Wall clock time and date at job start Mon Mar 30 2020 02:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46646 * 2 1 4 4 C 1.50699 * 109.47622 * 239.99983 * 2 1 3 5 5 H 1.07992 * 120.00116 * 240.00376 * 4 2 1 6 6 C 1.37877 * 119.99885 * 59.99503 * 4 2 1 7 7 N 1.31521 * 120.00099 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00035 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47441 * 90.00163 * 8 6 4 10 10 H 1.48509 * 109.47237 * 209.99863 * 8 6 4 11 11 H 1.48503 * 109.47211 * 329.99763 * 8 6 4 12 12 C 1.52998 * 109.47251 * 119.99406 * 2 1 3 13 13 H 1.09003 * 109.53328 * 60.36864 * 12 2 1 14 14 C 1.53880 * 109.65164 * 300.00563 * 12 2 1 15 15 C 1.55047 * 106.62283 * 192.96625 * 14 12 2 16 16 S 1.83285 * 102.56779 * 42.43189 * 15 14 12 17 17 O 1.42102 * 109.35201 * 90.18665 * 16 15 14 18 18 O 1.42107 * 109.35347 * 223.38442 * 16 15 14 19 19 C 1.54171 * 109.64773 * 180.72674 * 12 2 1 20 20 H 1.08998 * 109.47006 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47494 * 299.99904 * 1 2 3 22 22 H 1.08995 * 109.47595 * 60.00246 * 1 2 3 23 23 H 0.97003 * 119.99931 * 180.02562 * 7 6 4 24 24 H 1.09000 * 110.02434 * 73.67028 * 14 12 2 25 25 H 1.08998 * 110.01939 * 312.25739 * 14 12 2 26 26 H 1.08999 * 110.78520 * 160.70277 * 15 14 12 27 27 H 1.09000 * 110.78712 * 284.15870 * 15 14 12 28 28 H 1.09002 * 110.31354 * 28.85871 * 19 12 2 29 29 H 1.09003 * 110.40260 * 266.71164 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3215 -1.1203 -4.0078 9 1 1.3430 -2.1617 -4.4118 10 1 2.4866 -0.1413 -5.1123 11 1 3.6296 -1.7581 -3.7121 12 6 2.0400 -0.7211 1.2493 13 1 1.6826 -1.7509 1.2471 14 6 1.5293 0.0011 2.5084 15 6 2.3383 -0.5655 3.7036 16 16 4.0418 -0.6418 3.0317 17 8 4.7090 0.5839 3.2995 18 8 4.6418 -1.8737 3.4083 19 6 3.5816 -0.7075 1.2626 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8899 23 1 0.7088 1.1613 -3.4845 24 1 0.4669 -0.1989 2.6484 25 1 1.6989 1.0740 2.4179 26 1 2.2894 0.1092 4.5583 27 1 1.9839 -1.5602 3.9738 28 1 3.9568 0.1729 0.7409 29 1 3.9736 -1.6148 0.8029 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260703035.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:31 Heat of formation + Delta-G solvation = -110.952316 kcal Electronic energy + Delta-G solvation = -13398.846005 eV Core-core repulsion = 11026.748227 eV Total energy + Delta-G solvation = -2372.097778 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.65474 -37.96819 -36.96080 -34.99520 -32.14050 -30.26813 -27.17031 -25.49962 -23.27528 -20.77587 -19.71279 -18.37889 -17.49449 -17.26768 -16.55120 -16.49743 -15.22331 -14.98502 -14.86265 -14.19216 -13.72744 -13.35351 -13.16283 -13.05129 -12.91225 -12.85593 -12.70880 -12.40201 -12.33639 -11.97668 -11.80029 -11.52061 -11.14982 -10.74267 -10.66956 -10.39078 -8.05952 -6.17445 -0.73874 1.40796 1.43778 1.51244 1.74012 2.44567 2.76759 3.17899 3.23155 3.68916 3.92253 3.99828 4.16397 4.28851 4.71423 4.78839 4.92109 5.03030 5.08363 5.24163 5.28027 5.38084 5.45773 5.68021 6.01548 6.21944 6.42881 6.95192 7.50716 8.98329 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.042911 B = 0.008994 C = 0.008055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.357129 B = 3112.302860 C = 3475.300760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.048 3.952 3 H 0.005 0.995 4 C -0.523 4.523 5 H 0.058 0.942 6 C 0.011 3.989 7 N -0.918 5.918 8 Si 0.943 3.057 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.270 1.270 12 C -0.074 4.074 13 H 0.089 0.911 14 C -0.118 4.118 15 C -0.554 4.554 16 S 2.389 3.611 17 O -0.984 6.984 18 O -0.984 6.984 19 C -0.563 4.563 20 H 0.030 0.970 21 H 0.043 0.957 22 H 0.049 0.951 23 H 0.258 0.742 24 H 0.112 0.888 25 H 0.083 0.917 26 H 0.159 0.841 27 H 0.160 0.840 28 H 0.124 0.876 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.040 -2.859 10.290 10.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.029 3.971 3 H 0.023 0.977 4 C -0.561 4.561 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.770 3.230 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.194 1.194 12 C -0.094 4.094 13 H 0.107 0.893 14 C -0.157 4.157 15 C -0.687 4.687 16 S 2.578 3.422 17 O -0.981 6.981 18 O -0.981 6.981 19 C -0.694 4.694 20 H 0.049 0.951 21 H 0.062 0.938 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.131 0.869 25 H 0.101 0.899 26 H 0.177 0.823 27 H 0.178 0.822 28 H 0.142 0.858 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.925 -2.761 10.620 11.012 hybrid contribution -0.356 -0.208 -1.782 1.829 sum 0.569 -2.969 8.839 9.341 Atomic orbital electron populations 1.21754 0.98060 0.99254 1.00303 1.18694 0.93053 0.94375 0.91003 0.97732 1.21623 1.30434 1.12301 0.91728 0.92387 1.25663 0.95638 0.95742 1.01709 1.70013 1.38048 1.24166 1.23603 0.85788 0.78921 0.78393 0.79936 1.20348 1.21547 1.19427 1.21655 0.89810 1.01757 0.96200 0.89276 1.22408 1.02960 1.00905 0.89414 1.30407 1.18005 1.12480 1.07837 1.08860 0.79977 0.73395 0.79940 1.93527 1.74031 1.46281 1.84304 1.93517 1.76799 1.45687 1.82085 1.30364 1.06044 1.11563 1.21419 0.95097 0.93800 0.93256 0.93305 0.86938 0.89882 0.82314 0.82227 0.85805 0.84828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.80 8.66 71.98 0.62 -5.18 15 2 C 0.05 2.12 1.74 -11.54 -0.02 2.10 15 3 H 0.00 0.22 8.13 -2.39 -0.02 0.20 15 4 C -0.52 -26.47 8.00 25.60 0.20 -26.27 15 5 H 0.06 2.85 7.36 -2.91 -0.02 2.83 15 6 C 0.01 0.57 5.30 84.65 0.45 1.01 15 7 N -0.92 -51.27 11.32 21.45 0.24 -51.02 15 8 Si 0.94 42.39 29.54 68.60 2.03 44.41 15 9 H -0.28 -12.23 7.11 99.48 0.71 -11.52 15 10 H -0.29 -13.04 7.11 99.48 0.71 -12.33 15 11 H -0.27 -11.79 7.11 99.48 0.71 -11.08 15 12 C -0.07 -2.43 2.14 -10.10 -0.02 -2.46 15 13 H 0.09 2.74 8.14 -2.39 -0.02 2.72 15 14 C -0.12 -2.90 5.00 31.59 0.16 -2.74 15 15 C -0.55 -10.45 7.31 72.68 0.53 -9.92 15 16 S 2.39 64.95 6.11 -56.49 -0.34 64.61 15 17 O -0.98 -33.59 18.15 -127.49 -2.31 -35.91 15 18 O -0.98 -32.26 18.15 -127.49 -2.31 -34.57 15 19 C -0.56 -17.71 5.91 72.38 0.43 -17.28 15 20 H 0.03 1.25 8.14 -2.39 -0.02 1.23 15 21 H 0.04 1.54 6.78 -2.39 -0.02 1.53 15 22 H 0.05 2.46 6.07 -2.39 -0.01 2.44 15 23 H 0.26 13.88 8.31 -92.71 -0.77 13.11 15 24 H 0.11 2.40 7.28 -2.39 -0.02 2.39 15 25 H 0.08 2.07 8.11 -2.39 -0.02 2.06 15 26 H 0.16 2.21 8.14 -2.39 -0.02 2.19 15 27 H 0.16 2.27 8.14 -2.39 -0.02 2.25 15 28 H 0.12 4.26 7.88 -2.39 -0.02 4.24 15 29 H 0.13 4.08 8.01 -2.39 -0.02 4.07 15 Total: -1.00 -67.67 249.12 0.78 -66.89 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 1.13 Total: 6.31 kcal Atomic # 6 Polarization: -63.07 SS G_CDS: 2.35 Total: -60.72 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: 0.24 Total: -51.02 kcal Atomic # 8 Polarization: -65.85 SS G_CDS: -4.63 Total: -70.48 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: 64.95 SS G_CDS: -0.34 Total: 64.61 kcal Total: -67.67 0.78 -66.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260703035.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.059 kcal (2) G-P(sol) polarization free energy of solvation -67.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds