Wall clock time and date at job start Mon Mar 30 2020 02:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36096 * 126.35085 * 2 1 4 4 N 1.30119 * 110.05448 * 179.97438 * 3 2 1 5 5 C 1.35699 * 109.64663 * 359.46554 * 4 3 2 6 6 C 1.38076 * 126.35607 * 179.20864 * 2 1 3 7 7 C 1.38878 * 134.01162 * 0.02562 * 6 2 1 8 8 C 1.37948 * 119.96997 * 179.97438 * 7 6 2 9 9 C 1.38584 * 120.53725 * 0.02562 * 8 7 6 10 10 C 1.38360 * 120.43783 * 359.97438 * 9 8 7 11 11 O 1.35688 * 120.18011 * 180.02562 * 10 9 8 12 12 C 1.34794 * 117.00343 * 5.59945 * 11 10 9 13 13 H 1.07998 * 120.00305 * 354.93946 * 12 11 10 14 14 C 1.38634 * 119.99885 * 174.94406 * 12 11 10 15 15 N 1.31573 * 119.99921 * 179.72615 * 14 12 11 16 16 Si 1.86799 * 120.00186 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47062 * 90.00326 * 16 14 12 18 18 H 1.48498 * 109.47370 * 210.00510 * 16 14 12 19 19 H 1.48501 * 109.46976 * 330.00334 * 16 14 12 20 20 H 1.08998 * 109.47287 * 270.78903 * 1 2 3 21 21 H 1.09010 * 109.47543 * 30.79219 * 1 2 3 22 22 H 1.08996 * 109.47106 * 150.78854 * 1 2 3 23 23 H 1.08001 * 124.96846 * 359.42789 * 3 2 1 24 24 H 1.08001 * 120.01254 * 0.02562 * 7 6 2 25 25 H 1.07998 * 119.72982 * 179.97438 * 8 7 6 26 26 H 1.08005 * 119.78500 * 179.97438 * 9 8 7 27 27 H 0.97000 * 119.99843 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2716 1.0961 0.0000 4 7 3.5205 0.7310 0.0005 5 6 3.5999 -0.6236 0.0129 6 6 2.2835 -1.1119 0.0154 7 6 2.0511 -2.4810 0.0338 8 6 3.1140 -3.3602 0.0456 9 6 4.4174 -2.8895 0.0397 10 6 4.6714 -1.5295 0.0213 11 8 5.9496 -1.0743 0.0151 12 6 6.9271 -1.9965 -0.0898 13 1 6.6808 -3.0479 -0.0817 14 6 8.2488 -1.5951 -0.2079 15 7 9.2035 -2.4953 -0.3048 16 14 8.6750 0.2236 -0.2224 17 1 8.9185 0.6860 1.1676 18 1 9.8977 0.4390 -1.0371 19 1 7.5476 0.9915 -0.8093 20 1 -0.3634 0.0142 1.0275 21 1 -0.3634 0.8829 -0.5261 22 1 -0.3633 -0.8969 -0.5015 23 1 1.9257 2.1192 -0.0088 24 1 1.0387 -2.8571 0.0381 25 1 2.9288 -4.4241 0.0604 26 1 5.2404 -3.5887 0.0494 27 1 10.1283 -2.2144 -0.3878 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260589030.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:53 Heat of formation + Delta-G solvation = 53.645392 kcal Electronic energy + Delta-G solvation = -14017.182151 eV Core-core repulsion = 11549.070665 eV Total energy + Delta-G solvation = -2468.111486 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.47163 -38.39965 -35.55428 -33.69853 -32.37595 -29.02264 -28.57838 -26.62255 -25.18711 -22.29197 -21.63946 -19.97470 -18.12664 -17.16418 -16.16323 -15.80815 -15.42273 -14.78405 -14.25659 -13.80953 -13.48366 -13.15773 -12.82292 -12.62175 -12.29723 -12.28531 -11.30199 -11.10654 -10.97678 -10.60854 -10.17570 -9.58994 -9.47671 -9.40340 -8.76347 -7.79058 -6.90034 -6.44131 -4.06598 1.76390 2.27060 3.02388 3.28479 3.31817 3.39455 3.52655 4.28989 4.55340 4.69069 4.83912 4.89476 5.10716 5.16129 5.18699 5.36856 5.76743 5.79859 6.10210 6.25276 6.28726 6.77967 6.99573 7.05692 7.32048 7.59665 7.63624 7.75994 7.99989 8.48289 8.90993 9.56104 10.62030 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.042168 B = 0.009029 C = 0.007472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.844611 B = 3100.242131 C = 3746.421495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.505 5.505 3 C 0.207 3.793 4 N -0.466 5.466 5 C -0.013 4.013 6 C 0.099 3.901 7 C -0.222 4.222 8 C -0.034 4.034 9 C -0.264 4.264 10 C 0.214 3.786 11 O -0.192 6.192 12 C -0.387 4.387 13 H 0.111 0.889 14 C 0.067 3.933 15 N -0.872 5.872 16 Si 0.903 3.097 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.252 1.252 20 H 0.066 0.934 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.204 0.796 24 H 0.106 0.894 25 H 0.118 0.882 26 H 0.139 0.861 27 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.342 3.398 0.357 15.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.199 5.199 3 C -0.077 4.077 4 N -0.184 5.184 5 C -0.131 4.131 6 C -0.010 4.010 7 C -0.245 4.245 8 C -0.053 4.053 9 C -0.286 4.286 10 C 0.158 3.842 11 O -0.094 6.094 12 C -0.462 4.462 13 H 0.128 0.872 14 C -0.138 4.138 15 N -0.509 5.509 16 Si 0.728 3.272 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.176 1.176 20 H 0.085 0.915 21 H 0.099 0.901 22 H 0.097 0.903 23 H 0.220 0.780 24 H 0.124 0.876 25 H 0.136 0.864 26 H 0.156 0.844 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.360 4.137 0.333 14.948 hybrid contribution -0.492 0.117 0.010 0.505 sum -14.852 4.255 0.342 15.453 Atomic orbital electron populations 1.21782 0.77156 1.03868 1.02636 1.45137 1.06495 1.05675 1.62574 1.24995 0.85283 0.92866 1.04595 1.70262 1.17988 1.11604 1.18500 1.17981 0.90786 0.89502 1.14841 1.18454 0.89762 0.89050 1.03703 1.19322 0.98501 0.88493 1.18155 1.20516 0.91539 0.98123 0.95165 1.20843 0.97521 0.94266 1.15925 1.18189 0.83117 0.90327 0.92570 1.83609 1.11281 1.36888 1.77608 1.20896 0.84772 0.89570 1.50985 0.87196 1.24495 0.94003 1.00145 0.95141 1.69656 1.00724 1.34080 1.46402 0.86192 0.78508 0.83550 0.78999 1.19724 1.20783 1.17606 0.91527 0.90056 0.90292 0.77994 0.87602 0.86413 0.84354 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.82 11.18 59.84 0.67 1.49 15 2 N -0.51 -7.79 3.21 -123.18 -0.40 -8.19 15 3 C 0.21 3.38 12.51 -89.72 -1.12 2.26 15 4 N -0.47 -10.32 11.27 -11.93 -0.13 -10.45 15 5 C -0.01 -0.31 7.18 -84.56 -0.61 -0.91 15 6 C 0.10 1.92 6.87 -84.00 -0.58 1.35 15 7 C -0.22 -3.91 10.04 -39.45 -0.40 -4.31 15 8 C -0.03 -0.62 10.02 -39.56 -0.40 -1.02 15 9 C -0.26 -5.90 9.15 -39.41 -0.36 -6.26 15 10 C 0.21 5.40 6.68 -38.76 -0.26 5.15 15 11 O -0.19 -5.43 8.59 0.34 0.00 -5.43 15 12 C -0.39 -11.20 9.94 30.88 0.31 -10.89 15 13 H 0.11 3.18 5.44 -52.49 -0.29 2.90 15 14 C 0.07 1.91 5.49 -17.52 -0.10 1.82 15 15 N -0.87 -25.36 13.96 55.48 0.77 -24.58 15 16 Si 0.90 22.60 28.62 -169.99 -4.86 17.73 15 17 H -0.27 -6.69 7.11 56.52 0.40 -6.29 15 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 19 H -0.25 -6.57 7.11 56.52 0.40 -6.17 15 20 H 0.07 0.53 8.14 -51.93 -0.42 0.11 15 21 H 0.08 0.53 8.14 -51.92 -0.42 0.11 15 22 H 0.08 0.68 8.14 -51.93 -0.42 0.25 15 23 H 0.20 2.21 8.06 -52.49 -0.42 1.79 15 24 H 0.11 1.51 8.06 -52.49 -0.42 1.09 15 25 H 0.12 1.76 8.06 -52.49 -0.42 1.33 15 26 H 0.14 3.16 5.62 -52.48 -0.29 2.86 15 27 H 0.28 7.53 8.31 -40.82 -0.34 7.19 15 LS Contribution 244.00 15.07 3.68 3.68 Total: -1.00 -33.67 244.00 -6.03 -39.70 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -2.25 Total: -1.13 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: -2.84 Total: -11.33 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.25 Total: -43.22 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: 0.00 Total: -5.43 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.86 Total: 17.73 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -33.67 -6.03 -39.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260589030.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.340 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds