Wall clock time and date at job start Mon Mar 30 2020 02:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35240 * 117.00113 * 2 1 4 4 C 1.36495 * 119.73749 * 1.38621 * 3 2 1 5 5 C 1.39697 * 120.30979 * 179.97438 * 4 3 2 6 6 C 1.38035 * 119.60080 * 0.02562 * 5 4 3 7 7 C 1.39856 * 119.26700 * 359.97438 * 6 5 4 8 8 C 1.39790 * 133.37537 * 179.97438 * 7 6 5 9 9 N 1.32141 * 108.13474 * 180.02562 * 8 7 6 10 10 C 1.33413 * 109.92869 * 359.97438 * 9 8 7 11 11 C 1.39490 * 125.65731 * 180.02562 * 10 9 8 12 12 H 1.08009 * 119.99604 * 169.56123 * 11 10 9 13 13 C 1.39811 * 120.00208 * 349.56295 * 11 10 9 14 14 N 1.31017 * 119.99783 * 162.78420 * 13 11 10 15 15 Si 1.86801 * 119.99983 * 342.78081 * 13 11 10 16 16 H 1.48501 * 109.46818 * 84.80262 * 15 13 11 17 17 H 1.48496 * 109.47299 * 204.80275 * 15 13 11 18 18 H 1.48502 * 109.47073 * 324.80282 * 15 13 11 19 19 N 1.36494 * 119.73708 * 181.10986 * 3 2 1 20 20 H 1.09006 * 109.47059 * 175.59244 * 1 2 3 21 21 H 1.08994 * 109.47175 * 295.59211 * 1 2 3 22 22 H 1.08996 * 109.46906 * 55.59233 * 1 2 3 23 23 H 1.08000 * 119.84414 * 359.97438 * 4 3 2 24 24 H 1.08002 * 120.20191 * 180.02562 * 5 4 3 25 25 H 1.07994 * 120.37081 * 180.02562 * 6 5 4 26 26 H 1.08006 * 125.92904 * 0.02574 * 8 7 6 27 27 H 0.97005 * 119.99210 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0430 1.2050 0.0000 4 6 1.2947 2.3462 0.0287 5 6 1.9165 3.5971 0.0295 6 6 3.2944 3.6737 0.0007 7 6 4.0443 2.4935 -0.0285 8 6 5.4165 2.2285 -0.0614 9 7 5.5818 0.9176 -0.0797 10 6 4.3947 0.3091 -0.0600 11 6 4.1877 -1.0703 -0.0702 12 1 3.2018 -1.4697 0.1168 13 6 5.2563 -1.9357 -0.3225 14 7 5.1604 -3.2040 -0.0082 15 14 6.8209 -1.2838 -1.1078 16 1 7.7052 -0.7208 -0.0559 17 1 7.5234 -2.3909 -1.8048 18 1 6.4777 -0.2212 -2.0869 19 7 3.4062 1.2702 -0.0230 20 1 -0.3633 -1.0247 -0.0790 21 1 -0.3633 0.4439 0.9268 22 1 -0.3633 0.5807 -0.8478 23 1 0.2169 2.2817 0.0508 24 1 1.3227 4.4990 0.0527 25 1 3.7881 4.6342 0.0014 26 1 6.2045 2.9670 -0.0704 27 1 5.9021 -3.8043 -0.1830 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260651656.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:21 Heat of formation + Delta-G solvation = 43.885201 kcal Electronic energy + Delta-G solvation = -14445.894047 eV Core-core repulsion = 11977.359327 eV Total energy + Delta-G solvation = -2468.534720 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.23443 -38.68779 -35.57583 -33.42846 -32.00212 -29.64379 -28.22737 -27.26493 -24.69633 -22.28640 -21.20064 -20.59074 -18.12259 -16.71285 -16.21277 -15.74612 -15.53535 -14.71500 -14.38123 -14.02330 -13.81258 -13.05469 -12.57633 -12.06093 -11.91424 -11.56074 -11.20294 -11.02037 -10.73958 -10.67866 -10.34398 -10.13685 -9.39236 -9.07372 -8.45416 -8.08356 -6.92646 -6.63446 -4.33892 1.86936 2.29860 2.98845 3.40479 3.43804 3.60182 4.07726 4.28839 4.41443 4.47565 5.21473 5.22942 5.35684 5.53225 5.62307 5.70623 5.87943 5.93392 6.05744 6.42567 6.77118 6.85894 6.92136 7.12973 7.27437 7.50218 7.96139 8.12639 8.21517 8.54955 8.76147 9.40119 10.04919 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.031643 B = 0.012959 C = 0.009409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.671708 B = 2160.089370 C = 2975.184720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.305 6.305 3 C 0.340 3.660 4 C -0.292 4.292 5 C -0.144 4.144 6 C -0.089 4.089 7 C -0.094 4.094 8 C 0.029 3.971 9 N -0.563 5.563 10 C 0.354 3.646 11 C -0.417 4.417 12 H 0.108 0.892 13 C 0.099 3.901 14 N -0.800 5.800 15 Si 0.971 3.029 16 H -0.264 1.264 17 H -0.316 1.316 18 H -0.263 1.263 19 N -0.417 5.417 20 H 0.101 0.899 21 H 0.055 0.945 22 H 0.057 0.943 23 H 0.128 0.872 24 H 0.113 0.887 25 H 0.122 0.878 26 H 0.159 0.841 27 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.418 6.635 -0.738 9.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.215 6.215 3 C 0.191 3.809 4 C -0.316 4.316 5 C -0.165 4.165 6 C -0.109 4.109 7 C -0.196 4.196 8 C -0.126 4.126 9 N -0.285 5.285 10 C 0.121 3.879 11 C -0.455 4.455 12 H 0.126 0.874 13 C -0.125 4.125 14 N -0.425 5.425 15 Si 0.801 3.199 16 H -0.189 1.189 17 H -0.246 1.246 18 H -0.188 1.188 19 N -0.103 5.103 20 H 0.120 0.880 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.145 0.855 24 H 0.131 0.869 25 H 0.140 0.860 26 H 0.176 0.824 27 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.560 5.697 -0.706 7.992 hybrid contribution -0.497 0.724 -0.199 0.900 sum -6.057 6.421 -0.905 8.873 Atomic orbital electron populations 1.23056 0.77317 1.03877 1.01357 1.85931 1.21545 1.26169 1.87831 1.18290 0.82277 0.85198 0.95184 1.20033 0.98578 0.90940 1.22022 1.20444 0.93692 0.95865 1.06480 1.20243 0.92977 0.95190 1.02455 1.18831 0.92870 0.84113 1.23824 1.22275 0.91495 0.93088 1.05721 1.69685 1.21844 1.06045 1.30974 1.20270 0.79828 0.90456 0.97358 1.18184 0.99117 0.85375 1.42831 0.87441 1.25960 1.00769 0.93959 0.91770 1.69709 1.33847 1.05192 1.33739 0.85117 0.78906 0.75728 0.80162 1.18914 1.24645 1.18804 1.42333 1.01878 1.08990 1.57065 0.88032 0.92603 0.92487 0.85471 0.86893 0.85998 0.82417 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 9.80 101.05 0.99 1.54 15 2 O -0.30 -6.35 8.62 -17.41 -0.15 -6.50 15 3 C 0.34 7.55 7.65 -16.11 -0.12 7.43 15 4 C -0.29 -5.44 8.98 -39.67 -0.36 -5.80 15 5 C -0.14 -2.57 10.12 -39.11 -0.40 -2.97 15 6 C -0.09 -1.70 10.15 -39.05 -0.40 -2.10 15 7 C -0.09 -2.19 6.81 -83.92 -0.57 -2.76 15 8 C 0.03 0.68 12.01 -16.84 -0.20 0.48 15 9 N -0.56 -15.19 7.02 -11.92 -0.08 -15.27 15 10 C 0.35 9.80 7.09 -155.06 -1.10 8.70 15 11 C -0.42 -11.89 9.47 -38.53 -0.36 -12.25 15 12 H 0.11 3.14 6.58 -52.48 -0.35 2.79 15 13 C 0.10 2.71 5.51 -17.31 -0.10 2.62 15 14 N -0.80 -21.71 13.94 55.54 0.77 -20.93 15 15 Si 0.97 24.19 25.65 -169.99 -4.36 19.83 15 16 H -0.26 -6.69 7.11 56.52 0.40 -6.28 15 17 H -0.32 -7.43 7.11 56.52 0.40 -7.03 15 18 H -0.26 -6.85 6.97 56.52 0.39 -6.46 15 19 N -0.42 -10.58 3.00 -60.36 -0.18 -10.76 15 20 H 0.10 1.17 8.14 -51.93 -0.42 0.75 15 21 H 0.06 0.67 7.81 -51.93 -0.41 0.27 15 22 H 0.06 0.69 7.42 -51.93 -0.39 0.30 15 23 H 0.13 1.91 6.16 -52.49 -0.32 1.59 15 24 H 0.11 1.63 8.06 -52.49 -0.42 1.21 15 25 H 0.12 1.92 8.06 -52.49 -0.42 1.50 15 26 H 0.16 3.05 8.06 -52.48 -0.42 2.63 15 27 H 0.29 7.11 8.30 -40.82 -0.34 6.77 15 LS Contribution 235.60 15.07 3.55 3.55 Total: -1.00 -31.81 235.60 -5.36 -37.17 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: -2.29 Total: -1.97 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -2.62 Total: -5.12 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.51 Total: -46.96 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.15 Total: -6.50 kcal Atomic # 14 Polarization: 24.19 SS G_CDS: -4.36 Total: 19.83 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -31.81 -5.36 -37.17 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260651656.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.054 kcal (2) G-P(sol) polarization free energy of solvation -31.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds