Wall clock time and date at job start Mon Mar 30 2020 02:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46838 * 2 1 4 4 C 1.50699 * 109.47125 * 119.99752 * 2 1 3 5 5 H 1.08000 * 120.00445 * 120.00012 * 4 2 1 6 6 C 1.37878 * 120.00045 * 300.00085 * 4 2 1 7 7 N 1.31512 * 120.00247 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00193 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46977 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47360 * 120.00041 * 8 6 4 11 11 H 1.48495 * 109.47431 * 240.00094 * 8 6 4 12 12 C 1.52991 * 109.47320 * 239.99886 * 2 1 3 13 13 H 1.08998 * 110.36579 * 296.95015 * 12 2 1 14 14 C 1.54173 * 110.31847 * 59.11651 * 12 2 1 15 15 C 1.54375 * 108.77254 * 146.81870 * 14 12 2 16 16 C 1.55045 * 106.38333 * 312.87944 * 15 14 12 17 17 S 1.82913 * 110.32124 * 174.77987 * 12 2 1 18 18 O 1.42101 * 109.35584 * 125.57423 * 17 12 2 19 19 O 1.42102 * 109.47644 * 352.40389 * 17 12 2 20 20 H 1.09002 * 109.47139 * 305.59909 * 1 2 3 21 21 H 1.08995 * 109.47519 * 65.59634 * 1 2 3 22 22 H 1.08996 * 109.46910 * 185.60017 * 1 2 3 23 23 H 0.96994 * 120.00349 * 179.97438 * 7 6 4 24 24 H 1.08997 * 109.64221 * 266.66303 * 14 12 2 25 25 H 1.08993 * 109.64609 * 27.09327 * 14 12 2 26 26 H 1.09004 * 110.26045 * 193.60632 * 15 14 12 27 27 H 1.08999 * 110.03042 * 72.03706 * 15 14 12 28 28 H 1.09002 * 110.78826 * 284.03207 * 16 15 14 29 29 H 1.08995 * 110.79008 * 160.75621 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.1454 -2.2876 3.6039 10 1 3.1465 -0.1872 4.8166 11 1 1.1660 -1.5865 4.8161 12 6 2.0400 -0.7212 -1.2491 13 1 1.7298 -1.7661 -1.2371 14 6 1.5188 -0.0227 -2.5209 15 6 2.5861 -0.1478 -3.6292 16 6 3.9391 0.2406 -2.9793 17 16 3.8622 -0.6008 -1.3527 18 8 4.4145 -1.9048 -1.4704 19 8 4.3369 0.2804 -0.3440 20 1 -0.3633 0.5982 0.8356 21 1 -0.3634 0.4246 -0.9358 22 1 -0.3633 -1.0227 0.1003 23 1 0.7081 1.1609 3.4844 24 1 0.5945 -0.4990 -2.8478 25 1 1.3339 1.0306 -2.3108 26 1 2.3583 0.5311 -4.4510 27 1 2.6278 -1.1744 -3.9933 28 1 4.0117 1.3208 -2.8531 29 1 4.7742 -0.1354 -3.5703 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260652468.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:26 Heat of formation + Delta-G solvation = -109.149843 kcal Electronic energy + Delta-G solvation = -13727.251038 eV Core-core repulsion = 11355.231421 eV Total energy + Delta-G solvation = -2372.019617 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.20199 -37.79862 -36.80470 -35.52538 -33.04806 -29.03013 -27.40756 -25.95652 -22.70958 -21.35010 -19.46152 -18.45649 -17.65552 -17.39534 -16.62899 -16.22952 -15.17529 -15.11850 -14.71423 -14.14185 -13.83470 -13.34506 -13.11113 -12.94980 -12.84626 -12.83599 -12.80236 -12.42819 -12.14606 -12.10643 -11.82959 -11.41859 -11.21882 -11.00060 -10.60337 -10.43205 -8.14863 -6.26449 -0.64528 1.33612 1.36993 1.47259 1.95036 2.39640 2.93598 3.14359 3.26295 3.64759 3.95894 3.97635 4.09769 4.31288 4.63622 4.77250 4.82808 5.03930 5.09227 5.15635 5.17896 5.27861 5.33995 5.55896 5.88956 6.03261 6.26052 6.79799 7.41254 8.90636 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.038898 B = 0.012096 C = 0.010195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.650493 B = 2314.260690 C = 2745.657016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.066 3.934 3 H 0.019 0.981 4 C -0.544 4.544 5 H 0.039 0.961 6 C 0.022 3.978 7 N -0.907 5.907 8 Si 0.935 3.065 9 H -0.275 1.275 10 H -0.279 1.279 11 H -0.268 1.268 12 C -0.522 4.522 13 H 0.130 0.870 14 C -0.113 4.113 15 C -0.113 4.113 16 C -0.567 4.567 17 S 2.350 3.650 18 O -0.998 6.998 19 O -0.978 6.978 20 H 0.051 0.949 21 H 0.052 0.948 22 H 0.027 0.973 23 H 0.263 0.737 24 H 0.109 0.891 25 H 0.085 0.915 26 H 0.130 0.870 27 H 0.098 0.902 28 H 0.151 0.849 29 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.494 -0.095 -13.886 13.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.047 3.953 3 H 0.038 0.962 4 C -0.582 4.582 5 H 0.057 0.943 6 C -0.177 4.177 7 N -0.546 5.546 8 Si 0.761 3.239 9 H -0.200 1.200 10 H -0.205 1.205 11 H -0.193 1.193 12 C -0.635 4.635 13 H 0.148 0.852 14 C -0.152 4.152 15 C -0.152 4.152 16 C -0.700 4.700 17 S 2.542 3.458 18 O -0.995 6.995 19 O -0.975 6.975 20 H 0.070 0.930 21 H 0.071 0.929 22 H 0.046 0.954 23 H 0.072 0.928 24 H 0.127 0.873 25 H 0.103 0.897 26 H 0.148 0.852 27 H 0.116 0.884 28 H 0.169 0.831 29 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.189 -0.306 -13.095 13.152 hybrid contribution -0.098 -0.257 1.005 1.042 sum 1.090 -0.563 -12.090 12.152 Atomic orbital electron populations 1.21630 0.96350 0.99707 1.00260 1.18315 0.94665 0.94274 0.88069 0.96248 1.21503 1.31515 1.12240 0.92933 0.94278 1.25516 0.95116 0.95630 1.01475 1.69969 1.37201 1.23506 1.23969 0.85850 0.78660 0.78923 0.80471 1.19953 1.20498 1.19307 1.30156 1.20549 1.08787 1.03969 0.85182 1.22268 1.00944 1.02057 0.89887 1.22449 0.88443 1.05304 0.98984 1.30498 1.07706 1.13996 1.17803 1.09929 0.80689 0.75629 0.79585 1.93459 1.78082 1.39976 1.87994 1.93530 1.79718 1.66593 1.57642 0.92964 0.92912 0.95351 0.92791 0.87255 0.89654 0.85166 0.88382 0.83065 0.82621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.74 71.98 0.63 -4.77 15 2 C 0.07 3.20 1.39 -11.54 -0.02 3.18 15 3 H 0.02 1.03 7.90 -2.38 -0.02 1.01 15 4 C -0.54 -31.02 7.41 25.60 0.19 -30.83 15 5 H 0.04 2.26 7.64 -2.91 -0.02 2.24 15 6 C 0.02 1.29 5.30 84.66 0.45 1.74 15 7 N -0.91 -53.19 11.38 21.45 0.24 -52.95 15 8 Si 0.94 46.16 29.54 68.60 2.03 48.18 15 9 H -0.27 -13.58 7.11 99.48 0.71 -12.88 15 10 H -0.28 -13.61 7.11 99.48 0.71 -12.90 15 11 H -0.27 -12.45 7.11 99.48 0.71 -11.75 15 12 C -0.52 -19.17 2.72 30.99 0.08 -19.09 15 13 H 0.13 4.67 8.14 -2.39 -0.02 4.65 15 14 C -0.11 -2.75 4.70 31.46 0.15 -2.60 15 15 C -0.11 -1.97 6.52 31.76 0.21 -1.77 15 16 C -0.57 -12.40 7.29 72.68 0.53 -11.87 15 17 S 2.35 89.36 5.50 -56.49 -0.31 89.05 15 18 O -1.00 -43.29 18.15 -127.47 -2.31 -45.60 15 19 O -0.98 -47.85 16.51 -127.47 -2.10 -49.95 15 20 H 0.05 2.66 6.24 -2.39 -0.01 2.64 15 21 H 0.05 1.89 6.92 -2.39 -0.02 1.87 15 22 H 0.03 1.23 8.14 -2.39 -0.02 1.21 15 23 H 0.26 14.59 8.31 -92.71 -0.77 13.82 15 24 H 0.11 2.20 8.12 -2.39 -0.02 2.18 15 25 H 0.08 2.07 7.71 -2.39 -0.02 2.05 15 26 H 0.13 1.39 8.14 -2.39 -0.02 1.37 15 27 H 0.10 1.44 8.14 -2.39 -0.02 1.42 15 28 H 0.15 2.87 8.14 -2.39 -0.02 2.86 15 29 H 0.16 2.60 8.14 -2.39 -0.02 2.58 15 Total: -1.00 -75.77 248.17 0.89 -74.88 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: 1.12 Total: 2.38 kcal Atomic # 6 Polarization: -68.22 SS G_CDS: 2.22 Total: -66.00 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: 0.24 Total: -52.95 kcal Atomic # 8 Polarization: -91.14 SS G_CDS: -4.42 Total: -95.56 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Atomic # 16 Polarization: 89.36 SS G_CDS: -0.31 Total: 89.05 kcal Total: -75.77 0.89 -74.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260652468.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.268 kcal (2) G-P(sol) polarization free energy of solvation -75.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds