Wall clock time and date at job start Mon Mar 30 2020 02:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.39785 * 125.26499 * 2 1 4 4 H 0.96996 * 125.18134 * 0.02562 * 3 2 1 5 5 C 1.38040 * 109.64212 * 179.97438 * 3 2 1 6 6 C 1.39468 * 132.74782 * 179.97438 * 5 3 2 7 7 C 1.36221 * 120.39593 * 180.02562 * 6 5 3 8 8 C 1.41037 * 120.46336 * 359.97438 * 7 6 5 9 9 C 1.41222 * 120.10635 * 179.97438 * 8 7 6 10 10 H 1.07993 * 120.00055 * 335.04475 * 9 8 7 11 11 C 1.39853 * 119.99778 * 155.04176 * 9 8 7 12 12 N 1.30907 * 120.00116 * 342.49330 * 11 9 8 13 13 Si 1.86797 * 119.99963 * 162.49815 * 11 9 8 14 14 H 1.48506 * 109.46961 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47403 * 119.99819 * 13 11 9 16 16 H 1.48503 * 109.47061 * 240.00054 * 13 11 9 17 17 C 1.40631 * 119.78632 * 0.25750 * 8 7 6 18 18 C 1.38587 * 119.37460 * 359.48959 * 17 8 7 19 19 C 1.34839 * 125.25995 * 179.97438 * 2 1 3 20 20 O 1.21587 * 126.48006 * 359.97438 * 19 2 1 21 21 H 1.08997 * 109.47060 * 270.00415 * 1 2 3 22 22 H 1.09000 * 109.46984 * 29.99611 * 1 2 3 23 23 H 1.08999 * 109.47219 * 149.99967 * 1 2 3 24 24 H 1.07999 * 119.80552 * 0.04420 * 6 5 3 25 25 H 1.08002 * 119.77075 * 179.97438 * 7 6 5 26 26 H 0.97001 * 120.00057 * 179.97438 * 12 11 9 27 27 H 1.07997 * 120.31108 * 179.72503 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2721 1.1413 0.0000 4 1 1.9475 2.0554 0.0004 5 6 3.6015 0.7696 0.0006 6 6 4.7890 1.5010 0.0004 7 6 5.9921 0.8620 0.0006 8 6 6.0533 -0.5470 0.0016 9 6 7.3046 -1.2017 0.0012 10 1 8.1759 -0.7010 -0.3943 11 6 7.4155 -2.4984 0.5132 12 7 6.4776 -2.9776 1.2906 13 14 8.9019 -3.5466 0.0877 14 1 9.8107 -2.7792 -0.8015 15 1 9.6216 -3.9140 1.3336 16 1 8.4550 -4.7802 -0.6079 17 6 4.8643 -1.2980 -0.0032 18 6 3.6446 -0.6399 0.0020 19 6 2.2435 -1.1010 0.0005 20 8 1.8625 -2.2557 0.0014 21 1 -0.3633 0.0001 1.0276 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5138 24 1 4.7547 2.5804 0.0003 25 1 6.9054 1.4384 0.0000 26 1 6.5543 -3.8772 1.6453 27 1 4.9013 -2.3773 -0.0069 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260636986.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:56 Heat of formation + Delta-G solvation = 24.653567 kcal Electronic energy + Delta-G solvation = -14070.084950 eV Core-core repulsion = 11600.716284 eV Total energy + Delta-G solvation = -2469.368666 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.02293 -38.78501 -37.73557 -35.31700 -33.07996 -31.70000 -30.29308 -28.20970 -26.61137 -23.39420 -22.64688 -21.40380 -19.30824 -18.64571 -17.75036 -16.90634 -16.76705 -16.54961 -15.86671 -14.87958 -14.65806 -14.39345 -14.20772 -13.78483 -13.62187 -13.40144 -12.97488 -12.77017 -12.40090 -12.04247 -11.92255 -11.57815 -10.95522 -10.72283 -9.86679 -9.52522 -8.57511 -8.34688 -6.11356 0.38891 0.97382 1.02240 1.42361 1.51877 1.57867 2.00254 2.26917 2.78630 2.94335 3.71367 4.06499 4.24735 4.30283 4.43355 4.63290 4.67028 4.98690 4.98891 5.13560 5.34914 5.53133 5.67425 5.73079 6.02008 6.19476 6.43949 6.70328 6.89188 7.00481 7.05706 7.31993 8.45063 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.043886 B = 0.008765 C = 0.007468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.859657 B = 3193.790558 C = 3748.328540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.409 5.409 3 N -0.510 5.510 4 H 0.452 0.548 5 C 0.104 3.896 6 C -0.125 4.125 7 C -0.142 4.142 8 C 0.039 3.961 9 C -0.496 4.496 10 H 0.086 0.914 11 C 0.027 3.973 12 N -0.843 5.843 13 Si 0.979 3.021 14 H -0.250 1.250 15 H -0.268 1.268 16 H -0.275 1.275 17 C -0.102 4.102 18 C -0.238 4.238 19 C 0.529 3.471 20 O -0.591 6.591 21 H 0.078 0.922 22 H 0.118 0.882 23 H 0.085 0.915 24 H 0.152 0.848 25 H 0.131 0.869 26 H 0.282 0.718 27 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.075 9.488 -2.146 11.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.228 5.228 3 N -0.245 5.245 4 H 0.300 0.700 5 C -0.001 4.001 6 C -0.147 4.147 7 C -0.162 4.162 8 C 0.036 3.964 9 C -0.526 4.526 10 H 0.105 0.895 11 C -0.185 4.185 12 N -0.470 5.470 13 Si 0.800 3.200 14 H -0.173 1.173 15 H -0.193 1.193 16 H -0.201 1.201 17 C -0.124 4.124 18 C -0.246 4.246 19 C 0.322 3.678 20 O -0.473 6.473 21 H 0.097 0.903 22 H 0.136 0.864 23 H 0.104 0.896 24 H 0.169 0.831 25 H 0.149 0.851 26 H 0.092 0.908 27 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.671 8.698 -2.005 11.144 hybrid contribution 0.276 -0.622 0.104 0.689 sum -6.395 8.076 -1.901 10.475 Atomic orbital electron populations 1.22141 0.72046 1.05762 1.04202 1.47463 1.04906 0.98805 1.71643 1.42735 0.98321 0.99897 1.83519 0.69980 1.18035 0.84652 0.92098 1.05315 1.19646 0.88001 0.99535 1.07538 1.21081 0.97264 0.93490 1.04396 1.17779 0.92797 0.92400 0.93472 1.19705 0.95507 0.99848 1.37583 0.89545 1.26752 1.00437 0.99257 0.92102 1.69949 1.35431 1.17369 1.24300 0.85204 0.77821 0.77856 0.79078 1.17277 1.19328 1.20051 1.20654 0.90120 0.98719 1.02881 1.20170 0.93414 0.95191 1.15804 1.18285 0.87429 0.83579 0.78539 1.90679 1.80823 1.18746 1.57063 0.90349 0.86355 0.89634 0.83090 0.85105 0.90793 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.18 11.32 127.77 1.45 3.63 15 2 N -0.41 -14.37 3.98 -487.71 -1.94 -16.31 15 3 N -0.51 -15.91 7.22 -50.70 -0.37 -16.27 15 4 H 0.45 9.24 8.96 -213.53 -1.91 7.33 15 5 C 0.10 4.21 7.31 39.14 0.29 4.50 15 6 C -0.12 -4.65 9.99 22.10 0.22 -4.43 15 7 C -0.14 -6.20 9.70 22.49 0.22 -5.99 15 8 C 0.04 2.06 5.57 -21.28 -0.12 1.95 15 9 C -0.50 -26.64 9.03 23.39 0.21 -26.43 15 10 H 0.09 4.32 7.90 -2.91 -0.02 4.29 15 11 C 0.03 1.42 5.14 85.22 0.44 1.86 15 12 N -0.84 -47.96 10.98 21.81 0.24 -47.72 15 13 Si 0.98 40.08 29.59 68.60 2.03 42.11 15 14 H -0.25 -9.62 7.11 99.48 0.71 -8.91 15 15 H -0.27 -10.53 7.11 99.48 0.71 -9.82 15 16 H -0.28 -11.23 7.11 99.48 0.71 -10.52 15 17 C -0.10 -5.82 8.73 22.94 0.20 -5.62 15 18 C -0.24 -12.19 6.34 -20.07 -0.13 -12.32 15 19 C 0.53 25.70 8.19 86.68 0.71 26.41 15 20 O -0.59 -32.52 17.82 -3.99 -0.07 -32.59 15 21 H 0.08 1.53 8.14 -2.39 -0.02 1.51 15 22 H 0.12 1.60 8.14 -2.39 -0.02 1.58 15 23 H 0.09 2.04 8.05 -2.39 -0.02 2.02 15 24 H 0.15 4.06 8.06 -2.91 -0.02 4.04 15 25 H 0.13 4.99 8.06 -2.91 -0.02 4.97 15 26 H 0.28 14.81 8.30 -92.71 -0.77 14.04 15 27 H 0.09 5.68 6.20 -2.91 -0.02 5.66 15 Total: -1.00 -73.70 244.05 2.67 -71.03 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -0.71 Total: 16.19 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: 3.49 Total: -16.43 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -2.07 Total: -80.31 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -0.07 Total: -32.59 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -73.70 2.67 -71.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260636986.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.686 kcal (2) G-P(sol) polarization free energy of solvation -73.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds