11.59300 -11.31717 -11.25330 -11.15543 -10.82065 -10.75162 -10.48717 -10.15309 -10.03892 -9.72295 -9.55409 -9.07216 -8.59302 -8.28567 -6.40555 -4.16326 0.78830 3.18607 3.44350 3.50929 3.66038 4.20797 4.49850 4.60419 4.65449 4.81508 5.31169 5.43254 5.56618 5.73000 5.95500 6.08128 6.11377 6.27138 6.29013 6.62460 6.77841 6.88573 7.10831 7.31308 7.37955 8.09049 8.38016 8.83173 9.58344 10.98341 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.027280 B = 0.015744 C = 0.011579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.132026 B = 1778.073401 C = 2417.529247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 C 0.055 3.945 4 H 0.060 0.940 5 C -0.627 4.627 6 H 0.056 0.944 7 C 0.038 3.962 8 N -0.879 5.879 9 Si 1.054 2.946 10 H -0.279 1.279 11 H -0.283 1.283 12 H -0.286 1.286 13 C -0.480 4.480 14 H 0.135 0.865 15 C -0.173 4.173 16 C -0.600 4.600 17 S 2.365 3.635 18 O -0.904 6.904 19 O -0.958 6.958 20 H 0.071 0.929 21 H 0.039 0.961 22 H 0.028 0.972 23 H 0.026 0.974 24 H 0.046 0.954 25 H 0.275 0.725 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.131 0.869 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.367 -4.544 -3.420 8.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.140 4.140 3 C 0.035 3.965 4 H 0.078 0.922 5 C -0.665 4.665 6 H 0.074 0.926 7 C -0.172 4.172 8 N -0.512 5.512 9 Si 0.881 3.119 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.212 1.212 13 C -0.593 4.593 14 H 0.153 0.847 15 C -0.213 4.213 16 C -0.726 4.726 17 S 2.550 3.450 18 O -0.901 6.901 19 O -0.955 6.955 20 H 0.090 0.910 21 H 0.058 0.942 22 H 0.047 0.953 23 H 0.045 0.955 24 H 0.065 0.935 25 H 0.089 0.911 26 H 0.113 0.887 27 H 0.116 0.884 28 H 0.149 0.851 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.439 -2.246 -2.314 6.323 hybrid contribution 1.152 -2.325 -1.292 2.899 sum 6.591 -4.570 -3.607 8.794 Atomic orbital electron populations 1.21599 0.96465 0.98864 1.02391 1.21540 0.95668 0.98353 0.98392 1.18656 0.83906 0.94122 0.99770 0.92155 1.21862 1.34194 1.17992 0.92448 0.92558 1.25770 0.92553 0.95294 1.03579 1.70777 1.37102 1.43261 1.00090 0.83774 0.76982 0.76674 0.74453 1.20416 1.20883 1.21189 1.30703 1.11196 1.19862 0.97518 0.84736 1.23494 0.96464 1.02653 0.98736 1.30840 1.07348 1.12529 1.21894 1.11157 0.77187 0.79965 0.76734 1.93653 1.58326 1.57411 1.80718 1.93465 1.66544 1.85443 1.50039 0.91041 0.94186 0.95331 0.95477 0.93522 0.91121 0.88664 0.88371 0.85101 0.84837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.81 37.16 0.36 -2.40 15 2 C -0.10 -2.03 5.38 -26.73 -0.14 -2.18 15 3 C 0.06 1.25 1.64 -91.77 -0.15 1.10 15 4 H 0.06 1.48 5.48 -51.93 -0.28 1.19 15 5 C -0.63 -16.36 6.88 -34.44 -0.24 -16.60 15 6 H 0.06 1.48 7.82 -52.48 -0.41 1.07 15 7 C 0.04 1.04 5.43 -17.82 -0.10 0.94 15 8 N -0.88 -25.46 13.65 55.43 0.76 -24.70 15 9 Si 1.05 25.21 29.91 -169.99 -5.08 20.12 15 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 15 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 12 H -0.29 -6.41 7.11 56.52 0.40 -6.01 15 13 C -0.48 -9.14 3.80 -25.19 -0.10 -9.24 15 14 H 0.13 2.33 8.14 -51.93 -0.42 1.91 15 15 C -0.17 -2.65 6.55 -23.60 -0.15 -2.80 15 16 C -0.60 -8.42 9.09 38.75 0.35 -8.07 15 17 S 2.37 47.12 6.22 -107.50 -0.67 46.46 15 18 O -0.90 -21.63 17.89 -57.45 -1.03 -22.66 15 19 O -0.96 -21.54 18.18 -57.45 -1.04 -22.59 15 20 H 0.07 1.63 7.26 -51.93 -0.38 1.26 15 21 H 0.04 0.81 8.14 -51.93 -0.42 0.38 15 22 H 0.03 0.49 8.14 -51.93 -0.42 0.07 15 23 H 0.03 0.48 8.14 -51.93 -0.42 0.06 15 24 H 0.05 0.93 8.14 -51.93 -0.42 0.50 15 25 H 0.28 7.86 6.29 -40.82 -0.26 7.60 15 26 H 0.09 1.23 8.14 -51.93 -0.42 0.81 15 27 H 0.10 1.51 7.84 -51.93 -0.41 1.10 15 28 H 0.13 1.59 8.14 -51.94 -0.42 1.17 15 29 H 0.13 1.57 8.14 -51.93 -0.42 1.15 15 LS Contribution 255.59 15.07 3.85 3.85 Total: -1.00 -31.75 255.59 -7.29 -39.04 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -3.91 Total: -0.28 kcal Atomic # 6 Polarization: -39.08 SS G_CDS: -0.16 Total: -39.24 kcal Atomic # 7 Polarization: -25.46 SS G_CDS: 0.76 Total: -24.70 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -2.07 Total: -45.25 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.08 Total: 20.12 kcal Atomic # 16 Polarization: 47.12 SS G_CDS: -0.67 Total: 46.46 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.75 -7.29 -39.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260459897.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.698 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds