Wall clock time and date at job start Mon Mar 30 2020 02:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35240 * 117.00113 * 2 1 4 4 C 1.36495 * 119.73749 * 1.38621 * 3 2 1 5 5 C 1.39697 * 120.30979 * 179.97438 * 4 3 2 6 6 C 1.38035 * 119.60080 * 0.02562 * 5 4 3 7 7 C 1.39856 * 119.26700 * 359.97438 * 6 5 4 8 8 C 1.39790 * 133.37537 * 179.97438 * 7 6 5 9 9 N 1.32141 * 108.13474 * 180.02562 * 8 7 6 10 10 C 1.33413 * 109.92869 * 359.97438 * 9 8 7 11 11 C 1.39490 * 125.65731 * 180.02562 * 10 9 8 12 12 H 1.08009 * 119.99604 * 169.56123 * 11 10 9 13 13 C 1.39811 * 120.00208 * 349.56295 * 11 10 9 14 14 N 1.31017 * 119.99783 * 162.78420 * 13 11 10 15 15 Si 1.86801 * 119.99983 * 342.78081 * 13 11 10 16 16 H 1.48501 * 109.46818 * 84.80262 * 15 13 11 17 17 H 1.48496 * 109.47299 * 204.80275 * 15 13 11 18 18 H 1.48502 * 109.47073 * 324.80282 * 15 13 11 19 19 N 1.36494 * 119.73708 * 181.10986 * 3 2 1 20 20 H 1.09006 * 109.47059 * 175.59244 * 1 2 3 21 21 H 1.08994 * 109.47175 * 295.59211 * 1 2 3 22 22 H 1.08996 * 109.46906 * 55.59233 * 1 2 3 23 23 H 1.08000 * 119.84414 * 359.97438 * 4 3 2 24 24 H 1.08002 * 120.20191 * 180.02562 * 5 4 3 25 25 H 1.07994 * 120.37081 * 180.02562 * 6 5 4 26 26 H 1.08006 * 125.92904 * 0.02574 * 8 7 6 27 27 H 0.97005 * 119.99210 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0430 1.2050 0.0000 4 6 1.2947 2.3462 0.0287 5 6 1.9165 3.5971 0.0295 6 6 3.2944 3.6737 0.0007 7 6 4.0443 2.4935 -0.0285 8 6 5.4165 2.2285 -0.0614 9 7 5.5818 0.9176 -0.0797 10 6 4.3947 0.3091 -0.0600 11 6 4.1877 -1.0703 -0.0702 12 1 3.2018 -1.4697 0.1168 13 6 5.2563 -1.9357 -0.3225 14 7 5.1604 -3.2040 -0.0082 15 14 6.8209 -1.2838 -1.1078 16 1 7.7052 -0.7208 -0.0559 17 1 7.5234 -2.3909 -1.8048 18 1 6.4777 -0.2212 -2.0869 19 7 3.4062 1.2702 -0.0230 20 1 -0.3633 -1.0247 -0.0790 21 1 -0.3633 0.4439 0.9268 22 1 -0.3633 0.5807 -0.8478 23 1 0.2169 2.2817 0.0508 24 1 1.3227 4.4990 0.0527 25 1 3.7881 4.6342 0.0014 26 1 6.2045 2.9670 -0.0704 27 1 5.9021 -3.8043 -0.1830 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260651656.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:20 Heat of formation + Delta-G solvation = 22.650968 kcal Electronic energy + Delta-G solvation = -14446.814833 eV Core-core repulsion = 11977.359327 eV Total energy + Delta-G solvation = -2469.455505 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.02721 -40.21463 -37.24095 -35.37891 -33.72205 -31.44716 -29.97920 -28.46883 -26.49452 -23.93759 -22.92911 -22.41300 -19.88941 -18.28277 -18.09065 -17.27789 -17.15458 -16.54512 -15.90272 -15.67043 -15.34316 -14.78190 -14.50248 -13.84040 -13.36882 -13.19468 -12.89455 -12.64004 -12.54849 -12.28784 -12.04530 -11.81595 -11.28031 -10.93018 -10.37305 -9.84234 -8.92029 -8.40939 -6.27682 0.25791 0.56803 1.37258 1.45733 1.50295 1.62956 2.14954 2.38672 2.76908 2.81158 3.18387 3.95071 4.08434 4.28261 4.32175 4.35973 4.41950 4.50430 4.66265 4.72973 5.07038 5.17059 5.32490 5.58047 5.60579 5.77626 6.09587 6.26552 6.51377 6.59026 6.86246 7.50462 8.12281 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.031643 B = 0.012959 C = 0.009409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.671708 B = 2160.089370 C = 2975.184720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.340 6.340 3 C 0.291 3.709 4 C -0.264 4.264 5 C -0.119 4.119 6 C -0.110 4.110 7 C -0.077 4.077 8 C -0.016 4.016 9 N -0.579 5.579 10 C 0.319 3.681 11 C -0.453 4.453 12 H 0.083 0.917 13 C 0.068 3.932 14 N -0.835 5.835 15 Si 1.021 2.979 16 H -0.274 1.274 17 H -0.295 1.295 18 H -0.284 1.284 19 N -0.425 5.425 20 H 0.117 0.883 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.171 0.829 24 H 0.166 0.834 25 H 0.163 0.837 26 H 0.193 0.807 27 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.310 9.867 -0.890 12.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.252 6.252 3 C 0.143 3.857 4 C -0.286 4.286 5 C -0.140 4.140 6 C -0.129 4.129 7 C -0.181 4.181 8 C -0.168 4.168 9 N -0.302 5.302 10 C 0.081 3.919 11 C -0.492 4.492 12 H 0.101 0.899 13 C -0.150 4.150 14 N -0.463 5.463 15 Si 0.851 3.149 16 H -0.200 1.200 17 H -0.224 1.224 18 H -0.210 1.210 19 N -0.109 5.109 20 H 0.135 0.865 21 H 0.095 0.905 22 H 0.097 0.903 23 H 0.189 0.811 24 H 0.183 0.817 25 H 0.181 0.819 26 H 0.210 0.790 27 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.486 8.940 -0.857 11.692 hybrid contribution -0.283 0.108 -0.118 0.325 sum -7.769 9.048 -0.976 11.965 Atomic orbital electron populations 1.23479 0.74041 1.05831 1.03267 1.85914 1.24923 1.26326 1.88035 1.18917 0.81535 0.87027 0.98252 1.20782 1.00665 0.89972 1.17181 1.21188 0.93628 0.97321 1.01831 1.20782 0.93796 0.95199 1.03163 1.19688 0.93275 0.84935 1.20169 1.22875 0.93060 0.92542 1.08373 1.69549 1.22249 1.07910 1.30529 1.20211 0.80952 0.90682 1.00025 1.18057 0.98472 0.86453 1.46194 0.89943 1.26413 1.02289 0.94173 0.92160 1.69707 1.34994 1.05696 1.35871 0.84404 0.76791 0.75011 0.78704 1.20010 1.22432 1.21022 1.42693 1.03478 1.09212 1.55509 0.86491 0.90503 0.90325 0.81125 0.81670 0.81924 0.79005 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 9.80 113.37 1.11 1.81 15 2 O -0.34 -14.17 8.62 -85.23 -0.73 -14.90 15 3 C 0.29 12.48 7.65 83.56 0.64 13.12 15 4 C -0.26 -8.51 8.98 22.22 0.20 -8.31 15 5 C -0.12 -3.49 10.12 22.57 0.23 -3.26 15 6 C -0.11 -3.70 10.15 22.61 0.23 -3.47 15 7 C -0.08 -3.46 6.81 38.94 0.27 -3.20 15 8 C -0.02 -0.76 12.01 85.02 1.02 0.26 15 9 N -0.58 -32.00 7.02 -191.62 -1.35 -33.35 15 10 C 0.32 18.29 7.09 133.21 0.95 19.24 15 11 C -0.45 -27.36 9.47 22.95 0.22 -27.14 15 12 H 0.08 5.19 6.58 -2.91 -0.02 5.17 15 13 C 0.07 3.96 5.51 85.20 0.47 4.43 15 14 N -0.83 -47.56 13.94 21.81 0.30 -47.25 15 15 Si 1.02 51.99 25.65 68.60 1.76 53.75 15 16 H -0.27 -14.15 7.11 99.48 0.71 -13.45 15 17 H -0.30 -13.67 7.11 99.48 0.71 -12.96 15 18 H -0.28 -15.19 6.97 99.48 0.69 -14.50 15 19 N -0.43 -21.53 3.00 -455.73 -1.37 -22.89 15 20 H 0.12 2.52 8.14 -2.38 -0.02 2.50 15 21 H 0.08 1.58 7.81 -2.39 -0.02 1.56 15 22 H 0.08 1.60 7.42 -2.39 -0.02 1.59 15 23 H 0.17 3.99 6.16 -2.91 -0.02 3.97 15 24 H 0.17 3.27 8.06 -2.91 -0.02 3.24 15 25 H 0.16 4.14 8.06 -2.91 -0.02 4.11 15 26 H 0.19 7.16 8.06 -2.91 -0.02 7.14 15 27 H 0.30 15.24 8.30 -92.70 -0.77 14.47 15 Total: -1.00 -73.44 235.60 5.11 -68.32 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: 1.17 Total: 2.84 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 5.33 Total: -6.52 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: -2.41 Total: -103.49 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.73 Total: -14.90 kcal Atomic # 14 Polarization: 51.99 SS G_CDS: 1.76 Total: 53.75 kcal Total: -73.44 5.11 -68.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260651656.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.972 kcal (2) G-P(sol) polarization free energy of solvation -73.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds