Wall clock time and date at job start Mon Mar 30 2020 02:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36012 * 126.35260 * 2 1 4 4 N 1.30108 * 110.11501 * 179.73185 * 3 2 1 5 5 C 1.35807 * 109.64972 * 0.37521 * 4 3 2 6 6 C 1.39695 * 133.49948 * 179.91277 * 5 4 3 7 7 C 1.38219 * 119.71032 * 179.68888 * 6 5 4 8 8 O 1.35799 * 119.81262 * 180.02562 * 7 6 5 9 9 C 1.34821 * 117.00179 * 354.44285 * 8 7 6 10 10 H 1.08003 * 120.00000 * 5.05669 * 9 8 7 11 11 C 1.38636 * 120.00187 * 185.06041 * 9 8 7 12 12 N 1.31568 * 119.99876 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99965 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47206 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47675 * 119.99970 * 13 11 9 16 16 H 1.48508 * 109.47212 * 239.99649 * 13 11 9 17 17 C 1.39386 * 120.37585 * 359.97438 * 7 6 5 18 18 C 1.37705 * 120.39367 * 0.02562 * 17 7 6 19 19 C 1.38187 * 126.34689 * 179.97438 * 2 1 3 20 20 H 1.08997 * 109.47164 * 270.04426 * 1 2 3 21 21 H 1.09001 * 109.47030 * 30.04654 * 1 2 3 22 22 H 1.08998 * 109.47250 * 150.04430 * 1 2 3 23 23 H 1.07997 * 124.93785 * 359.93814 * 3 2 1 24 24 H 1.08005 * 120.14479 * 359.67218 * 6 5 4 25 25 H 0.97009 * 119.99821 * 180.02562 * 12 11 9 26 26 H 1.07994 * 119.80124 * 180.02562 * 17 7 6 27 27 H 1.07998 * 120.03502 * 180.02562 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0954 0.0000 4 7 3.5204 0.7316 0.0057 5 6 3.6012 -0.6240 0.0014 6 6 4.6700 -1.5236 0.0027 7 6 4.4211 -2.8832 0.0035 8 8 5.4585 -3.7595 0.0053 9 6 6.6977 -3.2413 -0.1102 10 1 6.8367 -2.1702 -0.1164 11 6 7.7936 -4.0831 -0.2210 12 7 7.6243 -5.3878 -0.2130 13 14 9.5107 -3.3650 -0.3803 14 1 9.4307 -1.8823 -0.3628 15 1 10.3488 -3.8294 0.7543 16 1 10.1177 -3.8125 -1.6596 17 6 3.1113 -3.3599 0.0037 18 6 2.0503 -2.4820 0.0024 19 6 2.2840 -1.1130 0.0005 20 1 -0.3633 0.0008 1.0276 21 1 -0.3633 0.8896 -0.5146 22 1 -0.3633 -0.8904 -0.5131 23 1 1.9248 2.1183 -0.0010 24 1 5.6864 -1.1583 0.0027 25 1 8.3912 -5.9769 -0.2901 26 1 2.9274 -4.4241 0.0047 27 1 1.0378 -2.8577 0.0029 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260489242.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:49 Heat of formation + Delta-G solvation = 29.162308 kcal Electronic energy + Delta-G solvation = -13833.093019 eV Core-core repulsion = 11363.919866 eV Total energy + Delta-G solvation = -2469.173152 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.86494 -40.14292 -36.88942 -35.02053 -34.19728 -30.84283 -29.94646 -27.70739 -27.14200 -24.03697 -22.82822 -21.61601 -19.95319 -18.76237 -17.79686 -17.41951 -16.60039 -16.26779 -15.56176 -15.39978 -15.20980 -14.93630 -14.17099 -13.82559 -13.64692 -13.50204 -13.16142 -12.83808 -12.67388 -12.12055 -12.00150 -11.51871 -11.12389 -10.75862 -10.66137 -9.13303 -8.64756 -8.46561 -6.13491 0.09027 0.73987 1.34948 1.42619 1.53207 1.89355 1.98551 2.18954 2.82520 3.15752 3.39610 3.57563 3.80841 4.03748 4.19380 4.47394 4.55787 4.56970 4.73031 4.80046 4.86055 5.14563 5.17804 5.46685 5.58323 5.66622 6.00464 6.03703 6.43414 6.98627 7.04639 7.77249 8.76323 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.054074 B = 0.007227 C = 0.006402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.680312 B = 3873.437807 C = 4372.675860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.491 5.491 3 C 0.271 3.729 4 N -0.561 5.561 5 C 0.066 3.934 6 C -0.225 4.225 7 C 0.112 3.888 8 O -0.225 6.225 9 C -0.412 4.412 10 H 0.092 0.908 11 C -0.018 4.018 12 N -0.916 5.916 13 Si 1.015 2.985 14 H -0.260 1.260 15 H -0.264 1.264 16 H -0.264 1.264 17 C -0.158 4.158 18 C -0.053 4.053 19 C -0.023 4.023 20 H 0.085 0.915 21 H 0.118 0.882 22 H 0.088 0.912 23 H 0.263 0.737 24 H 0.107 0.893 25 H 0.274 0.726 26 H 0.140 0.860 27 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.099 10.807 -0.033 18.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.183 5.183 3 C -0.014 4.014 4 N -0.284 5.284 5 C -0.052 4.052 6 C -0.248 4.248 7 C 0.060 3.940 8 O -0.131 6.131 9 C -0.489 4.489 10 H 0.109 0.891 11 C -0.216 4.216 12 N -0.555 5.555 13 Si 0.835 3.165 14 H -0.184 1.184 15 H -0.189 1.189 16 H -0.189 1.189 17 C -0.177 4.177 18 C -0.073 4.073 19 C -0.131 4.131 20 H 0.104 0.896 21 H 0.137 0.863 22 H 0.107 0.893 23 H 0.279 0.721 24 H 0.125 0.875 25 H 0.083 0.917 26 H 0.158 0.842 27 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -14.457 10.872 -0.019 18.089 hybrid contribution 0.514 -0.422 -0.033 0.665 sum -13.944 10.450 -0.052 17.425 Atomic orbital electron populations 1.22310 0.73137 1.06370 1.04701 1.45417 1.08591 1.03907 1.60395 1.26232 0.84182 0.95067 0.95909 1.70341 1.21297 1.10855 1.25867 1.18838 0.92627 0.90526 1.03190 1.20017 0.97847 0.91588 1.15312 1.19484 0.89736 0.88802 0.95947 1.83943 1.13851 1.33481 1.81824 1.21758 0.80906 0.93692 1.52519 0.89102 1.26486 1.03720 0.95521 0.95862 1.70175 1.32914 1.03684 1.48679 0.84580 0.74625 0.78464 0.78839 1.18399 1.18884 1.18909 1.20372 0.88621 1.00728 1.08027 1.19855 0.99443 0.87784 1.00265 1.18831 0.90755 0.90526 1.12958 0.89601 0.86336 0.89298 0.72141 0.87544 0.91732 0.84233 0.81639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.84 11.18 127.77 1.43 2.27 15 2 N -0.49 -12.09 3.21 -543.51 -1.74 -13.83 15 3 C 0.27 6.94 12.50 180.06 2.25 9.19 15 4 N -0.56 -21.83 11.27 -192.07 -2.17 -23.99 15 5 C 0.07 2.92 7.22 39.43 0.28 3.20 15 6 C -0.23 -11.64 9.21 22.62 0.21 -11.43 15 7 C 0.11 5.93 6.64 22.54 0.15 6.08 15 8 O -0.22 -14.00 9.75 -23.19 -0.23 -14.23 15 9 C -0.41 -25.48 9.48 67.92 0.64 -24.83 15 10 H 0.09 5.42 5.18 -2.91 -0.02 5.41 15 11 C -0.02 -1.07 5.49 84.83 0.47 -0.61 15 12 N -0.92 -57.20 13.67 21.61 0.30 -56.91 15 13 Si 1.02 45.25 29.55 68.60 2.03 47.27 15 14 H -0.26 -11.16 7.11 99.48 0.71 -10.46 15 15 H -0.26 -11.12 7.11 99.48 0.71 -10.41 15 16 H -0.26 -11.14 7.11 99.48 0.71 -10.43 15 17 C -0.16 -6.65 9.97 22.42 0.22 -6.43 15 18 C -0.05 -1.78 10.03 22.30 0.22 -1.56 15 19 C -0.02 -0.83 6.87 38.85 0.27 -0.56 15 20 H 0.09 0.74 8.14 -2.39 -0.02 0.72 15 21 H 0.12 0.53 8.14 -2.39 -0.02 0.51 15 22 H 0.09 0.90 8.14 -2.39 -0.02 0.88 15 23 H 0.26 3.18 8.06 -2.91 -0.02 3.15 15 24 H 0.11 5.88 5.61 -2.91 -0.02 5.86 15 25 H 0.27 15.53 8.31 -92.70 -0.77 14.76 15 26 H 0.14 5.43 8.06 -2.91 -0.02 5.41 15 27 H 0.17 3.79 8.06 -2.91 -0.02 3.77 15 Total: -1.00 -82.71 245.08 5.52 -77.19 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 1.19 Total: 9.18 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: 6.15 Total: -24.69 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -3.61 Total: -94.73 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.23 Total: -14.23 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -82.71 5.52 -77.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260489242.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.353 kcal (2) G-P(sol) polarization free energy of solvation -82.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds