Wall clock time and date at job start Mon Mar 30 2020 02:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.39843 * 125.20093 * 2 1 4 4 H 0.96992 * 125.36939 * 359.96637 * 3 2 1 5 5 C 1.34884 * 109.26170 * 179.81166 * 3 2 1 6 6 O 1.21598 * 126.50118 * 180.19963 * 5 3 2 7 7 C 1.47424 * 107.00036 * 0.43295 * 5 3 2 8 8 C 1.39442 * 133.43012 * 179.70402 * 7 5 3 9 9 C 1.38489 * 120.27466 * 180.02562 * 8 7 5 10 10 C 1.37759 * 120.67066 * 0.02562 * 9 8 7 11 11 C 1.40679 * 120.28181 * 0.02562 * 10 9 8 12 12 C 1.41026 * 120.29545 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99561 * 150.02660 * 12 11 10 14 14 C 1.39948 * 120.00493 * 330.01841 * 12 11 10 15 15 N 1.30865 * 119.99871 * 348.84329 * 14 12 11 16 16 Si 1.86803 * 120.00249 * 168.83938 * 14 12 11 17 17 H 1.48501 * 109.46886 * 90.00174 * 16 14 12 18 18 H 1.48500 * 109.47461 * 210.00038 * 16 14 12 19 19 H 1.48497 * 109.47031 * 330.00675 * 16 14 12 20 20 C 1.37584 * 125.19741 * 180.30069 * 2 1 3 21 21 H 1.09001 * 109.47462 * 264.56862 * 1 2 3 22 22 H 1.08996 * 109.47083 * 144.56427 * 1 2 3 23 23 H 1.09001 * 109.46498 * 24.56559 * 1 2 3 24 24 H 1.07997 * 119.86154 * 0.03167 * 8 7 5 25 25 H 1.08005 * 119.66079 * 180.02562 * 9 8 7 26 26 H 1.07997 * 119.86103 * 180.02562 * 10 9 8 27 27 H 0.97009 * 120.00006 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2711 1.1427 0.0000 4 1 1.9485 2.0574 -0.0005 5 6 3.5681 0.7723 0.0042 6 8 4.5320 1.5135 0.0088 7 6 3.5955 -0.7017 -0.0036 8 6 4.6257 -1.6413 -0.0090 9 6 4.3356 -2.9955 -0.0165 10 6 3.0298 -3.4343 -0.0194 11 6 1.9703 -2.5088 -0.0152 12 6 0.6334 -2.9578 -0.0187 13 1 -0.1367 -2.3641 0.4513 14 6 0.3047 -4.1724 -0.6311 15 7 1.1826 -4.7839 -1.3847 16 14 -1.3872 -4.9209 -0.3729 17 1 -2.3130 -4.4259 -1.4232 18 1 -1.2917 -6.4006 -0.4546 19 1 -1.9020 -4.5312 0.9644 20 6 2.2581 -1.1243 -0.0059 21 1 -0.3634 -0.0973 1.0230 22 1 -0.3633 -0.8373 -0.5958 23 1 -0.3632 0.9347 -0.4273 24 1 5.6541 -1.3117 -0.0071 25 1 5.1413 -3.7147 -0.0202 26 1 2.8185 -4.4934 -0.0249 27 1 0.9548 -5.6260 -1.8090 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260637157.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:50 Heat of formation + Delta-G solvation = 26.457874 kcal Electronic energy + Delta-G solvation = -14331.083726 eV Core-core repulsion = 11861.793301 eV Total energy + Delta-G solvation = -2469.290426 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.06887 -38.75323 -37.61026 -35.42792 -33.10702 -31.26432 -31.06352 -27.74324 -25.81451 -24.41015 -22.62427 -21.21786 -19.18064 -18.50355 -17.83951 -17.05386 -16.72095 -16.36973 -15.74239 -14.93891 -14.77105 -14.74885 -14.55084 -13.46681 -13.36582 -13.06739 -12.79181 -12.60605 -12.24895 -12.14721 -11.97690 -11.38551 -11.00943 -10.86053 -10.05460 -9.39105 -8.55617 -8.22384 -6.13221 0.41770 0.96365 1.04232 1.48488 1.52279 1.60942 2.02655 2.28804 2.86663 3.00635 3.64073 3.84505 4.37251 4.48939 4.60332 4.64994 4.80136 4.91031 5.01465 5.27650 5.38370 5.46829 5.66461 5.96774 6.11976 6.21392 6.33759 6.63072 6.71851 6.96361 6.99230 7.33172 8.47311 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.036703 B = 0.010846 C = 0.008576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.703364 B = 2581.066322 C = 3264.085534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.414 5.414 3 N -0.494 5.494 4 H 0.445 0.555 5 C 0.540 3.460 6 O -0.589 6.589 7 C -0.248 4.248 8 C -0.143 4.143 9 C -0.136 4.136 10 C -0.144 4.144 11 C 0.067 3.933 12 C -0.488 4.488 13 H 0.094 0.906 14 C 0.035 3.965 15 N -0.835 5.835 16 Si 0.978 3.022 17 H -0.264 1.264 18 H -0.277 1.277 19 H -0.255 1.255 20 C 0.123 3.877 21 H 0.068 0.932 22 H 0.092 0.908 23 H 0.102 0.898 24 H 0.109 0.891 25 H 0.123 0.877 26 H 0.117 0.883 27 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.580 2.838 1.643 7.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.218 5.218 3 N -0.240 5.240 4 H 0.293 0.707 5 C 0.333 3.667 6 O -0.472 6.472 7 C -0.256 4.256 8 C -0.164 4.164 9 C -0.155 4.155 10 C -0.167 4.167 11 C 0.062 3.938 12 C -0.518 4.518 13 H 0.112 0.888 14 C -0.178 4.178 15 N -0.462 5.462 16 Si 0.800 3.200 17 H -0.189 1.189 18 H -0.202 1.202 19 H -0.179 1.179 20 C 0.016 3.984 21 H 0.087 0.913 22 H 0.111 0.889 23 H 0.120 0.880 24 H 0.127 0.873 25 H 0.141 0.859 26 H 0.135 0.865 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.305 3.183 1.498 7.220 hybrid contribution -0.558 -0.003 -0.113 0.569 sum -6.863 3.180 1.385 7.689 Atomic orbital electron populations 1.22202 0.72147 1.05173 1.03453 1.45431 1.02832 0.94571 1.79010 1.45084 1.02881 1.02488 1.73544 0.70687 1.18062 0.81550 0.89071 0.78037 1.90716 1.37225 1.61565 1.57667 1.20010 0.94845 0.93076 1.17691 1.20051 0.96511 0.91874 1.08011 1.20790 0.96751 0.94339 1.03645 1.21152 0.91142 0.99175 1.05197 1.17010 0.95538 0.85986 0.95300 1.19691 0.93524 1.05417 1.33210 0.88782 1.26610 1.02604 0.96372 0.92251 1.69861 1.37583 1.15750 1.23053 0.85243 0.77296 0.77564 0.79907 1.18874 1.20211 1.17905 1.18757 0.88584 0.88352 1.02681 0.91320 0.88947 0.87984 0.87328 0.85940 0.86504 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.07 10.10 127.77 1.29 4.36 15 2 N -0.41 -15.74 4.06 -359.18 -1.46 -17.20 15 3 N -0.49 -17.76 7.11 -175.77 -1.25 -19.01 15 4 H 0.44 11.91 8.96 -213.49 -1.91 9.99 15 5 C 0.54 24.45 8.63 86.65 0.75 25.20 15 6 O -0.59 -29.11 18.05 -4.03 -0.07 -29.18 15 7 C -0.25 -11.96 6.35 -20.08 -0.13 -12.09 15 8 C -0.14 -6.72 10.09 22.62 0.23 -6.49 15 9 C -0.14 -6.21 10.00 22.22 0.22 -5.99 15 10 C -0.14 -7.16 8.63 22.75 0.20 -6.97 15 11 C 0.07 3.32 5.54 -21.22 -0.12 3.20 15 12 C -0.49 -22.77 7.72 23.37 0.18 -22.59 15 13 H 0.09 3.95 5.83 -2.91 -0.02 3.94 15 14 C 0.04 1.59 5.23 85.25 0.45 2.04 15 15 N -0.84 -40.52 10.94 21.83 0.24 -40.28 15 16 Si 0.98 34.19 29.57 68.60 2.03 36.22 15 17 H -0.26 -8.87 7.11 99.48 0.71 -8.16 15 18 H -0.28 -9.65 7.11 99.48 0.71 -8.95 15 19 H -0.26 -8.58 7.11 99.48 0.71 -7.87 15 20 C 0.12 5.74 6.83 39.51 0.27 6.01 15 21 H 0.07 1.72 8.14 -2.39 -0.02 1.70 15 22 H 0.09 2.86 6.11 -2.39 -0.01 2.84 15 23 H 0.10 2.00 8.14 -2.39 -0.02 1.98 15 24 H 0.11 4.74 8.06 -2.91 -0.02 4.72 15 25 H 0.12 4.83 8.06 -2.91 -0.02 4.81 15 26 H 0.12 5.96 6.31 -2.91 -0.02 5.94 15 27 H 0.29 12.68 8.30 -92.70 -0.77 11.92 15 Total: -1.00 -62.03 238.09 2.13 -59.90 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: -0.70 Total: 22.86 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 3.34 Total: -13.31 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -2.47 Total: -76.49 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.07 Total: -29.18 kcal Atomic # 14 Polarization: 34.19 SS G_CDS: 2.03 Total: 36.22 kcal Total: -62.03 2.13 -59.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260637157.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.356 kcal (2) G-P(sol) polarization free energy of solvation -62.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds