Wall clock time and date at job start Mon Mar 30 2020 02:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.39806 * 125.32330 * 2 1 4 4 C 1.30549 * 110.11613 * 180.02562 * 3 2 1 5 5 O 1.35871 * 126.22112 * 179.97438 * 4 3 2 6 6 C 1.46512 * 107.54997 * 0.26518 * 4 3 2 7 7 C 1.39215 * 133.80924 * 179.71197 * 6 4 3 8 8 C 1.40302 * 119.31340 * 180.02562 * 7 6 4 9 9 C 1.41294 * 120.04064 * 180.02562 * 8 7 6 10 10 H 1.08003 * 120.00325 * 204.66609 * 9 8 7 11 11 C 1.39854 * 119.99951 * 24.66905 * 9 8 7 12 12 N 1.30906 * 119.99781 * 17.98706 * 11 9 8 13 13 Si 1.86796 * 120.00198 * 197.98796 * 11 9 8 14 14 H 1.48499 * 109.47199 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47221 * 120.00333 * 13 11 9 16 16 H 1.48504 * 109.47029 * 239.99980 * 13 11 9 17 17 C 1.41226 * 119.91826 * 359.97438 * 8 7 6 18 18 C 1.35847 * 120.57383 * 359.57763 * 17 8 7 19 19 C 1.36702 * 125.32962 * 180.02562 * 2 1 3 20 20 H 1.09002 * 109.47144 * 89.97894 * 1 2 3 21 21 H 1.09003 * 109.46764 * 209.97527 * 1 2 3 22 22 H 1.09000 * 109.47301 * 329.97822 * 1 2 3 23 23 H 0.96702 * 114.00132 * 90.02781 * 5 4 3 24 24 H 1.07999 * 120.34117 * 0.02562 * 7 6 4 25 25 H 0.96993 * 119.99989 * 179.97438 * 12 11 9 26 26 H 1.07999 * 119.70588 * 179.97438 * 17 8 7 27 27 H 1.08003 * 119.82348 * 179.88303 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2733 1.1407 0.0000 4 6 3.5331 0.7982 -0.0005 5 8 4.5954 1.6454 -0.0012 6 6 3.5930 -0.6656 -0.0074 7 6 4.6362 -1.5875 -0.0159 8 6 4.3408 -2.9590 -0.0214 9 6 5.3876 -3.9080 -0.0296 10 1 5.2155 -4.8986 -0.4240 11 6 6.6467 -3.5646 0.4733 12 7 6.7768 -2.5246 1.2575 13 14 8.1426 -4.5899 0.0258 14 1 7.7308 -5.7027 -0.8672 15 1 9.1369 -3.7363 -0.6724 16 1 8.7490 -5.1463 1.2619 17 6 2.9959 -3.3900 -0.0178 18 6 1.9811 -2.4871 -0.0003 19 6 2.2555 -1.1153 -0.0005 20 1 -0.3633 0.0004 -1.0277 21 1 -0.3633 -0.8902 0.5135 22 1 -0.3634 0.8898 0.5142 23 1 4.9036 1.8905 0.8820 24 1 5.6622 -1.2503 -0.0183 25 1 7.6499 -2.2866 1.6066 26 1 2.7725 -4.4466 -0.0225 27 1 0.9569 -2.8300 0.0004 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260625272.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:45 Heat of formation + Delta-G solvation = 21.572248 kcal Electronic energy + Delta-G solvation = -14056.309522 eV Core-core repulsion = 11586.807239 eV Total energy + Delta-G solvation = -2469.502282 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.80512 -38.44140 -37.79956 -35.09665 -33.43303 -31.13546 -30.62667 -27.73178 -26.03757 -23.58654 -22.41612 -21.64468 -19.25998 -18.84130 -17.54580 -17.27338 -16.43743 -16.24263 -15.48564 -15.33368 -14.72163 -14.43136 -13.81278 -13.60441 -13.48088 -13.10420 -12.78510 -12.72022 -12.41954 -12.02030 -11.89655 -11.53747 -11.01370 -10.96547 -10.35505 -9.36143 -8.60626 -8.51546 -6.15922 0.30752 0.96508 1.43000 1.49775 1.53136 1.57517 1.69572 2.26243 2.72995 3.04595 3.67508 3.88533 4.09722 4.41246 4.53689 4.65581 4.71844 4.90966 4.95832 5.08942 5.32011 5.53825 5.67596 5.73332 6.02575 6.21217 6.44612 6.59856 6.73276 6.83717 6.99055 7.03619 8.42984 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.040467 B = 0.009119 C = 0.007618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.747493 B = 3069.767874 C = 3674.851862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.403 5.403 3 N -0.286 5.286 4 C 0.235 3.765 5 O -0.462 6.462 6 C -0.176 4.176 7 C -0.143 4.143 8 C 0.047 3.953 9 C -0.495 4.495 10 H 0.082 0.918 11 C 0.033 3.967 12 N -0.832 5.832 13 Si 0.978 3.022 14 H -0.256 1.256 15 H -0.271 1.271 16 H -0.268 1.268 17 C -0.144 4.144 18 C -0.117 4.117 19 C 0.032 3.968 20 H 0.075 0.925 21 H 0.102 0.898 22 H 0.093 0.907 23 H 0.411 0.589 24 H 0.102 0.898 25 H 0.284 0.716 26 H 0.128 0.872 27 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.338 1.095 -0.016 6.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.200 5.200 3 N -0.114 5.114 4 C 0.019 3.981 5 O -0.268 6.268 6 C -0.184 4.184 7 C -0.166 4.166 8 C 0.044 3.956 9 C -0.525 4.525 10 H 0.100 0.900 11 C -0.181 4.181 12 N -0.460 5.460 13 Si 0.799 3.201 14 H -0.179 1.179 15 H -0.196 1.196 16 H -0.193 1.193 17 C -0.166 4.166 18 C -0.139 4.139 19 C -0.079 4.079 20 H 0.093 0.907 21 H 0.120 0.880 22 H 0.112 0.888 23 H 0.270 0.730 24 H 0.120 0.880 25 H 0.095 0.905 26 H 0.146 0.854 27 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.104 2.167 -0.471 7.442 hybrid contribution 1.544 -0.669 0.490 1.753 sum -5.560 1.498 0.019 5.758 Atomic orbital electron populations 1.21957 0.71982 1.05238 1.03677 1.47562 1.05962 0.99408 1.67098 1.76125 1.02145 1.10812 1.22312 1.20965 0.86419 0.87249 1.03479 1.84748 1.42803 1.64173 1.35040 1.20217 0.94767 0.92371 1.11001 1.20605 0.96327 0.92007 1.07660 1.17812 0.93049 0.92356 0.92426 1.19711 0.95399 0.99680 1.37727 0.90037 1.26667 1.03019 0.96356 0.92052 1.69915 1.26505 1.25972 1.23559 0.85220 0.76968 0.78830 0.79058 1.17895 1.19614 1.19283 1.21096 0.92131 0.99006 1.04331 1.19687 0.99882 0.87868 1.06456 1.18635 0.89492 0.90052 1.09713 0.90690 0.87956 0.88810 0.73018 0.88015 0.90523 0.85446 0.83972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.79 11.37 127.77 1.45 4.25 15 2 N -0.40 -15.67 4.03 -360.51 -1.45 -17.13 15 3 N -0.29 -12.22 12.41 -166.79 -2.07 -14.29 15 4 C 0.24 10.73 8.74 87.04 0.76 11.49 15 5 O -0.46 -18.47 13.66 -92.10 -1.26 -19.73 15 6 C -0.18 -8.83 6.35 -20.18 -0.13 -8.96 15 7 C -0.14 -7.83 8.75 23.01 0.20 -7.63 15 8 C 0.05 2.47 5.57 -21.29 -0.12 2.35 15 9 C -0.49 -26.14 9.03 23.41 0.21 -25.93 15 10 H 0.08 4.07 7.91 -2.91 -0.02 4.04 15 11 C 0.03 1.64 5.13 85.22 0.44 2.08 15 12 N -0.83 -44.09 10.97 21.81 0.24 -43.85 15 13 Si 0.98 38.42 29.60 68.60 2.03 40.45 15 14 H -0.26 -9.69 7.11 99.48 0.71 -8.98 15 15 H -0.27 -10.48 7.11 99.48 0.71 -9.77 15 16 H -0.27 -10.08 7.11 99.48 0.71 -9.37 15 17 C -0.14 -6.54 9.69 22.45 0.22 -6.32 15 18 C -0.12 -4.76 9.88 22.12 0.22 -4.54 15 19 C 0.03 1.42 6.87 39.49 0.27 1.69 15 20 H 0.07 1.64 8.14 -2.39 -0.02 1.62 15 21 H 0.10 2.08 8.10 -2.39 -0.02 2.06 15 22 H 0.09 2.02 8.14 -2.39 -0.02 2.00 15 23 H 0.41 12.06 9.06 -74.06 -0.67 11.39 15 24 H 0.10 5.92 6.17 -2.91 -0.02 5.90 15 25 H 0.28 13.68 8.30 -92.71 -0.77 12.91 15 26 H 0.13 5.08 8.06 -2.91 -0.02 5.05 15 27 H 0.14 4.41 8.06 -2.91 -0.02 4.39 15 Total: -1.00 -66.38 245.29 1.55 -64.83 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.53 Total: 21.25 kcal Atomic # 6 Polarization: -35.05 SS G_CDS: 3.52 Total: -31.52 kcal Atomic # 7 Polarization: -71.99 SS G_CDS: -3.28 Total: -75.27 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -1.26 Total: -19.73 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Total: -66.38 1.55 -64.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260625272.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.401 kcal (2) G-P(sol) polarization free energy of solvation -66.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds