Wall clock time and date at job start Mon Mar 30 2020 02:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47196 * 2 1 4 4 H 1.08996 * 109.47118 * 306.05992 * 3 2 1 5 5 C 1.50696 * 109.47316 * 186.05058 * 3 2 1 6 6 H 1.07998 * 120.00655 * 244.95790 * 5 3 2 7 7 C 1.37881 * 119.99640 * 64.95607 * 5 3 2 8 8 N 1.31511 * 119.99832 * 193.13079 * 7 5 3 9 9 Si 1.86807 * 119.99892 * 13.13230 * 7 5 3 10 10 H 1.48498 * 109.47101 * 93.55489 * 9 7 5 11 11 H 1.48505 * 109.46951 * 213.54953 * 9 7 5 12 12 H 1.48497 * 109.47168 * 333.55199 * 9 7 5 13 13 C 1.53006 * 109.46755 * 66.05248 * 3 2 1 14 14 C 1.53042 * 113.15424 * 274.96679 * 13 3 2 15 15 S 1.81424 * 89.88958 * 211.85397 * 14 13 3 16 16 O 1.42093 * 112.75365 * 280.47455 * 15 14 13 17 17 O 1.42101 * 112.74989 * 136.73235 * 15 14 13 18 18 C 1.53048 * 113.14877 * 174.59457 * 13 3 2 19 19 H 1.09002 * 109.47280 * 53.51451 * 1 2 3 20 20 H 1.08998 * 109.47430 * 173.51900 * 1 2 3 21 21 H 1.09008 * 109.47058 * 293.52169 * 1 2 3 22 22 H 1.08994 * 109.46978 * 240.00522 * 2 1 3 23 23 H 1.08997 * 109.47202 * 120.00122 * 2 1 3 24 24 H 0.97001 * 119.99588 * 180.02562 * 8 7 5 25 25 H 1.09005 * 112.49583 * 44.81400 * 13 3 2 26 26 H 1.08999 * 113.14776 * 327.12083 * 14 13 3 27 27 H 1.08999 * 113.14627 * 96.59597 * 14 13 3 28 28 H 1.09002 * 113.14699 * 263.41055 * 18 13 3 29 29 H 1.09000 * 113.14546 * 32.88782 * 18 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5908 1.9867 -0.8307 5 6 3.5395 1.4452 -0.1498 6 1 4.1618 1.8120 0.6531 7 6 4.1171 0.9793 -1.3119 8 7 5.4091 0.7376 -1.3530 9 14 3.0642 0.6914 -2.8278 10 1 3.0883 1.9039 -3.6848 11 1 3.6003 -0.4646 -3.5906 12 1 1.6671 0.4059 -2.4133 13 6 1.6579 2.1185 1.3184 14 6 0.2459 2.7087 1.3050 15 16 0.7887 4.0238 2.4308 16 8 0.8563 3.5956 3.7840 17 8 0.2939 5.3033 2.0603 18 6 2.2409 3.5261 1.4639 19 1 -0.3634 0.6111 -0.8263 20 1 -0.3634 -1.0211 -0.1160 21 1 -0.3633 0.4102 0.9423 22 1 1.8933 -0.5137 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 5.8154 0.4102 -2.1707 25 1 1.8498 1.4837 2.1835 26 1 -0.0540 3.0800 0.3251 27 1 -0.4992 2.0470 1.7467 28 1 3.1668 3.5491 2.0387 29 1 2.3256 4.0550 0.5146 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260657771.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:13 Heat of formation + Delta-G solvation = -82.897443 kcal Electronic energy + Delta-G solvation = -13486.112988 eV Core-core repulsion = 11115.231760 eV Total energy + Delta-G solvation = -2370.881228 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.14972 -38.15883 -36.97592 -34.92873 -33.60681 -29.74576 -27.16560 -25.06902 -22.97958 -20.82719 -19.63439 -18.86515 -17.35499 -17.10739 -16.90975 -16.28111 -15.87187 -15.10375 -14.74675 -14.18916 -13.69940 -13.53483 -13.31178 -13.19732 -13.16664 -12.80074 -12.71750 -12.52514 -12.08951 -11.74248 -11.52393 -11.37230 -11.00980 -10.89180 -10.68428 -10.44814 -8.24017 -6.22165 -0.61786 1.21887 1.36940 1.42112 1.50612 2.40680 2.89634 3.12181 3.23755 3.61683 4.05322 4.15585 4.46326 4.55278 4.58756 4.70350 4.74835 4.96260 5.07040 5.16883 5.28803 5.35855 5.48819 5.59347 5.74809 5.90858 6.40003 6.85530 7.41563 8.92570 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.039976 B = 0.010035 C = 0.009151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.243569 B = 2789.563205 C = 3058.909326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C 0.038 3.962 4 H 0.037 0.963 5 C -0.509 4.509 6 H 0.038 0.962 7 C 0.011 3.989 8 N -0.951 5.951 9 Si 0.919 3.081 10 H -0.282 1.282 11 H -0.298 1.298 12 H -0.214 1.214 13 C -0.060 4.060 14 C -0.573 4.573 15 S 2.432 3.568 16 O -0.952 6.952 17 O -0.965 6.965 18 C -0.579 4.579 19 H 0.053 0.947 20 H 0.051 0.949 21 H 0.076 0.924 22 H 0.036 0.964 23 H 0.049 0.951 24 H 0.261 0.739 25 H 0.103 0.897 26 H 0.157 0.843 27 H 0.150 0.850 28 H 0.111 0.889 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.888 2.721 3.716 13.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C 0.018 3.982 4 H 0.055 0.945 5 C -0.547 4.547 6 H 0.056 0.944 7 C -0.186 4.186 8 N -0.592 5.592 9 Si 0.744 3.256 10 H -0.208 1.208 11 H -0.225 1.225 12 H -0.136 1.136 13 C -0.081 4.081 14 C -0.704 4.704 15 S 2.618 3.382 16 O -0.949 6.949 17 O -0.962 6.962 18 C -0.708 4.708 19 H 0.072 0.928 20 H 0.071 0.929 21 H 0.095 0.905 22 H 0.055 0.945 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.122 0.878 26 H 0.175 0.825 27 H 0.168 0.832 28 H 0.130 0.870 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.154 3.466 4.526 14.336 hybrid contribution 1.088 -0.993 -1.687 2.239 sum -12.066 2.473 2.839 12.640 Atomic orbital electron populations 1.21978 0.94868 1.01393 1.02687 1.21946 0.96041 0.98253 1.00333 1.18973 0.93432 0.92922 0.92903 0.94453 1.21355 0.91988 1.40289 1.01097 0.94369 1.25831 0.95696 0.94841 1.02188 1.70118 1.13300 1.47323 1.28455 0.86307 0.82560 0.77265 0.79475 1.20814 1.22466 1.13582 1.21410 0.90882 0.94316 1.01488 1.31019 1.05025 1.17163 1.17207 1.07720 0.80003 0.75196 0.75303 1.93626 1.84949 1.83813 1.32529 1.93551 1.77329 1.39910 1.85375 1.30922 1.18958 1.05972 1.14932 0.92785 0.92944 0.90540 0.94529 0.93245 0.93046 0.87846 0.82511 0.83230 0.86994 0.84232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 9.07 71.98 0.65 -3.49 15 2 C -0.13 -4.72 4.61 30.60 0.14 -4.58 15 3 C 0.04 1.51 1.20 -11.54 -0.01 1.50 15 4 H 0.04 1.44 6.58 -2.39 -0.02 1.43 15 5 C -0.51 -26.59 8.44 25.60 0.22 -26.37 15 6 H 0.04 2.21 7.67 -2.91 -0.02 2.19 15 7 C 0.01 0.61 5.36 84.66 0.45 1.06 15 8 N -0.95 -58.14 13.96 21.45 0.30 -57.84 15 9 Si 0.92 41.54 25.74 68.60 1.77 43.30 15 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 11 H -0.30 -13.81 7.11 99.48 0.71 -13.10 15 12 H -0.21 -8.38 5.38 99.48 0.54 -7.85 15 13 C -0.06 -1.88 2.59 -10.76 -0.03 -1.91 15 14 C -0.57 -12.43 6.04 72.00 0.43 -12.00 15 15 S 2.43 58.01 7.55 -56.49 -0.43 57.58 15 16 O -0.95 -28.05 18.18 -127.88 -2.32 -30.37 15 17 O -0.96 -28.00 18.18 -127.88 -2.32 -30.32 15 18 C -0.58 -16.98 6.54 72.00 0.47 -16.51 15 19 H 0.05 1.40 8.14 -2.39 -0.02 1.38 15 20 H 0.05 1.29 8.14 -2.39 -0.02 1.27 15 21 H 0.08 1.70 5.54 -2.38 -0.01 1.69 15 22 H 0.04 1.47 4.82 -2.39 -0.01 1.46 15 23 H 0.05 1.84 8.13 -2.39 -0.02 1.82 15 24 H 0.26 15.12 8.31 -92.71 -0.77 14.35 15 25 H 0.10 3.18 8.11 -2.38 -0.02 3.16 15 26 H 0.16 2.98 7.94 -2.39 -0.02 2.97 15 27 H 0.15 2.37 6.68 -2.39 -0.02 2.36 15 28 H 0.11 3.38 8.14 -2.39 -0.02 3.36 15 29 H 0.14 4.13 8.12 -2.39 -0.02 4.11 15 Total: -1.00 -71.55 243.36 0.28 -71.27 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 0.96 Total: 8.68 kcal Atomic # 6 Polarization: -64.63 SS G_CDS: 2.33 Total: -62.31 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: 0.30 Total: -57.84 kcal Atomic # 8 Polarization: -56.04 SS G_CDS: -4.65 Total: -60.69 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 1.77 Total: 43.30 kcal Atomic # 16 Polarization: 58.01 SS G_CDS: -0.43 Total: 57.58 kcal Total: -71.55 0.28 -71.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260657771.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.625 kcal (2) G-P(sol) polarization free energy of solvation -71.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds