Wall clock time and date at job start Mon Mar 30 2020 02:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37904 * 125.84009 * 2 1 4 4 C 1.39505 * 126.06672 * 359.97105 * 3 2 1 5 5 H 1.07997 * 120.00342 * 359.72068 * 4 3 2 6 6 C 1.40150 * 120.00006 * 179.44248 * 4 3 2 7 7 N 1.30793 * 119.99828 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00289 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.46847 * 89.99855 * 8 6 4 10 10 H 1.48504 * 109.47424 * 210.00081 * 8 6 4 11 11 H 1.48502 * 109.46888 * 330.00171 * 8 6 4 12 12 C 1.40203 * 107.86782 * 179.71209 * 3 2 1 13 13 C 1.38178 * 107.60618 * 0.26302 * 12 3 2 14 14 C 1.37579 * 125.84140 * 180.16163 * 2 1 3 15 15 C 1.46330 * 125.84157 * 359.97438 * 14 2 1 16 16 N 1.31891 * 125.77212 * 180.32744 * 15 14 2 17 17 C 1.33695 * 108.64876 * 180.02562 * 16 15 14 18 18 C 1.35054 * 107.92492 * 359.97438 * 17 16 15 19 19 O 1.34694 * 125.76569 * 0.02562 * 15 14 2 20 20 H 1.09006 * 109.47122 * 90.02897 * 1 2 3 21 21 H 1.09005 * 109.47519 * 210.02930 * 1 2 3 22 22 H 1.08997 * 109.47591 * 330.02910 * 1 2 3 23 23 H 0.97004 * 120.00274 * 179.97438 * 7 6 4 24 24 H 1.08002 * 126.19820 * 180.23428 * 12 3 2 25 25 H 1.08003 * 126.05965 * 180.02562 * 13 12 3 26 26 H 1.08004 * 126.04009 * 180.02562 * 17 16 15 27 27 H 1.07998 * 126.33686 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2724 1.1179 0.0000 4 6 1.8392 2.4440 -0.0006 5 1 0.7825 2.6669 -0.0056 6 6 2.7752 3.4870 0.0113 7 7 4.0549 3.2171 0.0224 8 14 2.1952 5.2627 0.0113 9 1 2.0284 5.7289 1.4113 10 1 3.2005 6.1119 -0.6769 11 1 0.8955 5.3588 -0.7006 12 6 3.6061 0.6853 0.0067 13 6 3.5972 -0.6964 0.0047 14 6 2.2706 -1.1153 -0.0031 15 6 1.8107 -2.5044 -0.0065 16 7 2.5843 -3.5727 -0.0034 17 6 1.8090 -4.6619 -0.0088 18 6 0.5211 -4.2554 -0.0148 19 8 0.5257 -2.9083 -0.0076 20 1 -0.3634 -0.0005 -1.0277 21 1 -0.3634 -0.8897 0.5143 22 1 -0.3634 0.8902 0.5134 23 1 4.7029 3.9390 0.0303 24 1 4.4817 1.3175 0.0120 25 1 4.4663 -1.3377 0.0089 26 1 2.1521 -5.6860 -0.0076 27 1 -0.3510 -4.8924 -0.0196 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260707264.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:20 Heat of formation + Delta-G solvation = 41.574192 kcal Electronic energy + Delta-G solvation = -14026.875977 eV Core-core repulsion = 11558.241045 eV Total energy + Delta-G solvation = -2468.634933 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.89980 -40.97635 -35.65573 -35.55852 -33.20281 -31.86390 -29.80206 -27.03210 -26.59441 -23.41385 -23.17233 -21.15600 -20.46668 -18.83641 -18.18247 -17.40422 -17.23248 -16.33263 -15.60866 -15.49544 -14.87288 -14.21752 -13.96341 -13.85063 -13.57989 -13.19507 -12.83893 -12.77387 -12.41159 -12.23040 -12.08269 -11.68707 -11.33770 -11.25573 -10.13266 -9.18695 -8.58912 -8.53612 -6.23950 0.27545 1.32571 1.45137 1.59738 1.62232 2.00021 2.17303 2.18342 2.47598 2.65797 3.34823 3.55565 4.18014 4.23333 4.31973 4.49092 4.63159 4.85235 4.97765 5.07356 5.15984 5.24409 5.45019 5.65564 5.82857 6.08424 6.18861 6.71543 6.79640 6.92635 7.12232 7.25188 8.35986 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.066130 B = 0.007422 C = 0.006697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.308573 B = 3771.604753 C = 4179.760736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.489 5.489 3 C 0.228 3.772 4 C -0.467 4.467 5 H 0.088 0.912 6 C 0.033 3.967 7 N -0.812 5.812 8 Si 1.005 2.995 9 H -0.262 1.262 10 H -0.267 1.267 11 H -0.256 1.256 12 C -0.311 4.311 13 C -0.098 4.098 14 C -0.097 4.097 15 C 0.284 3.716 16 N -0.544 5.544 17 C -0.047 4.047 18 C -0.115 4.115 19 O -0.223 6.223 20 H 0.061 0.939 21 H 0.075 0.925 22 H 0.085 0.915 23 H 0.290 0.710 24 H 0.153 0.847 25 H 0.122 0.878 26 H 0.212 0.788 27 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.190 -4.250 0.057 8.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.175 5.175 3 C 0.114 3.886 4 C -0.501 4.501 5 H 0.106 0.894 6 C -0.184 4.184 7 N -0.439 5.439 8 Si 0.825 3.175 9 H -0.187 1.187 10 H -0.192 1.192 11 H -0.179 1.179 12 C -0.333 4.333 13 C -0.125 4.125 14 C -0.201 4.201 15 C 0.086 3.914 16 N -0.275 5.275 17 C -0.187 4.187 18 C -0.184 4.184 19 O -0.113 6.113 20 H 0.080 0.920 21 H 0.094 0.906 22 H 0.104 0.896 23 H 0.102 0.898 24 H 0.170 0.830 25 H 0.140 0.860 26 H 0.229 0.771 27 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -6.692 -4.268 0.064 7.937 hybrid contribution -0.641 0.251 -0.012 0.689 sum -7.333 -4.017 0.052 8.361 Atomic orbital electron populations 1.21772 0.77331 1.03440 1.02276 1.44051 1.05513 1.04321 1.63622 1.18632 0.88992 0.86441 0.94517 1.18933 0.95633 0.88653 1.46880 0.89358 1.26826 0.94103 1.06113 0.91329 1.69767 1.03110 1.36356 1.34624 0.84853 0.79176 0.74039 0.79479 1.18668 1.19193 1.17918 1.21931 0.97364 0.92782 1.21252 1.20985 0.93057 0.95567 1.02928 1.16735 0.90171 0.80362 1.32789 1.22800 0.76847 0.93325 0.98415 1.70679 1.34577 0.97855 1.24413 1.23903 0.90158 0.99515 1.05080 1.25869 1.02118 0.79785 1.10635 1.84545 1.30797 1.24579 1.71366 0.92043 0.90617 0.89603 0.89846 0.82953 0.85995 0.77120 0.72719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.63 10.47 127.77 1.34 4.97 15 2 N -0.49 -24.28 3.23 -524.63 -1.69 -25.97 15 3 C 0.23 12.37 6.67 38.97 0.26 12.63 15 4 C -0.47 -23.76 8.96 23.04 0.21 -23.55 15 5 H 0.09 4.12 7.11 -2.91 -0.02 4.10 15 6 C 0.03 1.58 5.50 85.31 0.47 2.05 15 7 N -0.81 -40.80 10.21 21.87 0.22 -40.57 15 8 Si 1.00 35.61 29.56 68.60 2.03 37.64 15 9 H -0.26 -8.98 7.11 99.48 0.71 -8.27 15 10 H -0.27 -9.09 7.11 99.48 0.71 -8.38 15 11 H -0.26 -8.70 7.11 99.48 0.71 -7.99 15 12 C -0.31 -17.42 9.73 22.73 0.22 -17.19 15 13 C -0.10 -5.21 10.74 22.47 0.24 -4.96 15 14 C -0.10 -4.96 6.89 40.56 0.28 -4.68 15 15 C 0.28 13.01 7.96 86.79 0.69 13.71 15 16 N -0.54 -23.57 11.27 -305.33 -3.44 -27.01 15 17 C -0.05 -1.50 11.88 83.68 0.99 -0.51 15 18 C -0.12 -3.31 12.19 67.09 0.82 -2.49 15 19 O -0.22 -8.63 8.84 -10.40 -0.09 -8.72 15 20 H 0.06 2.21 8.14 -2.38 -0.02 2.19 15 21 H 0.08 2.74 6.46 -2.38 -0.02 2.73 15 22 H 0.09 3.07 7.31 -2.39 -0.02 3.05 15 23 H 0.29 13.03 8.30 -92.71 -0.77 12.26 15 24 H 0.15 8.76 5.64 -2.91 -0.02 8.75 15 25 H 0.12 6.11 8.06 -2.91 -0.02 6.08 15 26 H 0.21 4.76 8.06 -2.91 -0.02 4.74 15 27 H 0.26 4.14 8.06 -2.91 -0.02 4.12 15 Total: -1.00 -65.02 242.53 3.73 -61.28 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 1.19 Total: 23.38 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: 5.52 Total: -20.03 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -4.91 Total: -93.55 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -0.09 Total: -8.72 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.64 kcal Total: -65.02 3.73 -61.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260707264.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.857 kcal (2) G-P(sol) polarization free energy of solvation -65.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds