Wall clock time and date at job start Mon Mar 30 2020 02:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37764 * 120.13650 * 2 1 4 4 C 1.38645 * 120.40447 * 179.84411 * 3 2 1 5 5 C 1.38065 * 120.47905 * 0.39884 * 4 3 2 6 6 C 1.38504 * 119.90170 * 359.82468 * 5 4 3 7 7 O 1.35256 * 133.78910 * 179.97438 * 6 5 4 8 8 C 1.34527 * 108.15751 * 180.02562 * 7 6 5 9 9 N 1.37612 * 124.96305 * 179.97438 * 8 7 6 10 10 C 1.36958 * 120.00198 * 0.02736 * 9 8 7 11 11 H 1.08008 * 120.00041 * 359.97438 * 10 9 8 12 12 C 1.38808 * 120.00227 * 179.97438 * 10 9 8 13 13 N 1.31546 * 119.99891 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00242 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46860 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46921 * 119.99759 * 14 12 10 17 17 H 1.48498 * 109.47081 * 239.99746 * 14 12 10 18 18 N 1.30922 * 110.07257 * 359.97438 * 8 7 6 19 19 C 1.35947 * 108.72367 * 359.97438 * 18 8 7 20 20 H 1.09002 * 109.47152 * 269.72012 * 1 2 3 21 21 H 1.09001 * 109.46980 * 149.72112 * 1 2 3 22 22 H 1.09004 * 109.47113 * 29.72093 * 1 2 3 23 23 H 1.08000 * 119.79670 * 0.02621 * 3 2 1 24 24 H 1.07999 * 119.75661 * 180.22269 * 4 3 2 25 25 H 1.08004 * 120.04588 * 179.79756 * 5 4 3 26 26 H 0.97000 * 119.99813 * 180.02562 * 9 8 7 27 27 H 0.96999 * 120.00221 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1987 1.1914 0.0000 4 6 3.5851 1.1979 0.0033 5 6 4.2910 0.0113 -0.0017 6 6 3.6121 -1.1959 -0.0064 7 8 4.0044 -2.4903 -0.0122 8 6 2.9027 -3.2622 -0.0153 9 7 2.9040 -4.6384 -0.0218 10 6 4.0907 -5.3220 -0.0251 11 1 5.0256 -4.7811 -0.0230 12 6 4.0920 -6.7101 -0.0311 13 7 2.9535 -7.3689 -0.0332 14 14 5.7107 -7.6426 -0.0364 15 1 6.8385 -6.6765 -0.0324 16 1 5.7910 -8.5015 1.1723 17 1 5.7892 -8.4910 -1.2526 18 7 1.8290 -2.5130 -0.0111 19 6 2.2080 -1.2074 -0.0046 20 1 -0.3633 -0.0050 1.0277 21 1 -0.3633 -0.8875 -0.5182 22 1 -0.3633 0.8925 -0.5095 23 1 1.6576 2.1261 0.0004 24 1 4.1167 2.1380 0.0069 25 1 5.3710 0.0246 -0.0025 26 1 2.0644 -5.1241 -0.0240 27 1 2.9543 -8.3389 -0.0371 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260616368.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:02 Heat of formation + Delta-G solvation = 13.545221 kcal Electronic energy + Delta-G solvation = -13824.615633 eV Core-core repulsion = 11354.765273 eV Total energy + Delta-G solvation = -2469.850360 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.71779 -39.04936 -37.40983 -35.27600 -33.70042 -33.06284 -29.90932 -27.67830 -26.67893 -24.02265 -23.05633 -21.65060 -20.21253 -18.82266 -18.13321 -17.57149 -17.24572 -16.50247 -15.79532 -15.43910 -14.56463 -14.41847 -14.38122 -13.58280 -13.56767 -13.16299 -12.74373 -12.73803 -12.55969 -12.47643 -12.14562 -12.08870 -11.65113 -10.99171 -10.57006 -9.39741 -8.69361 -8.65542 -6.05482 0.12011 0.49292 1.35984 1.38121 1.47797 1.59564 1.83159 2.20680 2.87461 2.91155 3.00114 3.78851 4.03909 4.30396 4.35920 4.57547 4.58884 4.83403 4.89098 4.92736 5.12884 5.19130 5.39852 5.41949 5.58067 5.74878 5.78337 6.02819 6.46583 6.80671 7.05231 7.51241 8.52255 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.054371 B = 0.007081 C = 0.006286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.859733 B = 3953.359435 C = 4453.074560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.098 4.098 3 C -0.099 4.099 4 C -0.125 4.125 5 C -0.091 4.091 6 C -0.070 4.070 7 O -0.258 6.258 8 C 0.457 3.543 9 N -0.506 5.506 10 C -0.346 4.346 11 H 0.099 0.901 12 C -0.008 4.008 13 N -0.914 5.914 14 Si 1.011 2.989 15 H -0.262 1.262 16 H -0.269 1.269 17 H -0.269 1.269 18 N -0.618 5.618 19 C 0.057 3.943 20 H 0.069 0.931 21 H 0.044 0.956 22 H 0.094 0.906 23 H 0.169 0.831 24 H 0.175 0.825 25 H 0.141 0.859 26 H 0.424 0.576 27 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.204 12.785 0.046 12.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.101 4.101 3 C -0.117 4.117 4 C -0.145 4.145 5 C -0.110 4.110 6 C -0.121 4.121 7 O -0.152 6.152 8 C 0.157 3.843 9 N -0.135 5.135 10 C -0.475 4.475 11 H 0.117 0.883 12 C -0.210 4.210 13 N -0.552 5.552 14 Si 0.833 3.167 15 H -0.186 1.186 16 H -0.194 1.194 17 H -0.194 1.194 18 N -0.367 5.367 19 C -0.058 4.058 20 H 0.088 0.912 21 H 0.063 0.937 22 H 0.113 0.887 23 H 0.187 0.813 24 H 0.192 0.808 25 H 0.159 0.841 26 H 0.264 0.736 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.775 12.163 0.041 12.188 hybrid contribution 0.901 -1.211 0.008 1.510 sum 1.676 10.952 0.050 11.079 Atomic orbital electron populations 1.20582 0.89497 1.02734 1.02334 1.19416 0.97277 0.89184 1.04242 1.21241 0.94398 0.96993 0.99109 1.21197 0.94109 0.96918 1.02230 1.20152 1.00642 0.87039 1.03161 1.20688 0.95634 0.83396 1.12333 1.84333 1.34968 1.16286 1.79622 1.21805 0.79514 0.87211 0.95780 1.39704 1.10724 0.95959 1.67105 1.19950 0.85108 0.90383 1.52024 0.88339 1.26275 1.03082 0.96514 0.95178 1.69748 1.27700 1.09968 1.47740 0.84606 0.75864 0.77736 0.78527 1.18595 1.19393 1.19381 1.70905 1.24885 1.01023 1.39843 1.20091 0.91647 0.92239 1.01796 0.91202 0.93707 0.88686 0.81318 0.80771 0.84140 0.73626 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.70 10.03 71.24 0.71 -1.98 15 2 C -0.10 -3.34 5.91 -19.64 -0.12 -3.46 15 3 C -0.10 -2.51 9.68 22.25 0.22 -2.29 15 4 C -0.13 -3.09 10.03 22.33 0.22 -2.87 15 5 C -0.09 -2.99 10.06 22.29 0.22 -2.76 15 6 C -0.07 -3.08 7.42 22.86 0.17 -2.91 15 7 O -0.26 -13.23 10.11 -14.34 -0.14 -13.38 15 8 C 0.46 24.35 8.82 179.30 1.58 25.93 15 9 N -0.51 -27.56 5.39 -305.34 -1.65 -29.21 15 10 C -0.35 -18.78 9.81 84.03 0.82 -17.96 15 11 H 0.10 5.32 7.39 -2.91 -0.02 5.30 15 12 C -0.01 -0.43 5.50 84.87 0.47 0.04 15 13 N -0.91 -48.81 13.05 21.65 0.28 -48.53 15 14 Si 1.01 40.15 29.55 68.60 2.03 42.17 15 15 H -0.26 -10.13 7.11 99.48 0.71 -9.42 15 16 H -0.27 -10.28 7.11 99.48 0.71 -9.58 15 17 H -0.27 -10.28 7.11 99.48 0.71 -9.57 15 18 N -0.62 -31.51 11.38 -306.36 -3.49 -35.00 15 19 C 0.06 2.56 6.91 39.37 0.27 2.83 15 20 H 0.07 1.86 8.14 -2.39 -0.02 1.84 15 21 H 0.04 1.48 8.09 -2.39 -0.02 1.46 15 22 H 0.09 1.95 8.09 -2.38 -0.02 1.93 15 23 H 0.17 2.73 8.06 -2.91 -0.02 2.70 15 24 H 0.17 2.64 8.06 -2.91 -0.02 2.62 15 25 H 0.14 3.90 8.06 -2.91 -0.02 3.88 15 26 H 0.42 23.26 8.01 -92.71 -0.74 22.52 15 27 H 0.29 14.05 8.31 -92.71 -0.77 13.28 15 Total: -1.00 -64.48 247.17 2.07 -62.42 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: 0.46 Total: 26.96 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: 4.58 Total: -5.44 kcal Atomic # 7 Polarization: -107.88 SS G_CDS: -4.85 Total: -112.73 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.14 Total: -13.38 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.17 kcal Total: -64.48 2.07 -62.42 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260616368.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.962 kcal (2) G-P(sol) polarization free energy of solvation -64.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds