Wall clock time and date at job start Mon Mar 30 2020 02:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.39785 * 125.26499 * 2 1 4 4 H 0.96996 * 125.18134 * 0.02562 * 3 2 1 5 5 C 1.38040 * 109.64212 * 179.97438 * 3 2 1 6 6 C 1.39468 * 132.74782 * 179.97438 * 5 3 2 7 7 C 1.36221 * 120.39593 * 180.02562 * 6 5 3 8 8 C 1.41037 * 120.46336 * 359.97438 * 7 6 5 9 9 C 1.41222 * 120.10635 * 179.97438 * 8 7 6 10 10 H 1.07993 * 120.00055 * 335.04475 * 9 8 7 11 11 C 1.39853 * 119.99778 * 155.04176 * 9 8 7 12 12 N 1.30907 * 120.00116 * 342.49330 * 11 9 8 13 13 Si 1.86797 * 119.99963 * 162.49815 * 11 9 8 14 14 H 1.48506 * 109.46961 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47403 * 119.99819 * 13 11 9 16 16 H 1.48503 * 109.47061 * 240.00054 * 13 11 9 17 17 C 1.40631 * 119.78632 * 0.25750 * 8 7 6 18 18 C 1.38587 * 119.37460 * 359.48959 * 17 8 7 19 19 C 1.34839 * 125.25995 * 179.97438 * 2 1 3 20 20 O 1.21587 * 126.48006 * 359.97438 * 19 2 1 21 21 H 1.08997 * 109.47060 * 270.00415 * 1 2 3 22 22 H 1.09000 * 109.46984 * 29.99611 * 1 2 3 23 23 H 1.08999 * 109.47219 * 149.99967 * 1 2 3 24 24 H 1.07999 * 119.80552 * 0.04420 * 6 5 3 25 25 H 1.08002 * 119.77075 * 179.97438 * 7 6 5 26 26 H 0.97001 * 120.00057 * 179.97438 * 12 11 9 27 27 H 1.07997 * 120.31108 * 179.72503 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2721 1.1413 0.0000 4 1 1.9475 2.0554 0.0004 5 6 3.6015 0.7696 0.0006 6 6 4.7890 1.5010 0.0004 7 6 5.9921 0.8620 0.0006 8 6 6.0533 -0.5470 0.0016 9 6 7.3046 -1.2017 0.0012 10 1 8.1759 -0.7010 -0.3943 11 6 7.4155 -2.4984 0.5132 12 7 6.4776 -2.9776 1.2906 13 14 8.9019 -3.5466 0.0877 14 1 9.8107 -2.7792 -0.8015 15 1 9.6216 -3.9140 1.3336 16 1 8.4550 -4.7802 -0.6079 17 6 4.8643 -1.2980 -0.0032 18 6 3.6446 -0.6399 0.0020 19 6 2.2435 -1.1010 0.0005 20 8 1.8625 -2.2557 0.0014 21 1 -0.3633 0.0001 1.0276 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5138 24 1 4.7547 2.5804 0.0003 25 1 6.9054 1.4384 0.0000 26 1 6.5543 -3.8772 1.6453 27 1 4.9013 -2.3773 -0.0069 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260636986.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:56 Heat of formation + Delta-G solvation = 46.259444 kcal Electronic energy + Delta-G solvation = -14069.148049 eV Core-core repulsion = 11600.716284 eV Total energy + Delta-G solvation = -2468.431765 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.30977 -36.97367 -35.96471 -33.51968 -31.50294 -29.90390 -28.52368 -26.68539 -24.80580 -21.70381 -20.85894 -19.65925 -17.48009 -17.02342 -15.97561 -15.32266 -15.04400 -14.83403 -14.08961 -13.09074 -12.91590 -12.83597 -12.66500 -12.48921 -11.93725 -11.73707 -11.23729 -11.06067 -10.70103 -10.25787 -10.13970 -9.79471 -9.12348 -8.90922 -8.12395 -7.72574 -6.73385 -6.59430 -4.17891 2.22802 2.44701 2.81389 3.14627 3.18572 3.20451 3.81045 4.01143 4.46325 4.66407 5.24587 5.42986 5.61169 5.63089 5.77886 5.94154 6.28663 6.65741 6.69223 6.94060 7.22152 7.39600 7.45966 7.55657 7.86844 8.09479 8.22273 8.46906 8.57305 8.90080 8.90933 8.96424 10.29073 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.043886 B = 0.008765 C = 0.007468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.859657 B = 3193.790558 C = 3748.328540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.423 5.423 3 N -0.539 5.539 4 H 0.424 0.576 5 C 0.084 3.916 6 C -0.136 4.136 7 C -0.152 4.152 8 C 0.071 3.929 9 C -0.464 4.464 10 H 0.079 0.921 11 C 0.073 3.927 12 N -0.798 5.798 13 Si 0.907 3.093 14 H -0.261 1.261 15 H -0.276 1.276 16 H -0.273 1.273 17 C -0.061 4.061 18 C -0.199 4.199 19 C 0.553 3.447 20 O -0.547 6.547 21 H 0.058 0.942 22 H 0.071 0.929 23 H 0.087 0.913 24 H 0.097 0.903 25 H 0.106 0.894 26 H 0.281 0.719 27 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.484 6.414 -1.780 8.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.245 5.245 3 N -0.272 5.272 4 H 0.266 0.734 5 C -0.018 4.018 6 C -0.159 4.159 7 C -0.172 4.172 8 C 0.068 3.932 9 C -0.494 4.494 10 H 0.097 0.903 11 C -0.144 4.144 12 N -0.424 5.424 13 Si 0.731 3.269 14 H -0.185 1.185 15 H -0.201 1.201 16 H -0.198 1.198 17 C -0.082 4.082 18 C -0.206 4.206 19 C 0.347 3.653 20 O -0.425 6.425 21 H 0.077 0.923 22 H 0.090 0.910 23 H 0.106 0.894 24 H 0.115 0.885 25 H 0.124 0.876 26 H 0.092 0.908 27 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.010 5.518 -1.635 8.321 hybrid contribution 0.275 0.092 0.000 0.290 sum -5.735 5.610 -1.636 8.188 Atomic orbital electron populations 1.21643 0.76016 1.03516 1.02158 1.47310 1.03085 0.99795 1.74283 1.42742 0.99643 0.98976 1.85883 0.73352 1.17832 0.82605 0.93475 1.07853 1.19198 0.89605 0.97024 1.10083 1.20691 0.95062 0.94728 1.06744 1.17447 0.93019 0.90529 0.92201 1.19392 0.95057 0.98616 1.36365 0.90254 1.25862 0.97571 0.98201 0.92741 1.69829 1.33057 1.16965 1.22570 0.86291 0.81453 0.79981 0.79147 1.18493 1.20146 1.19777 1.20927 0.88337 1.00247 0.98723 1.19866 0.93145 0.92983 1.14625 1.18264 0.86972 0.82902 0.77200 1.90731 1.80248 1.17010 1.54506 0.92336 0.91032 0.89408 0.88491 0.87619 0.90816 0.85346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.41 11.32 59.85 0.68 2.09 15 2 N -0.42 -7.95 3.98 -68.14 -0.27 -8.23 15 3 N -0.54 -9.54 7.22 32.62 0.24 -9.30 15 4 H 0.42 5.63 8.96 -182.84 -1.64 3.99 15 5 C 0.08 1.81 7.31 -83.56 -0.61 1.20 15 6 C -0.14 -2.80 9.99 -39.85 -0.40 -3.20 15 7 C -0.15 -3.45 9.70 -39.25 -0.38 -3.83 15 8 C 0.07 1.86 5.57 -106.80 -0.59 1.26 15 9 C -0.46 -12.08 9.03 -37.85 -0.34 -12.43 15 10 H 0.08 1.95 7.90 -52.49 -0.41 1.54 15 11 C 0.07 1.86 5.14 -17.34 -0.09 1.77 15 12 N -0.80 -21.34 10.98 55.54 0.61 -20.73 15 13 Si 0.91 18.90 29.59 -169.99 -5.03 13.87 15 14 H -0.26 -5.32 7.11 56.52 0.40 -4.92 15 15 H -0.28 -5.66 7.11 56.52 0.40 -5.26 15 16 H -0.27 -5.67 7.11 56.52 0.40 -5.27 15 17 C -0.06 -1.65 8.73 -38.55 -0.34 -1.99 15 18 C -0.20 -5.00 6.34 -104.94 -0.67 -5.67 15 19 C 0.55 13.25 8.19 -12.45 -0.10 13.15 15 20 O -0.55 -14.39 17.82 5.29 0.09 -14.30 15 21 H 0.06 0.69 8.14 -51.93 -0.42 0.26 15 22 H 0.07 0.69 8.14 -51.93 -0.42 0.26 15 23 H 0.09 1.14 8.05 -51.93 -0.42 0.72 15 24 H 0.10 1.64 8.06 -52.49 -0.42 1.22 15 25 H 0.11 2.17 8.06 -52.49 -0.42 1.75 15 26 H 0.28 6.90 8.30 -40.82 -0.34 6.56 15 27 H 0.13 3.72 6.20 -52.49 -0.33 3.40 15 LS Contribution 244.05 15.07 3.68 3.68 Total: -1.00 -31.24 244.05 -7.15 -38.39 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -3.62 Total: 4.25 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -2.84 Total: -7.63 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.57 Total: -38.25 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.09 Total: -14.30 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -31.24 -7.15 -38.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260636986.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.646 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds