Wall clock time and date at job start Mon Mar 30 2020 02:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36096 * 126.35085 * 2 1 4 4 N 1.30119 * 110.05448 * 179.97438 * 3 2 1 5 5 C 1.35699 * 109.64663 * 359.46554 * 4 3 2 6 6 C 1.38076 * 126.35607 * 179.20864 * 2 1 3 7 7 C 1.38878 * 134.01162 * 0.02562 * 6 2 1 8 8 C 1.37948 * 119.96997 * 179.97438 * 7 6 2 9 9 C 1.38584 * 120.53725 * 0.02562 * 8 7 6 10 10 C 1.38360 * 120.43783 * 359.97438 * 9 8 7 11 11 O 1.35688 * 120.18011 * 180.02562 * 10 9 8 12 12 C 1.34794 * 117.00343 * 5.59945 * 11 10 9 13 13 H 1.07998 * 120.00305 * 354.93946 * 12 11 10 14 14 C 1.38634 * 119.99885 * 174.94406 * 12 11 10 15 15 N 1.31573 * 119.99921 * 179.72615 * 14 12 11 16 16 Si 1.86799 * 120.00186 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47062 * 90.00326 * 16 14 12 18 18 H 1.48498 * 109.47370 * 210.00510 * 16 14 12 19 19 H 1.48501 * 109.46976 * 330.00334 * 16 14 12 20 20 H 1.08998 * 109.47287 * 270.78903 * 1 2 3 21 21 H 1.09010 * 109.47543 * 30.79219 * 1 2 3 22 22 H 1.08996 * 109.47106 * 150.78854 * 1 2 3 23 23 H 1.08001 * 124.96846 * 359.42789 * 3 2 1 24 24 H 1.08001 * 120.01254 * 0.02562 * 7 6 2 25 25 H 1.07998 * 119.72982 * 179.97438 * 8 7 6 26 26 H 1.08005 * 119.78500 * 179.97438 * 9 8 7 27 27 H 0.97000 * 119.99843 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2716 1.0961 0.0000 4 7 3.5205 0.7310 0.0005 5 6 3.5999 -0.6236 0.0129 6 6 2.2835 -1.1119 0.0154 7 6 2.0511 -2.4810 0.0338 8 6 3.1140 -3.3602 0.0456 9 6 4.4174 -2.8895 0.0397 10 6 4.6714 -1.5295 0.0213 11 8 5.9496 -1.0743 0.0151 12 6 6.9271 -1.9965 -0.0898 13 1 6.6808 -3.0479 -0.0817 14 6 8.2488 -1.5951 -0.2079 15 7 9.2035 -2.4953 -0.3048 16 14 8.6750 0.2236 -0.2224 17 1 8.9185 0.6860 1.1676 18 1 9.8977 0.4390 -1.0371 19 1 7.5476 0.9915 -0.8093 20 1 -0.3634 0.0142 1.0275 21 1 -0.3634 0.8829 -0.5261 22 1 -0.3633 -0.8969 -0.5015 23 1 1.9257 2.1192 -0.0088 24 1 1.0387 -2.8571 0.0381 25 1 2.9288 -4.4241 0.0604 26 1 5.2404 -3.5887 0.0494 27 1 10.1283 -2.2144 -0.3878 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260589030.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:52 Heat of formation + Delta-G solvation = 30.786471 kcal Electronic energy + Delta-G solvation = -14018.173388 eV Core-core repulsion = 11549.070665 eV Total energy + Delta-G solvation = -2469.102723 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.92378 -40.19992 -37.17961 -35.01629 -34.41087 -30.55282 -30.19712 -27.74807 -27.09842 -23.80112 -23.24344 -21.50205 -20.00784 -18.73848 -17.72382 -17.43454 -16.72040 -16.38454 -15.96207 -15.52352 -15.24048 -14.60302 -14.35094 -14.05938 -13.77123 -13.47122 -13.01832 -12.86548 -12.63714 -12.21347 -12.09214 -11.47301 -11.14473 -10.89552 -10.68158 -9.31256 -8.56515 -8.53672 -6.22711 0.24966 0.63236 1.27213 1.31909 1.51621 1.84657 1.99454 2.27577 2.74406 2.99523 3.15438 3.49730 3.90884 4.06230 4.28788 4.37553 4.54282 4.56726 4.68810 4.79540 4.80313 5.28783 5.33048 5.52047 5.68012 5.71914 5.86408 6.15481 6.40797 6.80981 7.03536 7.60255 8.57055 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.042168 B = 0.009029 C = 0.007472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.844611 B = 3100.242131 C = 3746.421495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.495 5.495 3 C 0.245 3.755 4 N -0.539 5.539 5 C -0.043 4.043 6 C 0.087 3.913 7 C -0.181 4.181 8 C -0.044 4.044 9 C -0.268 4.268 10 C 0.164 3.836 11 O -0.234 6.234 12 C -0.400 4.400 13 H 0.090 0.910 14 C 0.018 3.982 15 N -0.915 5.915 16 Si 0.963 3.037 17 H -0.266 1.266 18 H -0.260 1.260 19 H -0.274 1.274 20 H 0.086 0.914 21 H 0.116 0.884 22 H 0.092 0.908 23 H 0.259 0.741 24 H 0.157 0.843 25 H 0.159 0.841 26 H 0.119 0.881 27 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.785 4.505 0.399 20.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.187 5.187 3 C -0.041 4.041 4 N -0.258 5.258 5 C -0.160 4.160 6 C -0.024 4.024 7 C -0.203 4.203 8 C -0.063 4.063 9 C -0.289 4.289 10 C 0.112 3.888 11 O -0.140 6.140 12 C -0.476 4.476 13 H 0.107 0.893 14 C -0.181 4.181 15 N -0.555 5.555 16 Si 0.786 3.214 17 H -0.191 1.191 18 H -0.184 1.184 19 H -0.199 1.199 20 H 0.105 0.895 21 H 0.135 0.865 22 H 0.111 0.889 23 H 0.275 0.725 24 H 0.175 0.825 25 H 0.177 0.823 26 H 0.137 0.863 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.897 5.227 0.379 19.610 hybrid contribution 0.291 -0.193 0.011 0.349 sum -18.606 5.034 0.389 19.279 Atomic orbital electron populations 1.22316 0.72797 1.06413 1.04791 1.45547 1.08778 1.03871 1.60458 1.26100 0.83915 0.95073 0.99000 1.70227 1.21573 1.11401 1.22641 1.18359 0.91923 0.90570 1.15197 1.18752 0.89034 0.90797 1.03857 1.19931 1.00464 0.87502 1.12362 1.20933 0.89803 1.00598 0.94969 1.20988 0.99229 0.93176 1.15555 1.18868 0.82863 0.92220 0.94858 1.83567 1.12268 1.36638 1.81540 1.20842 0.85808 0.89209 1.51715 0.89264 1.25163 0.93851 1.03767 0.95356 1.69714 1.01133 1.35453 1.49174 0.85321 0.77947 0.78854 0.79243 1.19101 1.18425 1.19933 0.89503 0.86530 0.88940 0.72503 0.82501 0.82316 0.86321 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 11.18 127.77 1.43 2.33 15 2 N -0.50 -12.82 3.21 -543.62 -1.74 -14.56 15 3 C 0.24 7.04 12.51 180.03 2.25 9.29 15 4 N -0.54 -23.55 11.27 -191.67 -2.16 -25.71 15 5 C -0.04 -2.03 7.18 39.58 0.28 -1.75 15 6 C 0.09 3.08 6.87 38.84 0.27 3.35 15 7 C -0.18 -5.57 10.04 22.35 0.22 -5.34 15 8 C -0.04 -1.51 10.02 22.28 0.22 -1.29 15 9 C -0.27 -12.42 9.15 22.38 0.20 -12.22 15 10 C 0.16 8.69 6.68 22.80 0.15 8.84 15 11 O -0.23 -14.23 8.59 -21.68 -0.19 -14.42 15 12 C -0.40 -24.97 9.94 67.91 0.68 -24.29 15 13 H 0.09 5.68 5.44 -2.91 -0.02 5.67 15 14 C 0.02 1.09 5.49 84.83 0.47 1.56 15 15 N -0.91 -56.11 13.96 21.61 0.30 -55.81 15 16 Si 0.96 49.21 28.62 68.60 1.96 51.17 15 17 H -0.27 -13.10 7.11 99.48 0.71 -12.39 15 18 H -0.26 -12.09 7.11 99.48 0.71 -11.38 15 19 H -0.27 -14.79 7.11 99.48 0.71 -14.08 15 20 H 0.09 0.78 8.14 -2.39 -0.02 0.76 15 21 H 0.12 0.65 8.14 -2.38 -0.02 0.63 15 22 H 0.09 0.92 8.14 -2.39 -0.02 0.90 15 23 H 0.26 4.09 8.06 -2.91 -0.02 4.06 15 24 H 0.16 3.30 8.06 -2.91 -0.02 3.28 15 25 H 0.16 4.14 8.06 -2.91 -0.02 4.12 15 26 H 0.12 5.87 5.62 -2.91 -0.02 5.85 15 27 H 0.29 16.06 8.31 -92.71 -0.77 15.29 15 Total: -1.00 -81.69 244.00 5.54 -76.15 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: 1.19 Total: 2.71 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 6.18 Total: -19.53 kcal Atomic # 7 Polarization: -92.48 SS G_CDS: -3.60 Total: -96.08 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.19 Total: -14.42 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 1.96 Total: 51.17 kcal Total: -81.69 5.54 -76.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260589030.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.936 kcal (2) G-P(sol) polarization free energy of solvation -81.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds