Wall clock time and date at job start Mon Mar 30 2020 02:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35635 * 117.00051 * 2 1 4 4 C 1.40756 * 120.31887 * 0.02562 * 3 2 1 5 5 C 1.35112 * 120.32733 * 180.02562 * 4 3 2 6 6 N 1.36406 * 120.78523 * 359.97438 * 5 4 3 7 7 C 1.37936 * 132.93328 * 179.97438 * 6 5 4 8 8 C 1.39505 * 125.64358 * 0.03066 * 7 6 5 9 9 H 1.08002 * 119.99685 * 6.21226 * 8 7 6 10 10 C 1.39820 * 120.00008 * 186.21522 * 8 7 6 11 11 N 1.31020 * 119.99806 * 183.91581 * 10 8 7 12 12 Si 1.86796 * 120.00091 * 3.91413 * 10 8 7 13 13 H 1.48497 * 109.47244 * 179.97438 * 12 10 8 14 14 H 1.48507 * 109.47178 * 300.00239 * 12 10 8 15 15 H 1.48505 * 109.47009 * 59.99967 * 12 10 8 16 16 N 1.33414 * 108.71285 * 180.28436 * 7 6 5 17 17 C 1.32120 * 109.91750 * 359.56201 * 16 7 6 18 18 C 1.37866 * 120.44227 * 359.97438 * 6 5 4 19 19 C 1.38524 * 120.31168 * 179.97438 * 3 2 1 20 20 H 1.09002 * 109.46826 * 59.99501 * 1 2 3 21 21 H 1.08997 * 109.47456 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47199 * 300.00236 * 1 2 3 23 23 H 1.08005 * 119.83462 * 359.97438 * 4 3 2 24 24 H 1.07999 * 119.60553 * 179.97438 * 5 4 3 25 25 H 0.97001 * 119.99978 * 354.83531 * 11 10 8 26 26 H 1.08001 * 125.94816 * 180.13253 * 17 16 7 27 27 H 1.08002 * 120.48284 * 359.97438 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 6 1.2848 2.3932 0.0005 5 6 1.8980 3.5972 0.0000 6 7 3.2591 3.6874 -0.0005 7 6 4.1298 4.7573 -0.0015 8 6 3.7636 6.1034 -0.0017 9 1 2.7247 6.3804 0.1002 10 6 4.7416 7.0939 -0.1339 11 7 4.4077 8.3585 -0.0572 12 14 6.5241 6.6142 -0.4198 13 1 7.3558 7.8399 -0.5253 14 1 7.0026 5.7870 0.7169 15 1 6.6310 5.8342 -1.6790 16 7 5.3800 4.2916 -0.0079 17 6 5.3683 2.9705 -0.0016 18 6 4.0347 2.5476 0.0000 19 6 3.4277 1.2885 0.0005 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.2061 2.3396 0.0005 24 1 1.3035 4.4988 0.0000 25 1 3.4737 8.6100 0.0161 26 1 6.2370 2.3287 -0.0025 27 1 4.0285 0.3910 0.0014 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260640869.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:44 Heat of formation + Delta-G solvation = 12.775319 kcal Electronic energy + Delta-G solvation = -14080.350069 eV Core-core repulsion = 11610.466323 eV Total energy + Delta-G solvation = -2469.883746 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.00256 -40.19261 -37.15924 -35.60036 -33.50072 -31.52010 -30.30003 -28.16583 -25.97553 -24.47644 -22.71263 -22.42564 -20.08084 -18.70424 -18.23053 -17.18224 -16.75260 -16.37636 -16.05944 -15.62877 -15.47971 -14.70345 -14.57669 -13.92064 -13.78919 -13.26967 -13.16975 -12.61674 -12.36313 -12.04964 -11.99460 -11.67944 -11.27534 -10.62012 -10.08784 -9.96652 -9.40139 -8.53298 -6.37299 0.05937 0.54361 1.58744 1.61740 2.00502 2.15870 2.26296 2.41955 2.49254 2.68531 3.19023 3.60697 3.97901 4.16649 4.23230 4.35991 4.44191 4.44538 4.64361 4.76012 4.92463 5.09435 5.17057 5.37123 5.43262 5.82392 5.85204 6.20477 6.46801 6.59414 6.80891 7.43540 8.04099 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.057374 B = 0.008466 C = 0.007424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.910109 B = 3306.418227 C = 3770.470641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.327 6.327 3 C 0.083 3.917 4 C -0.213 4.213 5 C 0.094 3.906 6 N -0.427 5.427 7 C 0.319 3.681 8 C -0.516 4.516 9 H 0.072 0.928 10 C 0.031 3.969 11 N -0.841 5.841 12 Si 1.162 2.838 13 H -0.313 1.313 14 H -0.274 1.274 15 H -0.292 1.292 16 N -0.574 5.574 17 C -0.019 4.019 18 C -0.067 4.067 19 C -0.128 4.128 20 H 0.062 0.938 21 H 0.122 0.878 22 H 0.062 0.938 23 H 0.178 0.822 24 H 0.164 0.836 25 H 0.280 0.720 26 H 0.189 0.811 27 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.019 -12.841 -0.198 15.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.241 6.241 3 C 0.036 3.964 4 C -0.235 4.235 5 C -0.028 4.028 6 N -0.104 5.104 7 C 0.080 3.920 8 C -0.556 4.556 9 H 0.090 0.910 10 C -0.185 4.185 11 N -0.467 5.467 12 Si 0.992 3.008 13 H -0.244 1.244 14 H -0.201 1.201 15 H -0.219 1.219 16 N -0.297 5.297 17 C -0.170 4.170 18 C -0.171 4.171 19 C -0.149 4.149 20 H 0.081 0.919 21 H 0.140 0.860 22 H 0.081 0.919 23 H 0.195 0.805 24 H 0.181 0.819 25 H 0.091 0.909 26 H 0.206 0.794 27 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.843 -11.837 -0.339 13.205 hybrid contribution -2.782 -0.567 0.222 2.848 sum -8.625 -12.404 -0.117 15.109 Atomic orbital electron populations 1.23336 0.76565 1.05564 1.02094 1.85933 1.23303 1.25587 1.89247 1.18868 0.91596 0.84619 1.01331 1.21032 1.01775 0.89778 1.10940 1.21669 0.81868 1.00446 0.98791 1.43012 1.05767 1.08054 1.53617 1.20299 0.82937 0.88591 1.00197 1.19253 0.97122 0.88288 1.50928 0.90974 1.27941 1.10074 0.91526 0.88945 1.70773 1.22072 1.17838 1.36025 0.81928 0.68897 0.71068 0.78903 1.24431 1.20068 1.21942 1.69336 1.18443 1.11513 1.30426 1.22747 0.94366 0.90843 1.09080 1.19247 0.92239 0.86516 1.19129 1.19681 0.91931 0.94809 1.08456 0.91925 0.86009 0.91940 0.80460 0.81906 0.90928 0.79361 0.82896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.82 113.37 1.11 1.42 15 2 O -0.33 -8.83 10.49 -89.49 -0.94 -9.77 15 3 C 0.08 2.70 6.74 22.95 0.15 2.85 15 4 C -0.21 -6.47 8.98 22.17 0.20 -6.27 15 5 C 0.09 3.55 10.80 83.26 0.90 4.45 15 6 N -0.43 -19.99 3.00 -344.65 -1.03 -21.02 15 7 C 0.32 17.12 7.23 133.21 0.96 18.08 15 8 C -0.52 -28.78 9.63 22.96 0.22 -28.56 15 9 H 0.07 3.96 7.90 -2.91 -0.02 3.94 15 10 C 0.03 1.75 5.52 85.20 0.47 2.22 15 11 N -0.84 -47.08 13.67 21.82 0.30 -46.78 15 12 Si 1.16 58.36 25.83 68.60 1.77 60.13 15 13 H -0.31 -15.09 7.11 99.48 0.71 -14.38 15 14 H -0.27 -13.88 6.74 99.48 0.67 -13.21 15 15 H -0.29 -14.78 7.11 99.48 0.71 -14.07 15 16 N -0.57 -30.40 6.26 -191.52 -1.20 -31.59 15 17 C -0.02 -0.86 12.01 85.05 1.02 0.16 15 18 C -0.07 -2.94 6.80 38.97 0.27 -2.67 15 19 C -0.13 -4.67 10.11 22.71 0.23 -4.44 15 20 H 0.06 0.92 7.68 -2.39 -0.02 0.90 15 21 H 0.12 1.34 8.14 -2.39 -0.02 1.32 15 22 H 0.06 0.91 7.68 -2.39 -0.02 0.89 15 23 H 0.18 3.77 6.37 -2.91 -0.02 3.75 15 24 H 0.16 5.54 7.91 -2.91 -0.02 5.51 15 25 H 0.28 15.06 8.73 -92.71 -0.81 14.25 15 26 H 0.19 7.01 8.06 -2.91 -0.02 6.99 15 27 H 0.15 4.77 8.06 -2.91 -0.02 4.75 15 Total: -1.00 -66.69 238.34 5.54 -61.14 By element: Atomic # 1 Polarization: -0.46 SS G_CDS: 1.11 Total: 0.65 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: 5.54 Total: -12.76 kcal Atomic # 7 Polarization: -97.46 SS G_CDS: -1.93 Total: -99.40 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.94 Total: -9.77 kcal Atomic # 14 Polarization: 58.36 SS G_CDS: 1.77 Total: 60.13 kcal Total: -66.69 5.54 -61.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260640869.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.917 kcal (2) G-P(sol) polarization free energy of solvation -66.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds