Wall clock time and date at job start Mon Mar 30 2020 02:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46987 * 2 1 4 4 C 1.50695 * 109.47186 * 240.00200 * 2 1 3 5 5 H 1.08004 * 119.99983 * 239.99716 * 4 2 1 6 6 C 1.37869 * 120.00451 * 59.99960 * 4 2 1 7 7 N 1.31519 * 120.00127 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00311 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47276 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.47139 * 299.99672 * 8 6 4 11 11 H 1.48497 * 109.47392 * 59.99820 * 8 6 4 12 12 C 1.53001 * 109.47245 * 119.99786 * 2 1 3 13 13 H 1.09001 * 110.28097 * 52.41954 * 12 2 1 14 14 C 1.54167 * 110.32077 * 174.53847 * 12 2 1 15 15 C 1.53874 * 108.70078 * 146.81170 * 14 12 2 16 16 C 1.55046 * 106.62630 * 312.81742 * 15 14 12 17 17 S 1.82923 * 110.31887 * 290.20356 * 12 2 1 18 18 O 1.42095 * 109.35208 * 352.36687 * 17 12 2 19 19 O 1.42098 * 109.35284 * 125.57536 * 17 12 2 20 20 H 1.08997 * 109.46990 * 184.50238 * 1 2 3 21 21 H 1.08996 * 109.47131 * 304.50257 * 1 2 3 22 22 H 1.08999 * 109.46744 * 64.50259 * 1 2 3 23 23 H 0.96995 * 120.00363 * 180.02562 * 7 6 4 24 24 H 1.08995 * 109.64507 * 266.66834 * 14 12 2 25 25 H 1.09001 * 109.64457 * 27.09204 * 14 12 2 26 26 H 1.08992 * 110.02850 * 72.11683 * 15 14 12 27 27 H 1.09007 * 110.02143 * 193.48089 * 15 14 12 28 28 H 1.09002 * 110.78517 * 160.70840 * 16 15 14 29 29 H 1.09002 * 110.78810 * 283.97299 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.8261 -0.4206 -5.2204 10 1 3.8065 -1.1208 -4.0081 11 1 1.8260 -2.5202 -4.0077 12 6 2.0400 -0.7212 1.2493 13 1 1.5781 -1.7050 1.3327 14 6 3.5754 -0.8529 1.2021 15 6 4.1220 -0.7691 2.6381 16 6 3.4292 0.4464 3.3063 17 16 1.6932 0.2749 2.7438 18 8 1.1959 1.5482 2.3561 19 8 0.9712 -0.5148 3.6789 20 1 -0.3633 -1.0245 0.0807 21 1 -0.3633 0.5821 0.8469 22 1 -0.3633 0.4424 -0.9276 23 1 0.7082 1.1608 -3.4844 24 1 3.8475 -1.8120 0.7617 25 1 3.9944 -0.0432 0.6047 26 1 3.8816 -1.6819 3.1829 27 1 5.2017 -0.6199 2.6182 28 1 3.4926 0.3789 4.3923 29 1 3.8631 1.3817 2.9525 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260652466.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:25 Heat of formation + Delta-G solvation = -108.606543 kcal Electronic energy + Delta-G solvation = -13660.131701 eV Core-core repulsion = 11288.135643 eV Total energy + Delta-G solvation = -2371.996058 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.21962 -37.88878 -36.94928 -35.50714 -33.09134 -29.25226 -27.23802 -25.90526 -22.22100 -21.96030 -19.52042 -18.64922 -17.51219 -17.23799 -16.61332 -16.31221 -15.24623 -14.92994 -14.82442 -14.25484 -13.98310 -13.32569 -13.23604 -12.95646 -12.92413 -12.84092 -12.76285 -12.42020 -12.12386 -11.89805 -11.80475 -11.54731 -11.27381 -11.16470 -10.49680 -10.43155 -8.05709 -6.20945 -0.71845 1.45946 1.47241 1.54430 1.81666 2.45757 2.80795 3.17272 3.21855 3.62993 3.95493 3.99509 4.08282 4.31373 4.62020 4.75636 4.80019 4.91086 4.99928 5.14204 5.18492 5.25206 5.45709 5.61801 5.82091 6.05188 6.32282 6.89387 7.47655 8.99391 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.044646 B = 0.010383 C = 0.009186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.010099 B = 2696.124787 C = 3047.525998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.065 3.935 3 H 0.018 0.982 4 C -0.514 4.514 5 H 0.073 0.927 6 C 0.005 3.995 7 N -0.923 5.923 8 Si 0.958 3.042 9 H -0.292 1.292 10 H -0.265 1.265 11 H -0.272 1.272 12 C -0.521 4.521 13 H 0.133 0.867 14 C -0.102 4.102 15 C -0.116 4.116 16 C -0.561 4.561 17 S 2.350 3.650 18 O -0.985 6.985 19 O -0.987 6.987 20 H 0.037 0.963 21 H 0.019 0.981 22 H 0.067 0.933 23 H 0.260 0.740 24 H 0.098 0.902 25 H 0.077 0.923 26 H 0.100 0.900 27 H 0.125 0.875 28 H 0.160 0.840 29 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.574 -3.771 9.117 13.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.046 3.954 3 H 0.036 0.964 4 C -0.553 4.553 5 H 0.091 0.909 6 C -0.193 4.193 7 N -0.563 5.563 8 Si 0.784 3.216 9 H -0.218 1.218 10 H -0.190 1.190 11 H -0.197 1.197 12 C -0.633 4.633 13 H 0.151 0.849 14 C -0.141 4.141 15 C -0.154 4.154 16 C -0.695 4.695 17 S 2.542 3.458 18 O -0.982 6.982 19 O -0.984 6.984 20 H 0.056 0.944 21 H 0.038 0.962 22 H 0.086 0.914 23 H 0.069 0.931 24 H 0.116 0.884 25 H 0.096 0.904 26 H 0.119 0.881 27 H 0.143 0.857 28 H 0.178 0.822 29 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.586 -3.303 9.409 12.529 hybrid contribution 0.255 -0.325 -1.389 1.450 sum 7.841 -3.628 8.020 11.788 Atomic orbital electron populations 1.22027 0.99511 0.98942 1.01206 1.18341 0.91968 0.94640 0.90494 0.96429 1.21444 1.30960 1.12576 0.90368 0.90862 1.25848 0.95470 0.95731 1.02283 1.70049 1.37802 1.24450 1.24017 0.85609 0.79054 0.78502 0.78447 1.21834 1.18953 1.19710 1.30208 1.06278 1.12662 1.14162 0.84865 1.21987 0.88859 1.05650 0.97604 1.22386 1.03869 0.95779 0.93373 1.30432 1.18442 1.08644 1.11953 1.09971 0.81156 0.76119 0.78559 1.93516 1.80127 1.41349 1.83200 1.93490 1.71948 1.71236 1.61694 0.94352 0.96164 0.91391 0.93084 0.88367 0.90439 0.88141 0.85675 0.82179 0.83162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.15 8.81 71.98 0.63 -7.51 15 2 C 0.07 3.18 1.42 -11.54 -0.02 3.16 15 3 H 0.02 0.96 7.70 -2.38 -0.02 0.94 15 4 C -0.51 -26.41 7.89 25.60 0.20 -26.20 15 5 H 0.07 3.48 7.02 -2.91 -0.02 3.46 15 6 C 0.00 0.26 5.29 84.65 0.45 0.71 15 7 N -0.92 -53.56 11.29 21.45 0.24 -53.32 15 8 Si 0.96 42.05 29.54 68.60 2.03 44.07 15 9 H -0.29 -12.97 7.11 99.48 0.71 -12.26 15 10 H -0.26 -11.00 7.11 99.48 0.71 -10.29 15 11 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 12 C -0.52 -19.11 2.75 30.99 0.09 -19.02 15 13 H 0.13 4.65 8.14 -2.39 -0.02 4.63 15 14 C -0.10 -2.87 4.90 31.28 0.15 -2.72 15 15 C -0.12 -2.17 6.48 31.59 0.20 -1.97 15 16 C -0.56 -11.83 7.31 72.68 0.53 -11.30 15 17 S 2.35 81.33 5.50 -56.49 -0.31 81.02 15 18 O -0.98 -43.30 15.82 -127.49 -2.02 -45.31 15 19 O -0.99 -38.31 18.15 -127.49 -2.31 -40.62 15 20 H 0.04 1.81 8.14 -2.39 -0.02 1.79 15 21 H 0.02 0.97 6.61 -2.39 -0.02 0.96 15 22 H 0.07 3.85 5.96 -2.39 -0.01 3.84 15 23 H 0.26 14.45 8.31 -92.71 -0.77 13.68 15 24 H 0.10 2.57 7.84 -2.39 -0.02 2.55 15 25 H 0.08 2.38 7.78 -2.39 -0.02 2.36 15 26 H 0.10 1.54 8.14 -2.39 -0.02 1.52 15 27 H 0.13 1.63 8.14 -2.38 -0.02 1.61 15 28 H 0.16 2.43 8.14 -2.39 -0.02 2.41 15 29 H 0.15 2.82 8.14 -2.39 -0.02 2.80 15 Total: -1.00 -70.92 246.54 1.00 -69.92 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 1.13 Total: 9.10 kcal Atomic # 6 Polarization: -67.10 SS G_CDS: 2.24 Total: -64.85 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.24 Total: -53.32 kcal Atomic # 8 Polarization: -81.60 SS G_CDS: -4.33 Total: -85.93 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Atomic # 16 Polarization: 81.33 SS G_CDS: -0.31 Total: 81.02 kcal Total: -70.92 1.00 -69.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260652466.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.686 kcal (2) G-P(sol) polarization free energy of solvation -70.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds