Wall clock time and date at job start Mon Mar 30 2020 02:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47124 * 2 1 4 4 H 1.08997 * 109.47319 * 307.52692 * 3 2 1 5 5 C 1.50700 * 109.47091 * 187.52420 * 3 2 1 6 6 H 1.07995 * 120.00324 * 245.53162 * 5 3 2 7 7 C 1.37885 * 119.99857 * 65.53406 * 5 3 2 8 8 N 1.31516 * 119.99779 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99711 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47297 * 60.00006 * 9 7 5 11 11 H 1.48502 * 109.46736 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47050 * 299.99684 * 9 7 5 13 13 C 1.53003 * 109.46948 * 67.52442 * 3 2 1 14 14 H 1.09000 * 112.52065 * 65.13837 * 13 3 2 15 15 C 1.53040 * 113.15088 * 295.33900 * 13 3 2 16 16 C 1.53045 * 89.90887 * 211.82606 * 15 13 3 17 17 S 1.81425 * 113.14789 * 194.93347 * 13 3 2 18 18 O 1.42095 * 112.75626 * 251.99047 * 17 13 3 19 19 O 1.42102 * 112.75139 * 35.64761 * 17 13 3 20 20 H 1.09001 * 109.46863 * 169.34980 * 1 2 3 21 21 H 1.08997 * 109.47275 * 289.34970 * 1 2 3 22 22 H 1.09004 * 109.46903 * 49.35061 * 1 2 3 23 23 H 1.09002 * 109.47031 * 239.99948 * 2 1 3 24 24 H 1.09002 * 109.47243 * 120.00159 * 2 1 3 25 25 H 0.97000 * 119.99323 * 179.97438 * 8 7 5 26 26 H 1.09006 * 113.14584 * 327.09579 * 15 13 3 27 27 H 1.08990 * 113.15393 * 96.54868 * 15 13 3 28 28 H 1.08999 * 113.14517 * 148.17789 * 16 15 13 29 29 H 1.08998 * 113.14374 * 277.65239 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5710 1.9937 -0.8150 5 6 3.5355 1.4466 -0.1860 6 1 4.1775 1.7979 0.6081 7 6 4.0841 1.0018 -1.3703 8 7 3.3022 0.5736 -2.3372 9 14 5.9378 1.0075 -1.6011 10 1 6.5679 0.1467 -0.5682 11 1 6.2700 0.4857 -2.9512 12 1 6.4488 2.3954 -1.4680 13 6 1.6901 2.1071 1.3330 14 1 2.2066 1.6488 2.1763 15 6 0.1829 2.2505 1.5564 16 6 0.4253 3.5363 2.3503 17 16 1.8526 3.9137 1.2935 18 8 2.9740 4.3808 2.0306 19 8 1.4792 4.4718 0.0412 20 1 -0.3633 -1.0100 -0.1899 21 1 -0.3634 0.3405 0.9696 22 1 -0.3633 0.6695 -0.7797 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 3.6882 0.2610 -3.1704 26 1 -0.3734 2.4151 0.6336 27 1 -0.2392 1.4472 2.1602 28 1 -0.3844 4.2593 2.2525 29 1 0.6982 3.3531 3.3895 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260459900.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:19 Heat of formation + Delta-G solvation = -59.967371 kcal Electronic energy + Delta-G solvation = -13710.755714 eV Core-core repulsion = 11340.868808 eV Total energy + Delta-G solvation = -2369.886905 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.47072 -36.46443 -35.34578 -33.65025 -31.48801 -28.44722 -25.04591 -23.16737 -21.43752 -19.56356 -18.13507 -16.78525 -16.20302 -15.73120 -15.25494 -14.51811 -13.89302 -13.43435 -13.08957 -12.61164 -12.06200 -11.83358 -11.63143 -11.55083 -11.52925 -11.22459 -10.88589 -10.71105 -10.66672 -10.34740 -10.07589 -9.67269 -9.54650 -9.03158 -8.76301 -8.41061 -6.09761 -4.19566 0.83384 2.79920 3.31179 3.35029 3.39288 4.33908 4.38425 4.59424 4.79137 5.22936 5.36109 5.41337 5.68476 5.76782 6.02475 6.21583 6.25182 6.34915 6.42263 6.55210 6.90587 7.10678 7.29721 7.62497 7.79228 7.92253 8.25333 8.85508 9.48866 10.96806 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.029977 B = 0.013350 C = 0.010306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.838222 B = 2096.823490 C = 2716.321925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.104 4.104 3 C 0.066 3.934 4 H 0.049 0.951 5 C -0.546 4.546 6 H 0.060 0.940 7 C 0.071 3.929 8 N -0.879 5.879 9 Si 0.889 3.111 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.273 1.273 13 C -0.523 4.523 14 H 0.135 0.865 15 C -0.098 4.098 16 C -0.619 4.619 17 S 2.397 3.603 18 O -0.945 6.945 19 O -0.916 6.916 20 H 0.031 0.969 21 H 0.051 0.949 22 H 0.047 0.953 23 H 0.085 0.915 24 H 0.034 0.966 25 H 0.264 0.736 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.112 0.888 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.209 2.207 7.058 9.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.143 4.143 3 C 0.047 3.953 4 H 0.067 0.933 5 C -0.584 4.584 6 H 0.078 0.922 7 C -0.132 4.132 8 N -0.516 5.516 9 Si 0.716 3.284 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.198 1.198 13 C -0.635 4.635 14 H 0.153 0.847 15 C -0.138 4.138 16 C -0.746 4.746 17 S 2.580 3.420 18 O -0.942 6.942 19 O -0.913 6.913 20 H 0.050 0.950 21 H 0.070 0.930 22 H 0.066 0.934 23 H 0.103 0.897 24 H 0.053 0.947 25 H 0.074 0.926 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.130 0.870 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.554 3.089 6.434 9.043 hybrid contribution 0.326 -0.975 0.327 1.079 sum -5.227 2.114 6.761 8.804 Atomic orbital electron populations 1.22265 0.99387 0.99682 1.00735 1.21445 0.91742 0.99358 1.01741 1.18564 0.96302 0.93309 0.87110 0.93283 1.21225 0.91232 1.45190 1.00727 0.92196 1.24933 0.98173 0.94473 0.95643 1.69905 1.34915 1.41596 1.05211 0.86689 0.85466 0.78845 0.77373 1.19990 1.21058 1.19837 1.30760 1.00254 1.22933 1.09512 0.84710 1.22229 0.96232 0.95347 0.99953 1.31060 1.21979 1.07359 1.14152 1.09073 0.76406 0.80409 0.76114 1.93535 1.47853 1.80511 1.72277 1.93643 1.83320 1.76322 1.38008 0.94951 0.93022 0.93383 0.89692 0.94668 0.92605 0.88117 0.88076 0.86979 0.84952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 8.55 37.16 0.32 -2.64 15 2 C -0.10 -2.28 5.28 -26.73 -0.14 -2.43 15 3 C 0.07 1.54 1.46 -91.77 -0.13 1.41 15 4 H 0.05 1.26 7.74 -51.93 -0.40 0.86 15 5 C -0.55 -14.49 8.37 -34.44 -0.29 -14.78 15 6 H 0.06 1.56 7.75 -52.49 -0.41 1.15 15 7 C 0.07 1.95 5.29 -17.82 -0.09 1.85 15 8 N -0.88 -24.62 11.73 55.43 0.65 -23.97 15 9 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 15 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 15 13 C -0.52 -9.64 2.92 -26.71 -0.08 -9.72 15 14 H 0.13 2.31 8.14 -51.93 -0.42 1.89 15 15 C -0.10 -1.45 4.80 -26.69 -0.13 -1.57 15 16 C -0.62 -8.03 7.99 37.18 0.30 -7.73 15 17 S 2.40 43.40 7.06 -107.50 -0.76 42.64 15 18 O -0.94 -19.51 18.18 -57.31 -1.04 -20.55 15 19 O -0.92 -19.50 17.80 -57.31 -1.02 -20.52 15 20 H 0.03 0.54 8.14 -51.93 -0.42 0.11 15 21 H 0.05 0.79 4.60 -51.93 -0.24 0.55 15 22 H 0.05 0.88 7.83 -51.93 -0.41 0.47 15 23 H 0.08 2.14 6.39 -51.93 -0.33 1.80 15 24 H 0.03 0.74 8.13 -51.93 -0.42 0.32 15 25 H 0.26 7.06 8.31 -40.82 -0.34 6.72 15 26 H 0.10 1.49 7.32 -51.93 -0.38 1.11 15 27 H 0.10 1.30 6.66 -51.93 -0.35 0.95 15 28 H 0.11 1.21 8.14 -51.93 -0.42 0.79 15 29 H 0.13 1.47 8.14 -51.93 -0.42 1.04 15 LS Contribution 247.57 15.07 3.73 3.73 Total: -1.00 -31.29 247.57 -7.47 -38.76 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -3.76 Total: -0.64 kcal Atomic # 6 Polarization: -35.35 SS G_CDS: -0.25 Total: -35.60 kcal Atomic # 7 Polarization: -24.62 SS G_CDS: 0.65 Total: -23.97 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -2.06 Total: -41.07 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 43.40 SS G_CDS: -0.76 Total: 42.64 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.29 -7.47 -38.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260459900.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.206 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds