Wall clock time and date at job start Mon Mar 30 2020 02:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35635 * 117.00051 * 2 1 4 4 C 1.40756 * 120.31887 * 0.02562 * 3 2 1 5 5 C 1.35112 * 120.32733 * 180.02562 * 4 3 2 6 6 N 1.36406 * 120.78523 * 359.97438 * 5 4 3 7 7 C 1.37936 * 132.93328 * 179.97438 * 6 5 4 8 8 C 1.39505 * 125.64358 * 0.03066 * 7 6 5 9 9 H 1.08002 * 119.99685 * 6.21226 * 8 7 6 10 10 C 1.39820 * 120.00008 * 186.21522 * 8 7 6 11 11 N 1.31020 * 119.99806 * 183.91581 * 10 8 7 12 12 Si 1.86796 * 120.00091 * 3.91413 * 10 8 7 13 13 H 1.48497 * 109.47244 * 179.97438 * 12 10 8 14 14 H 1.48507 * 109.47178 * 300.00239 * 12 10 8 15 15 H 1.48505 * 109.47009 * 59.99967 * 12 10 8 16 16 N 1.33414 * 108.71285 * 180.28436 * 7 6 5 17 17 C 1.32120 * 109.91750 * 359.56201 * 16 7 6 18 18 C 1.37866 * 120.44227 * 359.97438 * 6 5 4 19 19 C 1.38524 * 120.31168 * 179.97438 * 3 2 1 20 20 H 1.09002 * 109.46826 * 59.99501 * 1 2 3 21 21 H 1.08997 * 109.47456 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47199 * 300.00236 * 1 2 3 23 23 H 1.08005 * 119.83462 * 359.97438 * 4 3 2 24 24 H 1.07999 * 119.60553 * 179.97438 * 5 4 3 25 25 H 0.97001 * 119.99978 * 354.83531 * 11 10 8 26 26 H 1.08001 * 125.94816 * 180.13253 * 17 16 7 27 27 H 1.08002 * 120.48284 * 359.97438 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 6 1.2848 2.3932 0.0005 5 6 1.8980 3.5972 0.0000 6 7 3.2591 3.6874 -0.0005 7 6 4.1298 4.7573 -0.0015 8 6 3.7636 6.1034 -0.0017 9 1 2.7247 6.3804 0.1002 10 6 4.7416 7.0939 -0.1339 11 7 4.4077 8.3585 -0.0572 12 14 6.5241 6.6142 -0.4198 13 1 7.3558 7.8399 -0.5253 14 1 7.0026 5.7870 0.7169 15 1 6.6310 5.8342 -1.6790 16 7 5.3800 4.2916 -0.0079 17 6 5.3683 2.9705 -0.0016 18 6 4.0347 2.5476 0.0000 19 6 3.4277 1.2885 0.0005 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.2061 2.3396 0.0005 24 1 1.3035 4.4988 0.0000 25 1 3.4737 8.6100 0.0161 26 1 6.2370 2.3287 -0.0025 27 1 4.0285 0.3910 0.0014 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260640869.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:44 Heat of formation + Delta-G solvation = 31.459733 kcal Electronic energy + Delta-G solvation = -14079.539852 eV Core-core repulsion = 11610.466323 eV Total energy + Delta-G solvation = -2469.073529 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.23413 -38.79901 -35.52993 -33.67529 -31.84784 -29.82510 -28.65360 -26.92170 -24.30323 -22.84813 -21.05684 -20.58470 -18.23340 -17.24435 -16.55193 -15.68670 -15.45717 -14.83628 -14.40724 -13.77793 -13.66950 -13.25416 -12.90794 -12.18457 -12.06155 -11.94920 -11.75038 -11.03381 -10.70832 -10.48873 -10.26971 -9.71910 -9.39063 -8.92517 -8.29864 -8.17746 -7.39827 -6.75877 -4.47527 1.64760 2.22549 3.52666 3.58873 3.67469 3.80379 4.03903 4.14185 4.35010 4.43848 5.05252 5.18238 5.26963 5.27113 5.38446 5.55500 5.74808 5.89207 5.98857 6.21472 6.52779 6.62977 6.82793 7.11787 7.38936 7.48621 7.69302 7.88567 8.09244 8.48699 8.65019 9.28202 10.02175 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.057374 B = 0.008466 C = 0.007424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.910109 B = 3306.418227 C = 3770.470641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.320 6.320 3 C 0.056 3.944 4 C -0.241 4.241 5 C 0.131 3.869 6 N -0.425 5.425 7 C 0.353 3.647 8 C -0.491 4.491 9 H 0.081 0.919 10 C 0.059 3.941 11 N -0.813 5.813 12 Si 1.128 2.872 13 H -0.320 1.320 14 H -0.267 1.267 15 H -0.284 1.284 16 N -0.558 5.558 17 C 0.023 3.977 18 C -0.086 4.086 19 C -0.096 4.096 20 H 0.048 0.952 21 H 0.091 0.909 22 H 0.048 0.952 23 H 0.132 0.868 24 H 0.148 0.852 25 H 0.282 0.718 26 H 0.159 0.841 27 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.160 -9.937 -0.172 11.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.235 6.235 3 C 0.010 3.990 4 C -0.265 4.265 5 C 0.007 3.993 6 N -0.103 5.103 7 C 0.118 3.882 8 C -0.531 4.531 9 H 0.099 0.901 10 C -0.162 4.162 11 N -0.437 5.437 12 Si 0.959 3.041 13 H -0.251 1.251 14 H -0.193 1.193 15 H -0.211 1.211 16 N -0.281 5.281 17 C -0.131 4.131 18 C -0.189 4.189 19 C -0.117 4.117 20 H 0.067 0.933 21 H 0.109 0.891 22 H 0.067 0.933 23 H 0.150 0.850 24 H 0.166 0.834 25 H 0.093 0.907 26 H 0.176 0.824 27 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.946 -8.899 -0.314 9.739 hybrid contribution -3.030 -0.983 0.206 3.192 sum -6.976 -9.882 -0.107 12.096 Atomic orbital electron populations 1.22874 0.79649 1.02824 1.00819 1.85897 1.20260 1.27172 1.90137 1.18629 0.91650 0.83327 1.05355 1.20483 0.99536 0.91288 1.15157 1.21121 0.83065 0.98414 0.96686 1.42794 1.04289 1.08358 1.54875 1.20365 0.82115 0.88184 0.97554 1.19332 0.97510 0.87566 1.48653 0.90139 1.27401 1.08479 0.91403 0.88936 1.70760 1.22153 1.17663 1.33143 0.82406 0.70380 0.71505 0.79813 1.25096 1.19290 1.21136 1.69474 1.17989 1.09778 1.30862 1.22217 0.92776 0.91482 1.06626 1.18687 0.92123 0.85702 1.22406 1.19426 0.90623 0.95249 1.06439 0.93291 0.89106 0.93309 0.84984 0.83415 0.90738 0.82391 0.85264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.82 101.05 0.99 1.37 15 2 O -0.32 -5.18 10.49 -18.61 -0.20 -5.37 15 3 C 0.06 1.04 6.74 -38.53 -0.26 0.78 15 4 C -0.24 -4.20 8.98 -39.74 -0.36 -4.56 15 5 C 0.13 2.61 10.80 -16.63 -0.18 2.43 15 6 N -0.42 -10.09 3.00 -60.29 -0.18 -10.27 15 7 C 0.35 9.32 7.23 -155.04 -1.12 8.20 15 8 C -0.49 -13.24 9.63 -38.52 -0.37 -13.61 15 9 H 0.08 2.12 7.90 -52.49 -0.41 1.70 15 10 C 0.06 1.59 5.52 -17.31 -0.10 1.49 15 11 N -0.81 -22.00 13.67 55.54 0.76 -21.24 15 12 Si 1.13 27.85 25.83 -169.99 -4.39 23.46 15 13 H -0.32 -7.69 7.11 56.52 0.40 -7.29 15 14 H -0.27 -6.64 6.74 56.52 0.38 -6.26 15 15 H -0.28 -7.08 7.11 56.52 0.40 -6.68 15 16 N -0.56 -14.60 6.26 -11.89 -0.07 -14.67 15 17 C 0.02 0.52 12.01 -16.81 -0.20 0.32 15 18 C -0.09 -1.95 6.80 -83.95 -0.57 -2.52 15 19 C -0.10 -1.91 10.11 -38.90 -0.39 -2.30 15 20 H 0.05 0.51 7.68 -51.93 -0.40 0.11 15 21 H 0.09 0.78 8.14 -51.93 -0.42 0.35 15 22 H 0.05 0.51 7.68 -51.93 -0.40 0.11 15 23 H 0.13 1.82 6.37 -52.48 -0.33 1.49 15 24 H 0.15 2.62 7.91 -52.49 -0.42 2.20 15 25 H 0.28 7.26 8.73 -40.82 -0.36 6.90 15 26 H 0.16 3.02 8.06 -52.49 -0.42 2.60 15 27 H 0.13 2.24 8.06 -52.49 -0.42 1.81 15 LS Contribution 238.34 15.07 3.59 3.59 Total: -1.00 -30.41 238.34 -5.45 -35.86 By element: Atomic # 1 Polarization: -0.55 SS G_CDS: -2.40 Total: -2.95 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -2.56 Total: -8.40 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.50 Total: -46.18 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.20 Total: -5.37 kcal Atomic # 14 Polarization: 27.85 SS G_CDS: -4.39 Total: 23.46 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -30.41 -5.45 -35.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260640869.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.317 kcal (2) G-P(sol) polarization free energy of solvation -30.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds