Wall clock time and date at job start Mon Mar 30 2020 02:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36012 * 126.35260 * 2 1 4 4 N 1.30108 * 110.11501 * 179.73185 * 3 2 1 5 5 C 1.35807 * 109.64972 * 0.37521 * 4 3 2 6 6 C 1.39695 * 133.49948 * 179.91277 * 5 4 3 7 7 C 1.38219 * 119.71032 * 179.68888 * 6 5 4 8 8 O 1.35799 * 119.81262 * 180.02562 * 7 6 5 9 9 C 1.34821 * 117.00179 * 354.44285 * 8 7 6 10 10 H 1.08003 * 120.00000 * 5.05669 * 9 8 7 11 11 C 1.38636 * 120.00187 * 185.06041 * 9 8 7 12 12 N 1.31568 * 119.99876 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99965 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47206 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47675 * 119.99970 * 13 11 9 16 16 H 1.48508 * 109.47212 * 239.99649 * 13 11 9 17 17 C 1.39386 * 120.37585 * 359.97438 * 7 6 5 18 18 C 1.37705 * 120.39367 * 0.02562 * 17 7 6 19 19 C 1.38187 * 126.34689 * 179.97438 * 2 1 3 20 20 H 1.08997 * 109.47164 * 270.04426 * 1 2 3 21 21 H 1.09001 * 109.47030 * 30.04654 * 1 2 3 22 22 H 1.08998 * 109.47250 * 150.04430 * 1 2 3 23 23 H 1.07997 * 124.93785 * 359.93814 * 3 2 1 24 24 H 1.08005 * 120.14479 * 359.67218 * 6 5 4 25 25 H 0.97009 * 119.99821 * 180.02562 * 12 11 9 26 26 H 1.07994 * 119.80124 * 180.02562 * 17 7 6 27 27 H 1.07998 * 120.03502 * 180.02562 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0954 0.0000 4 7 3.5204 0.7316 0.0057 5 6 3.6012 -0.6240 0.0014 6 6 4.6700 -1.5236 0.0027 7 6 4.4211 -2.8832 0.0035 8 8 5.4585 -3.7595 0.0053 9 6 6.6977 -3.2413 -0.1102 10 1 6.8367 -2.1702 -0.1164 11 6 7.7936 -4.0831 -0.2210 12 7 7.6243 -5.3878 -0.2130 13 14 9.5107 -3.3650 -0.3803 14 1 9.4307 -1.8823 -0.3628 15 1 10.3488 -3.8294 0.7543 16 1 10.1177 -3.8125 -1.6596 17 6 3.1113 -3.3599 0.0037 18 6 2.0503 -2.4820 0.0024 19 6 2.2840 -1.1130 0.0005 20 1 -0.3633 0.0008 1.0276 21 1 -0.3633 0.8896 -0.5146 22 1 -0.3633 -0.8904 -0.5131 23 1 1.9248 2.1183 -0.0010 24 1 5.6864 -1.1583 0.0027 25 1 8.3912 -5.9769 -0.2901 26 1 2.9274 -4.4241 0.0047 27 1 1.0378 -2.8577 0.0029 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260489242.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:50 Heat of formation + Delta-G solvation = 52.380453 kcal Electronic energy + Delta-G solvation = -13832.086204 eV Core-core repulsion = 11363.919866 eV Total energy + Delta-G solvation = -2468.166338 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.43879 -38.28367 -35.20593 -33.76023 -32.12907 -29.24916 -28.38258 -26.51178 -25.25106 -22.46059 -21.20001 -20.19291 -18.08110 -17.09053 -16.32737 -15.77499 -15.38666 -14.49227 -13.86707 -13.74471 -13.54275 -13.34733 -12.81164 -12.71174 -12.44751 -11.64746 -11.60560 -11.08501 -11.00610 -10.40483 -10.36127 -9.71918 -9.66377 -9.13859 -8.69707 -7.56917 -6.93641 -6.37928 -3.95637 1.61197 2.40415 3.04330 3.18652 3.21420 3.27558 3.37912 4.04436 4.61995 4.76469 4.78161 5.07723 5.14102 5.14734 5.25870 5.35714 5.69340 6.01482 6.15550 6.20187 6.50048 6.71865 7.03320 7.11361 7.26769 7.47953 7.61313 7.70640 8.08181 8.44808 9.08750 9.77573 10.80267 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.054074 B = 0.007227 C = 0.006402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.680312 B = 3873.437807 C = 4372.675860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.501 5.501 3 C 0.242 3.758 4 N -0.508 5.508 5 C 0.094 3.906 6 C -0.204 4.204 7 C 0.142 3.858 8 O -0.178 6.178 9 C -0.387 4.387 10 H 0.094 0.906 11 C 0.038 3.962 12 N -0.865 5.865 13 Si 0.940 3.060 14 H -0.265 1.265 15 H -0.277 1.277 16 H -0.277 1.277 17 C -0.138 4.138 18 C -0.082 4.082 19 C -0.025 4.025 20 H 0.066 0.934 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.203 0.797 24 H 0.134 0.866 25 H 0.268 0.732 26 H 0.128 0.872 27 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.131 8.500 0.075 14.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.195 5.195 3 C -0.043 4.043 4 N -0.229 5.229 5 C -0.022 4.022 6 C -0.226 4.226 7 C 0.087 3.913 8 O -0.082 6.082 9 C -0.463 4.463 10 H 0.111 0.889 11 C -0.165 4.165 12 N -0.501 5.501 13 Si 0.765 3.235 14 H -0.190 1.190 15 H -0.202 1.202 16 H -0.202 1.202 17 C -0.158 4.158 18 C -0.103 4.103 19 C -0.130 4.130 20 H 0.084 0.916 21 H 0.098 0.902 22 H 0.096 0.904 23 H 0.219 0.781 24 H 0.152 0.848 25 H 0.078 0.922 26 H 0.146 0.854 27 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.393 8.525 0.085 14.230 hybrid contribution -0.004 0.013 -0.080 0.081 sum -11.397 8.538 0.005 14.241 Atomic orbital electron populations 1.21783 0.77409 1.03809 1.02601 1.45016 1.06291 1.05732 1.62487 1.25068 0.85668 0.92904 1.00703 1.70376 1.17908 1.11900 1.22753 1.18698 0.91787 0.89283 1.02467 1.20088 0.97991 0.90913 1.13631 1.18939 0.88956 0.88659 0.94744 1.83992 1.13149 1.31894 1.79166 1.21409 0.79990 0.93399 1.51532 0.88858 1.25266 0.99459 0.95164 0.96633 1.70058 1.31348 1.02167 1.46503 0.85656 0.80548 0.79173 0.78166 1.18957 1.20213 1.20214 1.20124 0.89573 0.99371 1.06724 1.19424 0.98098 0.88570 1.04252 1.18633 0.90986 0.89024 1.14396 0.91554 0.90157 0.90355 0.78060 0.84835 0.92190 0.85371 0.86826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.78 11.18 59.85 0.67 1.45 15 2 N -0.50 -7.41 3.21 -123.14 -0.40 -7.81 15 3 C 0.24 3.64 12.50 -89.81 -1.12 2.51 15 4 N -0.51 -10.22 11.27 -12.06 -0.14 -10.36 15 5 C 0.09 2.09 7.22 -84.71 -0.61 1.48 15 6 C -0.20 -4.96 9.21 -39.04 -0.36 -5.32 15 7 C 0.14 3.53 6.64 -39.16 -0.26 3.27 15 8 O -0.18 -5.16 9.75 -0.08 0.00 -5.16 15 9 C -0.39 -11.13 9.48 30.88 0.29 -10.84 15 10 H 0.09 2.56 5.18 -52.48 -0.27 2.28 15 11 C 0.04 1.08 5.49 -17.52 -0.10 0.98 15 12 N -0.87 -25.68 13.67 55.48 0.76 -24.92 15 13 Si 0.94 21.19 29.55 -169.99 -5.02 16.17 15 14 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 15 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 17 C -0.14 -2.89 9.97 -39.35 -0.39 -3.28 15 18 C -0.08 -1.49 10.03 -39.54 -0.40 -1.89 15 19 C -0.03 -0.48 6.87 -83.91 -0.58 -1.06 15 20 H 0.07 0.51 8.14 -51.93 -0.42 0.09 15 21 H 0.08 0.49 8.14 -51.93 -0.42 0.07 15 22 H 0.08 0.66 8.14 -51.93 -0.42 0.23 15 23 H 0.20 1.92 8.06 -52.49 -0.42 1.50 15 24 H 0.13 3.35 5.61 -52.48 -0.29 3.06 15 25 H 0.27 7.29 8.31 -40.82 -0.34 6.95 15 26 H 0.13 2.46 8.06 -52.49 -0.42 2.04 15 27 H 0.11 1.61 8.06 -52.49 -0.42 1.19 15 LS Contribution 245.08 15.07 3.69 3.69 Total: -1.00 -34.25 245.08 -6.19 -40.45 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -2.24 Total: 0.62 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -2.85 Total: -12.69 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: 0.23 Total: -43.08 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: 0.00 Total: -5.16 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -34.25 -6.19 -40.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260489242.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.829 kcal (2) G-P(sol) polarization free energy of solvation -34.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds