Wall clock time and date at job start Mon Mar 30 2020 02:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47642 * 2 1 4 4 C 1.50706 * 109.46939 * 240.00171 * 2 1 3 5 5 H 1.08008 * 119.99497 * 268.08582 * 4 2 1 6 6 C 1.37867 * 120.00306 * 88.08631 * 4 2 1 7 7 N 1.31515 * 120.00118 * 353.55427 * 6 4 2 8 8 Si 1.86804 * 120.00384 * 173.55158 * 6 4 2 9 9 H 1.48502 * 109.46698 * 59.99822 * 8 6 4 10 10 H 1.48505 * 109.47098 * 300.00208 * 8 6 4 11 11 H 1.48496 * 109.47520 * 180.02562 * 8 6 4 12 12 C 1.53004 * 109.47238 * 120.00317 * 2 1 3 13 13 H 1.08994 * 110.70287 * 68.32021 * 12 2 1 14 14 C 1.55049 * 110.78570 * 304.99538 * 12 2 1 15 15 C 1.53877 * 106.62253 * 199.29738 * 14 12 2 16 16 C 1.54168 * 108.70567 * 47.18286 * 15 14 12 17 17 S 1.82920 * 105.08406 * 332.09156 * 16 15 14 18 18 O 1.42099 * 109.35228 * 248.72434 * 17 16 15 19 19 O 1.42100 * 109.35544 * 115.52121 * 17 16 15 20 20 H 1.08995 * 109.46689 * 66.18180 * 1 2 3 21 21 H 1.08994 * 109.47361 * 186.18504 * 1 2 3 22 22 H 1.08998 * 109.46747 * 306.18424 * 1 2 3 23 23 H 0.97002 * 120.00001 * 354.48321 * 7 6 4 24 24 H 1.08999 * 110.02801 * 318.59072 * 14 12 2 25 25 H 1.09002 * 110.02406 * 80.00819 * 14 12 2 26 26 H 1.09000 * 109.64863 * 167.03429 * 15 14 12 27 27 H 1.09001 * 109.64802 * 287.33148 * 15 14 12 28 28 H 1.08998 * 110.32134 * 90.99081 * 16 15 14 29 29 H 1.09000 * 110.31945 * 213.09159 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.2418 -1.7694 -1.1950 6 6 2.2245 -0.0086 -2.4016 7 7 1.8512 1.2498 -2.4828 8 14 3.0152 -0.8451 -3.8728 9 1 2.1893 -2.0089 -4.2835 10 1 4.3770 -1.3096 -3.5054 11 1 3.1085 0.1183 -4.9990 12 6 2.0401 -0.7213 1.2492 13 1 1.8134 -1.7863 1.1988 14 6 1.4397 -0.0909 2.5323 15 6 2.3463 -0.5199 3.6992 16 6 3.8158 -0.2882 3.2947 17 16 3.8380 -0.4437 1.4722 18 8 4.5450 -1.6215 1.1087 19 8 4.1965 0.8054 0.8974 20 1 -0.3632 0.4150 -0.9401 21 1 -0.3634 -1.0216 0.1107 22 1 -0.3633 0.6067 0.8295 23 1 1.3691 1.6611 -1.7485 24 1 1.4315 0.9956 2.4457 25 1 0.4267 -0.4608 2.6910 26 1 2.1116 0.0734 4.5830 27 1 2.1884 -1.5763 3.9169 28 1 4.1379 0.7093 3.5934 29 1 4.4570 -1.0440 3.7484 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260652472.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:28 Heat of formation + Delta-G solvation = -118.457072 kcal Electronic energy + Delta-G solvation = -13763.475660 eV Core-core repulsion = 11391.052451 eV Total energy + Delta-G solvation = -2372.423209 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.40621 -37.80902 -36.89004 -35.82519 -33.04046 -29.13661 -27.24850 -25.87960 -22.93235 -21.47442 -19.64379 -18.91938 -17.89242 -17.22873 -16.55323 -15.74098 -15.70373 -15.05807 -14.83806 -14.62760 -13.66166 -13.44774 -13.21308 -13.05821 -13.01366 -12.90326 -12.68721 -12.55793 -12.33779 -12.00731 -11.76358 -11.50058 -11.35943 -10.83930 -10.62845 -10.36279 -8.64871 -6.38719 -0.73439 1.46011 1.54862 1.73052 1.89977 2.52244 2.88867 3.11294 3.19777 3.58213 3.87499 3.89182 3.97921 4.21412 4.53003 4.59772 4.73119 4.85134 4.94136 4.97278 5.03051 5.12525 5.21904 5.40946 5.59280 6.00858 6.20700 6.60979 7.42629 8.75460 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.037228 B = 0.012582 C = 0.010660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.941148 B = 2224.871626 C = 2626.104401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.038 3.962 3 H 0.022 0.978 4 C -0.631 4.631 5 H 0.047 0.953 6 C -0.024 4.024 7 N -0.927 5.927 8 Si 1.090 2.910 9 H -0.259 1.259 10 H -0.283 1.283 11 H -0.277 1.277 12 C -0.510 4.510 13 H 0.137 0.863 14 C -0.121 4.121 15 C -0.107 4.107 16 C -0.569 4.569 17 S 2.348 3.652 18 O -0.997 6.997 19 O -0.989 6.989 20 H 0.020 0.980 21 H 0.051 0.949 22 H 0.059 0.941 23 H 0.264 0.736 24 H 0.080 0.920 25 H 0.118 0.882 26 H 0.124 0.876 27 H 0.104 0.896 28 H 0.152 0.848 29 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.345 -3.692 14.849 15.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.018 3.982 3 H 0.040 0.960 4 C -0.669 4.669 5 H 0.066 0.934 6 C -0.224 4.224 7 N -0.563 5.563 8 Si 0.912 3.088 9 H -0.184 1.184 10 H -0.209 1.209 11 H -0.202 1.202 12 C -0.623 4.623 13 H 0.155 0.845 14 C -0.160 4.160 15 C -0.146 4.146 16 C -0.702 4.702 17 S 2.541 3.459 18 O -0.994 6.994 19 O -0.987 6.987 20 H 0.039 0.961 21 H 0.070 0.930 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.099 0.901 25 H 0.137 0.863 26 H 0.142 0.858 27 H 0.122 0.878 28 H 0.170 0.830 29 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.005 -3.377 12.634 13.077 hybrid contribution -0.924 -0.151 1.485 1.756 sum -0.920 -3.529 14.119 14.582 Atomic orbital electron populations 1.21734 0.96210 1.00501 0.99225 1.18572 0.94695 0.94882 0.90041 0.96026 1.22441 1.49292 0.96936 0.98192 0.93420 1.27018 0.95852 0.95752 1.03787 1.70854 1.37015 1.13142 1.35327 0.83327 0.76460 0.75517 0.73510 1.18368 1.20876 1.20201 1.30249 1.19843 1.09081 1.03136 0.84464 1.22508 1.02634 1.01534 0.89340 1.22041 0.87292 1.05700 0.99527 1.30369 1.07330 1.13272 1.19275 1.09935 0.80678 0.73984 0.81332 1.93443 1.72620 1.49688 1.83670 1.93497 1.83011 1.44560 1.77596 0.96111 0.92995 0.92254 0.92563 0.90141 0.86334 0.85760 0.87769 0.83003 0.82286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.94 8.53 71.98 0.61 -4.33 15 2 C 0.04 1.82 1.39 -11.54 -0.02 1.81 15 3 H 0.02 1.18 6.32 -2.39 -0.02 1.16 15 4 C -0.63 -36.06 8.01 25.60 0.21 -35.85 15 5 H 0.05 2.72 7.82 -2.91 -0.02 2.69 15 6 C -0.02 -1.42 5.45 84.65 0.46 -0.95 15 7 N -0.93 -58.52 13.55 21.44 0.29 -58.23 15 8 Si 1.09 53.52 29.91 68.60 2.05 55.58 15 9 H -0.26 -11.49 7.11 99.48 0.71 -10.78 15 10 H -0.28 -13.72 7.11 99.48 0.71 -13.01 15 11 H -0.28 -13.36 7.11 99.48 0.71 -12.65 15 12 C -0.51 -18.73 2.70 31.30 0.08 -18.64 15 13 H 0.14 4.73 8.14 -2.39 -0.02 4.71 15 14 C -0.12 -2.92 4.76 31.59 0.15 -2.77 15 15 C -0.11 -1.78 6.40 31.29 0.20 -1.58 15 16 C -0.57 -12.22 7.26 72.38 0.53 -11.69 15 17 S 2.35 92.12 5.55 -56.49 -0.31 91.81 15 18 O -1.00 -46.10 18.15 -127.49 -2.31 -48.41 15 19 O -0.99 -49.26 17.16 -127.49 -2.19 -51.45 15 20 H 0.02 0.95 7.78 -2.39 -0.02 0.93 15 21 H 0.05 1.99 8.14 -2.39 -0.02 1.97 15 22 H 0.06 2.01 7.29 -2.39 -0.02 1.99 15 23 H 0.26 16.48 6.44 -92.71 -0.60 15.89 15 24 H 0.08 1.99 8.08 -2.39 -0.02 1.97 15 25 H 0.12 2.30 7.87 -2.39 -0.02 2.29 15 26 H 0.12 1.28 8.14 -2.39 -0.02 1.26 15 27 H 0.10 1.32 8.14 -2.39 -0.02 1.30 15 28 H 0.15 2.72 8.14 -2.39 -0.02 2.70 15 29 H 0.16 2.62 8.14 -2.39 -0.02 2.60 15 Total: -1.00 -80.73 250.59 1.05 -79.68 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 1.30 Total: 5.03 kcal Atomic # 6 Polarization: -76.23 SS G_CDS: 2.23 Total: -74.01 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 0.29 Total: -58.23 kcal Atomic # 8 Polarization: -95.36 SS G_CDS: -4.50 Total: -99.86 kcal Atomic # 14 Polarization: 53.52 SS G_CDS: 2.05 Total: 55.58 kcal Atomic # 16 Polarization: 92.12 SS G_CDS: -0.31 Total: 91.81 kcal Total: -80.73 1.05 -79.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260652472.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.776 kcal (2) G-P(sol) polarization free energy of solvation -80.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds