Wall clock time and date at job start Mon Mar 30 2020 02:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40005 * 125.95982 * 2 1 4 4 C 1.30719 * 109.75948 * 179.71666 * 3 2 1 5 5 O 1.35915 * 125.65213 * 180.31859 * 4 3 2 6 6 C 1.41519 * 108.70260 * 0.41948 * 4 3 2 7 7 C 1.40655 * 133.20134 * 179.87939 * 6 4 3 8 8 C 1.35605 * 120.20352 * 179.66304 * 7 6 4 9 9 C 1.41303 * 120.43859 * 0.02562 * 8 7 6 10 10 C 1.41078 * 119.98413 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99651 * 204.91362 * 10 9 8 12 12 C 1.39929 * 120.00082 * 24.91520 * 10 9 8 13 13 N 1.30839 * 120.00374 * 18.03231 * 12 10 9 14 14 Si 1.86803 * 119.99919 * 198.03746 * 12 10 9 15 15 H 1.48494 * 109.47160 * 89.99448 * 14 12 10 16 16 H 1.48500 * 109.47054 * 209.99975 * 14 12 10 17 17 H 1.48504 * 109.46875 * 329.99936 * 14 12 10 18 18 C 1.40465 * 120.02653 * 0.02562 * 9 8 7 19 19 C 1.37479 * 125.96320 * 179.97438 * 2 1 3 20 20 H 1.09000 * 109.47243 * 270.02476 * 1 2 3 21 21 H 1.09005 * 109.47446 * 30.02092 * 1 2 3 22 22 H 1.08998 * 109.46935 * 150.02127 * 1 2 3 23 23 H 0.96699 * 113.99839 * 270.12012 * 5 4 3 24 24 H 1.07994 * 119.89748 * 359.67708 * 7 6 4 25 25 H 1.07996 * 119.78344 * 180.02562 * 8 7 6 26 26 H 0.96993 * 120.00492 * 179.97438 * 13 12 10 27 27 H 1.08004 * 120.23773 * 180.02562 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2871 1.1332 0.0000 4 6 3.5424 0.7685 0.0061 5 8 4.6112 1.6081 0.0141 6 6 3.6042 -0.6453 0.0006 7 6 4.6706 -1.5624 0.0011 8 6 4.4236 -2.8958 0.0017 9 6 3.0953 -3.3778 0.0012 10 6 2.8494 -4.7670 0.0023 11 1 1.9202 -5.1511 -0.3920 12 6 3.8092 -5.6471 0.5143 13 7 4.7559 -5.1987 1.2983 14 14 3.7391 -7.4622 0.0783 15 1 4.5325 -7.7065 -1.1529 16 1 4.3012 -8.2618 1.1963 17 1 2.3278 -7.8610 -0.1549 18 6 2.0197 -2.4744 -0.0004 19 6 2.2723 -1.1127 0.0005 20 1 -0.3634 0.0004 1.0277 21 1 -0.3634 0.8898 -0.5142 22 1 -0.3633 -0.8902 -0.5135 23 1 4.9242 1.8546 -0.8670 24 1 5.6892 -1.2037 0.0013 25 1 5.2475 -3.5940 0.0025 26 1 5.4210 -5.8088 1.6535 27 1 1.0031 -2.8390 -0.0004 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260704872.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:47 Heat of formation + Delta-G solvation = 18.019969 kcal Electronic energy + Delta-G solvation = -13989.913990 eV Core-core repulsion = 11520.257670 eV Total energy + Delta-G solvation = -2469.656321 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.89806 -38.45048 -37.80722 -35.20138 -33.42354 -31.32733 -30.57115 -27.35011 -26.71496 -23.19668 -22.57676 -21.68132 -19.58097 -18.36574 -17.62842 -17.12910 -16.86565 -16.21249 -15.41147 -15.30454 -14.76726 -14.38207 -13.80616 -13.68373 -13.37585 -13.16481 -12.85624 -12.69356 -12.50689 -12.04066 -11.83434 -11.42534 -11.09810 -10.95664 -10.53325 -9.29766 -8.81885 -8.46594 -6.45421 0.36255 1.14205 1.41657 1.43919 1.56503 1.60995 1.77573 2.19712 2.65478 3.14663 3.63028 3.97235 4.14823 4.48298 4.60704 4.66977 4.75773 4.90839 4.99493 5.06369 5.22999 5.44593 5.76563 5.80192 5.97025 6.18252 6.39432 6.53676 6.77426 6.82097 6.85137 6.98614 8.19968 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.044351 B = 0.008309 C = 0.007152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.178074 B = 3369.139871 C = 3914.231218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.421 5.421 3 N -0.335 5.335 4 C 0.284 3.716 5 O -0.466 6.466 6 C -0.312 4.312 7 C -0.047 4.047 8 C -0.176 4.176 9 C 0.126 3.874 10 C -0.470 4.470 11 H 0.088 0.912 12 C 0.038 3.962 13 N -0.805 5.805 14 Si 0.990 3.010 15 H -0.259 1.259 16 H -0.267 1.267 17 H -0.256 1.256 18 C -0.306 4.306 19 C 0.168 3.832 20 H 0.069 0.931 21 H 0.098 0.902 22 H 0.092 0.908 23 H 0.415 0.585 24 H 0.118 0.882 25 H 0.117 0.883 26 H 0.296 0.704 27 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.049 1.482 -3.563 4.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.215 5.215 3 N -0.162 5.162 4 C 0.072 3.928 5 O -0.272 6.272 6 C -0.322 4.322 7 C -0.067 4.067 8 C -0.196 4.196 9 C 0.121 3.879 10 C -0.498 4.498 11 H 0.106 0.894 12 C -0.180 4.180 13 N -0.429 5.429 14 Si 0.810 3.190 15 H -0.183 1.183 16 H -0.192 1.192 17 H -0.179 1.179 18 C -0.332 4.332 19 C 0.055 3.945 20 H 0.087 0.913 21 H 0.116 0.884 22 H 0.111 0.889 23 H 0.273 0.727 24 H 0.136 0.864 25 H 0.134 0.866 26 H 0.107 0.893 27 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.764 2.460 -2.808 4.645 hybrid contribution 0.660 -1.134 -0.386 1.367 sum -2.105 1.326 -3.193 4.048 Atomic orbital electron populations 1.21834 0.72476 1.04833 1.03250 1.48003 1.05853 1.00155 1.67520 1.76377 1.01631 1.10253 1.27960 1.19664 0.86544 0.87140 0.99485 1.84756 1.41870 1.65263 1.35300 1.18880 0.94386 0.92842 1.26042 1.20141 0.96710 0.92284 0.97599 1.21033 0.97418 0.94255 1.06869 1.17773 0.91134 0.93557 0.85407 1.19961 1.03749 0.91239 1.34896 0.89398 1.26923 0.92876 1.06679 0.91534 1.69867 1.12053 1.40374 1.20654 0.85067 0.80193 0.74610 0.79111 1.18325 1.19161 1.17910 1.19782 0.98309 0.88216 1.26881 1.18764 0.89704 0.89580 0.96483 0.91287 0.88388 0.88930 0.72660 0.86358 0.86551 0.89263 0.87768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.53 11.44 127.77 1.46 4.99 15 2 N -0.42 -17.94 4.08 -361.07 -1.47 -19.42 15 3 N -0.33 -14.67 12.47 -170.14 -2.12 -16.79 15 4 C 0.28 12.42 8.47 85.67 0.73 13.15 15 5 O -0.47 -16.55 13.66 -92.59 -1.26 -17.81 15 6 C -0.31 -15.09 6.18 -21.16 -0.13 -15.22 15 7 C -0.05 -2.23 10.03 22.25 0.22 -2.01 15 8 C -0.18 -9.00 8.59 22.41 0.19 -8.81 15 9 C 0.13 6.65 5.57 -21.29 -0.12 6.53 15 10 C -0.47 -23.68 9.02 23.38 0.21 -23.46 15 11 H 0.09 4.21 7.91 -2.91 -0.02 4.18 15 12 C 0.04 1.78 5.12 85.25 0.44 2.21 15 13 N -0.81 -39.15 10.97 21.82 0.24 -38.91 15 14 Si 0.99 34.70 29.60 68.60 2.03 36.73 15 15 H -0.26 -8.78 7.11 99.48 0.71 -8.07 15 16 H -0.27 -8.92 7.11 99.48 0.71 -8.22 15 17 H -0.26 -8.71 7.11 99.48 0.71 -8.00 15 18 C -0.31 -15.30 9.76 22.87 0.22 -15.08 15 19 C 0.17 8.14 6.87 39.03 0.27 8.40 15 20 H 0.07 1.91 8.14 -2.39 -0.02 1.89 15 21 H 0.10 2.47 8.14 -2.38 -0.02 2.46 15 22 H 0.09 2.53 8.14 -2.39 -0.02 2.51 15 23 H 0.41 9.70 9.06 -74.06 -0.67 9.03 15 24 H 0.12 4.95 8.06 -2.91 -0.02 4.93 15 25 H 0.12 6.00 6.15 -2.91 -0.02 5.98 15 26 H 0.30 12.81 8.30 -92.71 -0.77 12.04 15 27 H 0.10 4.83 8.06 -2.91 -0.02 4.81 15 Total: -1.00 -63.39 245.09 1.44 -61.95 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.53 Total: 23.54 kcal Atomic # 6 Polarization: -32.79 SS G_CDS: 3.49 Total: -29.30 kcal Atomic # 7 Polarization: -71.75 SS G_CDS: -3.36 Total: -75.11 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -1.26 Total: -17.81 kcal Atomic # 14 Polarization: 34.70 SS G_CDS: 2.03 Total: 36.73 kcal Total: -63.39 1.44 -61.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260704872.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.973 kcal (2) G-P(sol) polarization free energy of solvation -63.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds