Wall clock time and date at job start Mon Mar 30 2020 02:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35735 * 116.99508 * 2 1 4 4 C 1.38484 * 120.50256 * 359.71916 * 3 2 1 5 5 C 1.40034 * 119.45107 * 179.72824 * 4 3 2 6 6 C 1.35451 * 120.45609 * 0.54835 * 5 4 3 7 7 N 1.36383 * 120.81419 * 359.74092 * 6 5 4 8 8 C 1.37775 * 132.99993 * 180.02562 * 7 6 5 9 9 C 1.39508 * 125.66011 * 359.97438 * 8 7 6 10 10 H 1.08001 * 120.00397 * 359.97438 * 9 8 7 11 11 C 1.39848 * 119.99972 * 179.97438 * 9 8 7 12 12 N 1.30980 * 120.00062 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00316 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47096 * 59.99655 * 13 11 9 15 15 H 1.48496 * 109.47628 * 179.97438 * 13 11 9 16 16 H 1.48508 * 109.46791 * 300.00015 * 13 11 9 17 17 N 1.33468 * 108.67746 * 179.97438 * 8 7 6 18 18 C 1.32124 * 109.86208 * 0.02562 * 17 8 7 19 19 C 1.37807 * 120.36315 * 359.97438 * 7 6 5 20 20 H 1.09002 * 109.47382 * 60.00137 * 1 2 3 21 21 H 1.09001 * 109.46938 * 300.00124 * 1 2 3 22 22 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 23 23 H 1.08000 * 120.27688 * 0.02562 * 4 3 2 24 24 H 1.08004 * 119.77014 * 180.26919 * 5 4 3 25 25 H 1.08000 * 119.59130 * 179.71693 * 6 5 4 26 26 H 0.97005 * 120.00402 * 180.02562 * 12 11 9 27 27 H 1.07992 * 125.93777 * 179.97438 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2095 0.0000 4 6 1.3010 2.3774 -0.0058 5 6 1.9594 3.6133 0.0001 6 6 3.3127 3.6703 0.0002 7 7 4.0600 2.5294 0.0000 8 6 5.4178 2.2955 0.0005 9 6 6.4117 3.2744 0.0010 10 1 6.1402 4.3198 0.0006 11 6 7.7598 2.9023 0.0021 12 7 8.0892 1.6346 0.0021 13 14 9.0907 4.2130 0.0035 14 1 8.9511 5.0589 1.2160 15 1 10.4258 3.5629 0.0051 16 1 8.9531 5.0594 -1.2090 17 7 5.6243 0.9769 0.0004 18 6 4.4661 0.3411 -0.0007 19 6 3.4471 1.2952 0.0000 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.2219 2.3354 -0.0101 24 1 1.3842 4.5274 -0.0001 25 1 3.8061 4.6310 0.0002 26 1 9.0242 1.3763 0.0032 27 1 4.3313 -0.7304 -0.0014 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260723375.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:39 Heat of formation + Delta-G solvation = 45.759844 kcal Electronic energy + Delta-G solvation = -14118.249903 eV Core-core repulsion = 11649.796474 eV Total energy + Delta-G solvation = -2468.453429 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.87061 -38.50094 -35.47911 -33.47268 -31.20898 -29.52147 -27.89517 -26.94402 -24.76933 -22.11292 -20.96932 -20.39224 -18.00458 -16.49234 -16.02148 -15.41774 -15.36357 -15.00603 -14.22131 -13.95017 -13.71128 -12.99516 -12.54250 -12.07432 -11.52080 -11.45185 -11.17844 -11.03693 -10.75667 -10.57349 -10.45922 -10.32993 -9.33546 -8.80915 -8.26319 -7.74729 -6.62682 -6.48941 -4.27783 2.02751 2.51630 3.06774 3.07495 3.08709 3.55251 3.91267 4.31927 4.48184 4.65461 5.31781 5.40126 5.43033 5.59425 5.66543 5.76722 5.87173 6.11516 6.36582 6.63240 6.86629 6.93057 7.09037 7.18741 7.43492 7.77925 7.95496 8.17615 8.25796 8.71464 9.06268 9.81026 10.28761 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.055771 B = 0.008269 C = 0.007229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.929746 B = 3385.319048 C = 3872.103312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.313 6.313 3 C 0.206 3.794 4 C -0.309 4.309 5 C -0.147 4.147 6 C 0.046 3.954 7 N -0.413 5.413 8 C 0.366 3.634 9 C -0.440 4.440 10 H 0.085 0.915 11 C 0.076 3.924 12 N -0.734 5.734 13 Si 0.921 3.079 14 H -0.265 1.265 15 H -0.276 1.276 16 H -0.265 1.265 17 N -0.478 5.478 18 C 0.045 3.955 19 C -0.138 4.138 20 H 0.051 0.949 21 H 0.051 0.949 22 H 0.093 0.907 23 H 0.112 0.888 24 H 0.121 0.879 25 H 0.140 0.860 26 H 0.278 0.722 27 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.912 1.573 -0.001 8.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.224 6.224 3 C 0.158 3.842 4 C -0.330 4.330 5 C -0.169 4.169 6 C -0.075 4.075 7 N -0.094 5.094 8 C 0.131 3.869 9 C -0.479 4.479 10 H 0.103 0.897 11 C -0.149 4.149 12 N -0.357 5.357 13 Si 0.744 3.256 14 H -0.190 1.190 15 H -0.201 1.201 16 H -0.189 1.189 17 N -0.194 5.194 18 C -0.118 4.118 19 C -0.242 4.242 20 H 0.070 0.930 21 H 0.070 0.930 22 H 0.111 0.889 23 H 0.130 0.870 24 H 0.139 0.861 25 H 0.157 0.843 26 H 0.089 0.911 27 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.812 0.890 -0.001 6.870 hybrid contribution -0.663 1.153 0.002 1.331 sum -7.476 2.044 0.001 7.750 Atomic orbital electron populations 1.22934 0.79181 1.02927 1.01140 1.85932 1.20562 1.27653 1.88277 1.18082 0.89439 0.83576 0.93057 1.20556 0.98104 0.91652 1.22722 1.19899 0.92276 0.97151 1.07597 1.21068 0.91534 0.89904 1.04955 1.42513 1.07224 1.03911 1.55752 1.20273 0.77755 0.91733 0.97116 1.18093 0.89101 0.92450 1.48211 0.89737 1.25760 0.99300 0.96314 0.93485 1.70109 1.19179 1.16284 1.30174 0.86176 0.78987 0.80595 0.79798 1.18955 1.20073 1.18948 1.71191 1.22810 1.01770 1.23670 1.22730 0.88012 0.97703 1.03319 1.17917 0.89974 0.87730 1.28572 0.93033 0.93043 0.88892 0.86982 0.86148 0.84261 0.91094 0.82967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.82 101.05 0.99 1.43 15 2 O -0.31 -5.94 10.50 -18.91 -0.20 -6.14 15 3 C 0.21 4.50 6.75 -38.66 -0.26 4.24 15 4 C -0.31 -6.04 9.14 -38.82 -0.35 -6.39 15 5 C -0.15 -2.83 9.98 -39.90 -0.40 -3.23 15 6 C 0.05 1.00 10.81 -16.52 -0.18 0.82 15 7 N -0.41 -10.62 2.99 -60.15 -0.18 -10.80 15 8 C 0.37 10.29 7.47 -155.14 -1.16 9.13 15 9 C -0.44 -11.75 9.19 -38.51 -0.35 -12.10 15 10 H 0.08 2.06 7.67 -52.49 -0.40 1.66 15 11 C 0.08 1.94 5.49 -17.31 -0.10 1.85 15 12 N -0.73 -19.77 11.86 55.54 0.66 -19.11 15 13 Si 0.92 18.47 29.56 -169.99 -5.02 13.45 15 14 H -0.26 -5.21 7.11 56.52 0.40 -4.81 15 15 H -0.28 -5.39 7.11 56.52 0.40 -4.99 15 16 H -0.26 -5.21 7.11 56.52 0.40 -4.81 15 17 N -0.48 -13.77 9.29 -11.99 -0.11 -13.88 15 18 C 0.05 1.17 11.99 -16.92 -0.20 0.97 15 19 C -0.14 -3.48 6.77 -83.84 -0.57 -4.05 15 20 H 0.05 0.62 7.67 -51.93 -0.40 0.23 15 21 H 0.05 0.62 7.70 -51.93 -0.40 0.22 15 22 H 0.09 0.94 8.14 -51.93 -0.42 0.51 15 23 H 0.11 1.83 6.38 -52.49 -0.33 1.50 15 24 H 0.12 1.88 8.06 -52.48 -0.42 1.45 15 25 H 0.14 2.68 7.89 -52.49 -0.41 2.27 15 26 H 0.28 6.77 8.30 -40.82 -0.34 6.43 15 27 H 0.15 3.48 8.06 -52.49 -0.42 3.06 15 LS Contribution 242.80 15.07 3.66 3.66 Total: -1.00 -31.32 242.80 -6.13 -37.45 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -2.35 Total: 2.71 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -2.58 Total: -7.34 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.37 Total: -43.79 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.20 Total: -6.14 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.02 Total: 13.45 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -31.32 -6.13 -37.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260723375.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.205 kcal (2) G-P(sol) polarization free energy of solvation -31.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds