Wall clock time and date at job start Mon Mar 30 2020 02:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.39858 * 125.46006 * 2 1 4 4 C 1.30242 * 110.09225 * 180.02562 * 3 2 1 5 5 C 1.45954 * 107.78936 * 0.26552 * 4 3 2 6 6 C 1.39925 * 133.93361 * 180.47634 * 5 4 3 7 7 C 1.38071 * 119.46755 * 179.59166 * 6 5 4 8 8 O 1.35808 * 119.83074 * 179.69801 * 7 6 5 9 9 C 1.34824 * 116.99870 * 354.43073 * 8 7 6 10 10 H 1.07998 * 120.00302 * 5.04623 * 9 8 7 11 11 C 1.38642 * 119.99552 * 185.05583 * 9 8 7 12 12 N 1.31572 * 120.00238 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99960 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47514 * 59.99209 * 13 11 9 15 15 H 1.48497 * 109.47512 * 179.97438 * 13 11 9 16 16 H 1.48509 * 109.46967 * 299.99455 * 13 11 9 17 17 C 1.39548 * 120.33522 * 359.68225 * 7 6 5 18 18 C 1.36452 * 120.75506 * 0.04494 * 17 7 6 19 19 C 1.37154 * 125.46120 * 180.02562 * 2 1 3 20 20 H 1.08994 * 109.47237 * 89.97158 * 1 2 3 21 21 H 1.08996 * 109.47348 * 209.97623 * 1 2 3 22 22 H 1.09005 * 109.46823 * 329.97746 * 1 2 3 23 23 H 1.08001 * 126.10621 * 179.97438 * 4 3 2 24 24 H 1.07998 * 120.26218 * 359.29601 * 6 5 4 25 25 H 0.96992 * 119.99893 * 180.02562 * 12 11 9 26 26 H 1.08001 * 119.62013 * 180.02562 * 17 7 6 27 27 H 1.08004 * 119.95490 * 179.97438 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2764 1.1392 0.0000 4 6 3.5323 0.7940 -0.0005 5 6 3.5939 -0.6642 -0.0074 6 6 4.6417 -1.5916 -0.0025 7 6 4.3535 -2.9419 -0.0034 8 8 5.3647 -3.8485 -0.0049 9 6 6.6185 -3.3667 -0.1220 10 1 6.7889 -2.3003 -0.1271 11 6 7.6889 -4.2404 -0.2360 12 7 7.4813 -5.5396 -0.2295 13 14 9.4259 -3.5731 -0.3989 14 1 9.7561 -2.7551 0.7957 15 1 10.3829 -4.7037 -0.5040 16 1 9.5199 -2.7297 -1.6177 17 6 3.0285 -3.3798 -0.0025 18 6 1.9980 -2.4854 -0.0016 19 6 2.2607 -1.1171 -0.0005 20 1 -0.3633 0.0005 -1.0276 21 1 -0.3634 -0.8901 0.5134 22 1 -0.3633 0.8898 0.5142 23 1 4.3772 1.4667 -0.0011 24 1 5.6675 -1.2539 -0.0028 25 1 8.2302 -6.1508 -0.3089 26 1 2.8163 -4.4388 -0.0028 27 1 0.9774 -2.8386 -0.0014 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260472118.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:44 Heat of formation + Delta-G solvation = 44.811570 kcal Electronic energy + Delta-G solvation = -13800.099342 eV Core-core repulsion = 11331.604793 eV Total energy + Delta-G solvation = -2468.494550 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.05479 -39.97094 -36.86956 -34.30155 -34.13457 -31.08075 -30.06044 -27.55193 -26.87799 -23.95424 -22.68471 -21.65239 -19.84066 -18.81778 -17.76036 -17.02511 -16.35482 -16.19343 -15.46714 -15.34696 -15.17849 -14.65259 -14.38010 -13.67363 -13.64883 -13.48562 -13.02496 -12.77280 -12.36640 -12.13246 -12.09231 -11.89187 -11.17883 -10.88244 -10.48910 -9.50801 -8.42067 -8.36937 -6.07025 0.01507 0.74530 1.39372 1.49411 1.54758 1.60209 1.61085 2.22581 2.81496 3.17157 3.51608 3.64583 3.74279 3.93966 4.29995 4.44440 4.49398 4.51167 4.70812 4.85039 4.88250 5.06498 5.21396 5.36064 5.59852 5.62852 5.92151 6.06988 6.25143 6.71137 7.04148 7.84883 8.81878 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.052972 B = 0.007205 C = 0.006369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.449700 B = 3885.331916 C = 4395.257989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.416 5.416 3 N -0.270 5.270 4 C 0.056 3.944 5 C -0.151 4.151 6 C -0.186 4.186 7 C 0.081 3.919 8 O -0.230 6.230 9 C -0.410 4.410 10 H 0.101 0.899 11 C -0.022 4.022 12 N -0.921 5.921 13 Si 1.015 2.985 14 H -0.258 1.258 15 H -0.274 1.274 16 H -0.258 1.258 17 C -0.123 4.123 18 C -0.088 4.088 19 C 0.054 3.946 20 H 0.077 0.923 21 H 0.101 0.899 22 H 0.095 0.905 23 H 0.221 0.779 24 H 0.127 0.873 25 H 0.271 0.729 26 H 0.137 0.863 27 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.793 9.616 0.209 13.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.208 5.208 3 N -0.083 5.083 4 C -0.140 4.140 5 C -0.159 4.159 6 C -0.208 4.208 7 C 0.031 3.969 8 O -0.137 6.137 9 C -0.486 4.486 10 H 0.118 0.882 11 C -0.219 4.219 12 N -0.560 5.560 13 Si 0.835 3.165 14 H -0.182 1.182 15 H -0.198 1.198 16 H -0.183 1.183 17 C -0.144 4.144 18 C -0.109 4.109 19 C -0.058 4.058 20 H 0.096 0.904 21 H 0.119 0.881 22 H 0.113 0.887 23 H 0.237 0.763 24 H 0.144 0.856 25 H 0.080 0.920 26 H 0.155 0.845 27 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.724 10.163 0.216 14.776 hybrid contribution 1.448 -0.691 -0.079 1.606 sum -9.276 9.472 0.138 13.258 Atomic orbital electron populations 1.22005 0.72186 1.05411 1.03895 1.48268 1.06655 1.00142 1.65773 1.76345 1.02970 1.10060 1.18945 1.25399 0.95240 0.92637 1.00708 1.19909 0.92823 0.93993 1.09131 1.20489 0.98802 0.91332 1.10163 1.19582 0.89847 0.89294 0.98211 1.83955 1.14336 1.33114 1.82299 1.21746 0.80504 0.94204 1.52163 0.88179 1.26508 1.04114 0.95229 0.96089 1.70174 1.33739 1.03065 1.49010 0.84693 0.74148 0.77857 0.79835 1.18208 1.19821 1.18276 1.20198 0.89073 1.00772 1.04335 1.19701 0.99915 0.87734 1.03568 1.18820 0.90811 0.90170 1.06046 0.90431 0.88072 0.88654 0.76274 0.85582 0.91964 0.84489 0.81909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.96 11.40 127.77 1.46 3.41 15 2 N -0.42 -12.57 4.05 -360.92 -1.46 -14.03 15 3 N -0.27 -8.63 12.40 -53.07 -0.66 -9.29 15 4 C 0.06 1.81 12.28 86.93 1.07 2.88 15 5 C -0.15 -5.84 6.36 -20.24 -0.13 -5.97 15 6 C -0.19 -8.31 9.22 22.64 0.21 -8.10 15 7 C 0.08 3.97 6.64 22.55 0.15 4.12 15 8 O -0.23 -13.57 9.76 -23.32 -0.23 -13.80 15 9 C -0.41 -23.63 9.48 67.92 0.64 -22.99 15 10 H 0.10 5.30 5.19 -2.91 -0.02 5.28 15 11 C -0.02 -1.25 5.49 84.83 0.47 -0.78 15 12 N -0.92 -56.08 13.67 21.61 0.30 -55.79 15 13 Si 1.02 42.63 29.55 68.60 2.03 44.65 15 14 H -0.26 -10.17 7.11 99.48 0.71 -9.46 15 15 H -0.27 -11.09 7.11 99.48 0.71 -10.38 15 16 H -0.26 -10.22 7.11 99.48 0.71 -9.51 15 17 C -0.12 -4.93 9.90 22.17 0.22 -4.71 15 18 C -0.09 -2.88 9.94 22.12 0.22 -2.66 15 19 C 0.05 1.91 6.87 39.20 0.27 2.18 15 20 H 0.08 1.23 8.14 -2.39 -0.02 1.21 15 21 H 0.10 1.45 8.13 -2.39 -0.02 1.43 15 22 H 0.09 1.50 8.14 -2.38 -0.02 1.48 15 23 H 0.22 5.24 8.06 -2.91 -0.02 5.22 15 24 H 0.13 5.65 5.62 -2.91 -0.02 5.63 15 25 H 0.27 15.20 8.31 -92.71 -0.77 14.43 15 26 H 0.14 5.13 8.06 -2.91 -0.02 5.11 15 27 H 0.16 3.79 8.06 -2.91 -0.02 3.77 15 Total: -1.00 -72.41 246.04 5.74 -66.68 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 1.19 Total: 14.20 kcal Atomic # 6 Polarization: -37.19 SS G_CDS: 4.57 Total: -32.62 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -1.82 Total: -79.11 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.23 Total: -13.80 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Total: -72.41 5.74 -66.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260472118.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.487 kcal (2) G-P(sol) polarization free energy of solvation -72.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds