Wall clock time and date at job start Mon Mar 30 2020 02:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47102 * 120.00237 * 2 1 3 5 5 C 1.50699 * 109.46866 * 295.00087 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00270 * 180.02562 * 5 4 2 8 8 N 1.31522 * 119.99834 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00496 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47141 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47494 * 119.99680 * 9 7 5 12 12 H 1.48505 * 109.47047 * 239.99860 * 9 7 5 13 13 C 1.52997 * 109.47350 * 239.99782 * 2 1 3 14 14 C 1.53049 * 113.15120 * 160.54434 * 13 2 1 15 15 S 1.81500 * 89.86371 * 211.87283 * 14 13 2 16 16 O 1.42110 * 112.71436 * 280.43122 * 15 14 13 17 17 O 1.42098 * 112.85902 * 136.68779 * 15 14 13 18 18 C 1.53043 * 113.14952 * 60.12002 * 13 2 1 19 19 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 21 21 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 22 22 H 1.08993 * 109.46955 * 55.00306 * 4 2 1 23 23 H 1.09000 * 109.47050 * 175.00134 * 4 2 1 24 24 H 0.96992 * 120.00032 * 180.02562 * 8 7 5 25 25 H 1.09002 * 112.50140 * 290.33301 * 13 2 1 26 26 H 1.09000 * 113.15066 * 327.11737 * 14 13 2 27 27 H 1.08999 * 113.14629 * 96.59712 * 14 13 2 28 28 H 1.08995 * 113.15114 * 263.40639 * 18 13 2 29 29 H 1.09004 * 113.15159 * 32.84856 * 18 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0569 2.4766 6 1 1.0806 0.9745 2.3756 7 6 1.9931 -0.4017 3.7283 8 7 2.6763 -1.5188 3.8512 9 14 1.4983 0.5625 5.2496 10 1 0.7409 1.7737 4.8435 11 1 0.6449 -0.2872 6.1185 12 1 2.7162 0.9681 5.9964 13 6 2.0400 -0.7213 -1.2492 14 6 3.4916 -0.3778 -1.5918 15 16 3.1203 -0.5876 -3.3560 16 8 3.0976 -1.9518 -3.7535 17 8 3.6914 0.4313 -4.1652 18 6 1.5796 -0.0651 -2.5529 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.6054 -1.7198 1.2951 23 1 3.1263 -0.7995 1.2056 24 1 2.9235 -1.8417 4.7317 25 1 1.8492 -1.7940 -1.2186 26 1 3.7633 0.6447 -1.3297 27 1 4.2056 -1.1095 -1.2137 28 1 0.6934 -0.5349 -2.9794 29 1 1.4816 1.0178 -2.4764 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260654216.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:14 Heat of formation + Delta-G solvation = -94.091124 kcal Electronic energy + Delta-G solvation = -13053.673649 eV Core-core repulsion = 10682.307026 eV Total energy + Delta-G solvation = -2371.366622 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.11098 -38.19517 -37.01609 -35.30714 -33.14157 -28.98978 -27.35866 -25.69890 -23.24566 -20.67287 -19.68504 -18.45881 -17.29050 -17.09506 -16.93955 -16.53900 -15.80360 -14.88653 -14.51215 -14.36629 -13.84795 -13.55279 -13.24711 -13.21198 -13.03600 -12.83643 -12.75813 -12.32309 -12.23284 -12.13864 -11.63329 -11.34533 -11.11471 -10.98003 -10.70946 -10.51545 -8.16560 -6.24975 -0.67817 1.17631 1.39594 1.41038 1.52757 2.42399 2.85077 3.17612 3.18530 3.45499 3.92631 4.05161 4.43729 4.49072 4.53198 4.74228 4.79144 4.97032 5.04394 5.17594 5.32510 5.44984 5.53337 5.60536 5.86579 5.92610 6.31455 6.92828 7.43532 8.95444 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.061207 B = 0.006616 C = 0.006408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.352491 B = 4231.121240 C = 4368.610850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.057 4.057 3 H 0.067 0.933 4 C 0.026 3.974 5 C -0.527 4.527 6 H 0.062 0.938 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.957 3.043 10 H -0.261 1.261 11 H -0.282 1.282 12 H -0.282 1.282 13 C -0.077 4.077 14 C -0.593 4.593 15 S 2.442 3.558 16 O -0.952 6.952 17 O -0.961 6.961 18 C -0.570 4.570 19 H 0.042 0.958 20 H 0.042 0.958 21 H 0.074 0.926 22 H -0.011 1.011 23 H -0.006 1.006 24 H 0.261 0.739 25 H 0.103 0.897 26 H 0.150 0.850 27 H 0.119 0.881 28 H 0.145 0.855 29 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.124 3.772 -12.444 13.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.077 4.077 3 H 0.086 0.914 4 C -0.011 4.011 5 C -0.565 4.565 6 H 0.081 0.919 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.782 3.218 10 H -0.185 1.185 11 H -0.208 1.208 12 H -0.208 1.208 13 C -0.098 4.098 14 C -0.722 4.722 15 S 2.627 3.373 16 O -0.950 6.950 17 O -0.958 6.958 18 C -0.700 4.700 19 H 0.061 0.939 20 H 0.062 0.938 21 H 0.092 0.908 22 H 0.008 0.992 23 H 0.012 0.988 24 H 0.069 0.931 25 H 0.121 0.879 26 H 0.168 0.832 27 H 0.138 0.862 28 H 0.164 0.836 29 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.537 3.362 -13.438 13.937 hybrid contribution -0.363 0.237 2.324 2.364 sum -1.900 3.599 -11.114 11.836 Atomic orbital electron populations 1.21713 0.94777 1.01159 1.01377 1.20898 0.96150 0.98542 0.92105 0.91432 1.19095 0.94797 0.94597 0.92619 1.21731 1.34093 1.08562 0.92153 0.91936 1.25912 0.95398 0.96055 1.02578 1.70103 1.40518 1.22987 1.24106 0.85516 0.77983 0.78973 0.79284 1.18457 1.20816 1.20801 1.21579 0.92029 1.00976 0.95198 1.31082 1.04204 1.11650 1.25290 1.07427 0.80160 0.73495 0.76209 1.93643 1.85509 1.33770 1.82043 1.93567 1.75601 1.58827 1.67807 1.30855 1.20913 1.12249 1.06029 0.93873 0.93841 0.90760 0.99224 0.98765 0.93069 0.87871 0.83220 0.86249 0.83650 0.82146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.34 8.80 71.98 0.63 -3.71 15 2 C -0.06 -2.04 2.05 -10.79 -0.02 -2.07 15 3 H 0.07 2.36 7.99 -2.39 -0.02 2.34 15 4 C 0.03 1.29 4.43 29.85 0.13 1.42 15 5 C -0.53 -28.62 8.41 25.60 0.22 -28.41 15 6 H 0.06 3.24 7.06 -2.91 -0.02 3.22 15 7 C 0.00 -0.13 5.46 84.65 0.46 0.33 15 8 N -0.94 -56.26 13.29 21.45 0.28 -55.98 15 9 Si 0.96 43.59 29.54 68.60 2.03 45.61 15 10 H -0.26 -11.23 7.11 99.48 0.71 -10.53 15 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 12 H -0.28 -12.65 7.11 99.48 0.71 -11.94 15 13 C -0.08 -2.13 2.81 -10.76 -0.03 -2.16 15 14 C -0.59 -14.33 7.33 72.00 0.53 -13.80 15 15 S 2.44 50.17 7.55 -56.49 -0.43 49.74 15 16 O -0.95 -25.97 18.18 -127.87 -2.32 -28.29 15 17 O -0.96 -24.79 18.18 -127.87 -2.32 -27.12 15 18 C -0.57 -10.47 6.50 72.00 0.47 -10.00 15 19 H 0.04 1.41 8.14 -2.38 -0.02 1.39 15 20 H 0.04 1.58 6.95 -2.39 -0.02 1.56 15 21 H 0.07 1.84 7.43 -2.39 -0.02 1.82 15 22 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 15 23 H -0.01 -0.32 8.00 -2.39 -0.02 -0.34 15 24 H 0.26 14.79 8.31 -92.71 -0.77 14.02 15 25 H 0.10 2.93 8.14 -2.39 -0.02 2.91 15 26 H 0.15 3.34 8.01 -2.39 -0.02 3.32 15 27 H 0.12 2.95 8.14 -2.39 -0.02 2.93 15 28 H 0.15 2.01 8.14 -2.39 -0.02 1.99 15 29 H 0.16 2.42 8.12 -2.38 -0.02 2.40 15 Total: -1.00 -72.62 256.41 0.74 -71.88 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: 1.12 Total: 2.55 kcal Atomic # 6 Polarization: -60.78 SS G_CDS: 2.39 Total: -58.40 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.28 Total: -55.98 kcal Atomic # 8 Polarization: -50.76 SS G_CDS: -4.65 Total: -55.41 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 50.17 SS G_CDS: -0.43 Total: 49.74 kcal Total: -72.62 0.74 -71.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260654216.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.213 kcal (2) G-P(sol) polarization free energy of solvation -72.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds