Wall clock time and date at job start Mon Mar 30 2020 02:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47196 * 2 1 4 4 H 1.08996 * 109.47118 * 306.05992 * 3 2 1 5 5 C 1.50696 * 109.47316 * 186.05058 * 3 2 1 6 6 H 1.07998 * 120.00655 * 244.95790 * 5 3 2 7 7 C 1.37881 * 119.99640 * 64.95607 * 5 3 2 8 8 N 1.31511 * 119.99832 * 193.13079 * 7 5 3 9 9 Si 1.86807 * 119.99892 * 13.13230 * 7 5 3 10 10 H 1.48498 * 109.47101 * 93.55489 * 9 7 5 11 11 H 1.48505 * 109.46951 * 213.54953 * 9 7 5 12 12 H 1.48497 * 109.47168 * 333.55199 * 9 7 5 13 13 C 1.53006 * 109.46755 * 66.05248 * 3 2 1 14 14 C 1.53042 * 113.15424 * 274.96679 * 13 3 2 15 15 S 1.81424 * 89.88958 * 211.85397 * 14 13 3 16 16 O 1.42093 * 112.75365 * 280.47455 * 15 14 13 17 17 O 1.42101 * 112.74989 * 136.73235 * 15 14 13 18 18 C 1.53048 * 113.14877 * 174.59457 * 13 3 2 19 19 H 1.09002 * 109.47280 * 53.51451 * 1 2 3 20 20 H 1.08998 * 109.47430 * 173.51900 * 1 2 3 21 21 H 1.09008 * 109.47058 * 293.52169 * 1 2 3 22 22 H 1.08994 * 109.46978 * 240.00522 * 2 1 3 23 23 H 1.08997 * 109.47202 * 120.00122 * 2 1 3 24 24 H 0.97001 * 119.99588 * 180.02562 * 8 7 5 25 25 H 1.09005 * 112.49583 * 44.81400 * 13 3 2 26 26 H 1.08999 * 113.14776 * 327.12083 * 14 13 3 27 27 H 1.08999 * 113.14627 * 96.59597 * 14 13 3 28 28 H 1.09002 * 113.14699 * 263.41055 * 18 13 3 29 29 H 1.09000 * 113.14546 * 32.88782 * 18 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5908 1.9867 -0.8307 5 6 3.5395 1.4452 -0.1498 6 1 4.1618 1.8120 0.6531 7 6 4.1171 0.9793 -1.3119 8 7 5.4091 0.7376 -1.3530 9 14 3.0642 0.6914 -2.8278 10 1 3.0883 1.9039 -3.6848 11 1 3.6003 -0.4646 -3.5906 12 1 1.6671 0.4059 -2.4133 13 6 1.6579 2.1185 1.3184 14 6 0.2459 2.7087 1.3050 15 16 0.7887 4.0238 2.4308 16 8 0.8563 3.5956 3.7840 17 8 0.2939 5.3033 2.0603 18 6 2.2409 3.5261 1.4639 19 1 -0.3634 0.6111 -0.8263 20 1 -0.3634 -1.0211 -0.1160 21 1 -0.3633 0.4102 0.9423 22 1 1.8933 -0.5137 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 5.8154 0.4102 -2.1707 25 1 1.8498 1.4837 2.1835 26 1 -0.0540 3.0800 0.3251 27 1 -0.4992 2.0470 1.7467 28 1 3.1668 3.5491 2.0387 29 1 2.3256 4.0550 0.5146 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260657771.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:13 Heat of formation + Delta-G solvation = -57.994196 kcal Electronic energy + Delta-G solvation = -13485.033102 eV Core-core repulsion = 11115.231760 eV Total energy + Delta-G solvation = -2369.801342 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.77190 -36.91937 -35.73996 -33.27264 -31.87298 -28.12776 -25.99855 -23.30655 -21.60997 -19.33599 -18.48634 -16.98013 -16.11458 -15.84210 -15.69612 -14.57080 -14.51564 -13.63955 -12.96303 -12.74856 -12.41524 -12.08295 -11.96397 -11.92209 -11.81665 -11.32808 -11.24468 -10.98037 -10.72563 -10.05242 -9.90650 -9.89171 -9.76974 -9.18214 -9.04538 -8.48046 -6.15029 -4.11022 0.52466 2.32752 3.23329 3.33916 3.36013 4.01029 4.34867 4.37349 4.83666 5.14357 5.29793 5.36664 5.63532 5.80218 5.86444 5.94996 6.08474 6.24539 6.35172 6.44838 6.59038 6.78926 6.92523 7.14819 7.42063 7.70820 8.44186 8.92094 9.49607 10.97840 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.039976 B = 0.010035 C = 0.009151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.243569 B = 2789.563205 C = 3058.909326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.124 4.124 3 C 0.043 3.957 4 H 0.030 0.970 5 C -0.517 4.517 6 H 0.076 0.924 7 C 0.074 3.926 8 N -0.894 5.894 9 Si 0.860 3.140 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.248 1.248 13 C -0.044 4.044 14 C -0.593 4.593 15 S 2.372 3.628 16 O -0.931 6.931 17 O -0.947 6.947 18 C -0.557 4.557 19 H 0.045 0.955 20 H 0.037 0.963 21 H 0.052 0.948 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.263 0.737 25 H 0.102 0.898 26 H 0.138 0.862 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.692 2.641 3.758 10.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.161 4.161 3 C 0.022 3.978 4 H 0.048 0.952 5 C -0.555 4.555 6 H 0.094 0.906 7 C -0.128 4.128 8 N -0.532 5.532 9 Si 0.687 3.313 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.172 1.172 13 C -0.065 4.065 14 C -0.722 4.722 15 S 2.559 3.441 16 O -0.928 6.928 17 O -0.944 6.944 18 C -0.688 4.688 19 H 0.064 0.936 20 H 0.056 0.944 21 H 0.071 0.929 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.120 0.880 26 H 0.157 0.843 27 H 0.136 0.864 28 H 0.138 0.862 29 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.944 3.374 4.553 11.445 hybrid contribution 0.025 -0.990 -1.797 2.052 sum -9.919 2.384 2.756 10.567 Atomic orbital electron populations 1.22018 0.98450 0.99890 1.00991 1.22008 0.92816 0.99821 1.01500 1.18974 0.97085 0.91312 0.90390 0.95190 1.20953 0.89077 1.42695 1.02743 0.90636 1.24970 0.94696 0.94376 0.98780 1.69957 1.11015 1.44500 1.27716 0.87256 0.82482 0.77925 0.83616 1.20809 1.21522 1.17223 1.21438 0.87668 0.93890 1.03501 1.31179 1.06763 1.17912 1.16392 1.09384 0.82048 0.76078 0.76627 1.93658 1.84878 1.83470 1.30785 1.93576 1.77390 1.38266 1.85137 1.30746 1.17584 1.06256 1.14236 0.93569 0.94423 0.92936 0.92504 0.92646 0.92697 0.88020 0.84332 0.86432 0.86220 0.83967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.07 37.16 0.34 -2.16 15 2 C -0.12 -2.43 4.61 -26.73 -0.12 -2.56 15 3 C 0.04 0.89 1.20 -91.77 -0.11 0.78 15 4 H 0.03 0.63 6.58 -51.93 -0.34 0.28 15 5 C -0.52 -13.26 8.44 -34.44 -0.29 -13.55 15 6 H 0.08 2.09 7.67 -52.49 -0.40 1.69 15 7 C 0.07 2.01 5.36 -17.82 -0.10 1.91 15 8 N -0.89 -26.26 13.96 55.43 0.77 -25.49 15 9 Si 0.86 20.17 25.74 -169.99 -4.38 15.79 15 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 15 12 H -0.25 -5.37 5.38 56.52 0.30 -5.06 15 13 C -0.04 -0.74 2.59 -90.57 -0.23 -0.97 15 14 C -0.59 -7.72 6.04 37.18 0.22 -7.50 15 15 S 2.37 31.44 7.55 -107.50 -0.81 30.63 15 16 O -0.93 -14.85 18.18 -57.30 -1.04 -15.89 15 17 O -0.95 -15.05 18.18 -57.30 -1.04 -16.09 15 18 C -0.56 -8.42 6.54 37.18 0.24 -8.18 15 19 H 0.05 0.73 8.14 -51.93 -0.42 0.30 15 20 H 0.04 0.55 8.14 -51.93 -0.42 0.13 15 21 H 0.05 0.73 5.54 -51.92 -0.29 0.44 15 22 H 0.06 1.21 4.82 -51.93 -0.25 0.96 15 23 H 0.05 1.07 8.13 -51.93 -0.42 0.65 15 24 H 0.26 7.31 8.31 -40.82 -0.34 6.97 15 25 H 0.10 1.65 8.11 -51.93 -0.42 1.23 15 26 H 0.14 1.69 7.94 -51.93 -0.41 1.28 15 27 H 0.12 1.29 6.68 -51.93 -0.35 0.94 15 28 H 0.12 1.76 8.14 -51.93 -0.42 1.34 15 29 H 0.14 2.15 8.12 -51.93 -0.42 1.73 15 LS Contribution 243.36 15.07 3.67 3.67 Total: -1.00 -32.78 243.36 -6.69 -39.46 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -3.81 Total: 0.15 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: -0.05 Total: -32.22 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: 0.77 Total: -25.49 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -2.08 Total: -31.98 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.38 Total: 15.79 kcal Atomic # 16 Polarization: 31.44 SS G_CDS: -0.81 Total: 30.63 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -32.78 -6.69 -39.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260657771.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.533 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds