Wall clock time and date at job start Mon Mar 30 2020 02:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99794 * 2 1 4 4 H 1.09002 * 109.30840 * 29.75583 * 3 2 1 5 5 C 1.53096 * 109.39113 * 269.99948 * 3 2 1 6 6 S 1.81744 * 108.94652 * 176.89471 * 5 3 2 7 7 O 1.42097 * 109.46940 * 169.19911 * 6 5 3 8 8 C 1.81745 * 102.22383 * 53.20130 * 6 5 3 9 9 C 1.53102 * 108.84186 * 306.73606 * 8 6 5 10 10 C 1.52571 * 109.49089 * 149.43316 * 3 2 1 11 11 H 1.09000 * 109.13202 * 70.37044 * 10 3 2 12 12 C 1.50699 * 109.16980 * 311.05923 * 10 3 2 13 13 H 1.08004 * 120.00045 * 358.65529 * 12 10 3 14 14 C 1.37876 * 120.00029 * 178.65355 * 12 10 3 15 15 N 1.31517 * 120.00241 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00276 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47003 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47185 * 120.00205 * 16 14 12 19 19 H 1.48497 * 109.47405 * 240.00431 * 16 14 12 20 20 H 1.08999 * 109.47018 * 59.99347 * 1 2 3 21 21 H 1.08996 * 109.47237 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46894 * 299.99936 * 1 2 3 23 23 H 1.09002 * 109.57599 * 57.02200 * 5 3 2 24 24 H 1.09001 * 109.57403 * 296.76395 * 5 3 2 25 25 H 1.09003 * 109.57558 * 66.54079 * 8 6 5 26 26 H 1.08993 * 109.58118 * 186.79613 * 8 6 5 27 27 H 1.08997 * 109.38990 * 183.17357 * 9 8 6 28 28 H 1.09003 * 109.38595 * 302.97484 * 9 8 6 29 29 H 0.96990 * 120.00762 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3410 1.9980 0.5106 5 6 2.2170 1.7698 -1.4441 6 16 2.8701 3.4658 -1.4309 7 8 3.3001 3.8180 -2.7386 8 6 4.3147 3.3133 -0.3387 9 6 3.8713 2.6783 0.9820 10 6 3.3487 1.2669 0.7314 11 1 4.0708 0.7189 0.1262 12 6 3.1710 0.5619 2.0515 13 1 2.1959 0.2014 2.3442 14 6 4.2533 0.3771 2.8854 15 7 5.4406 0.8164 2.5291 16 14 4.0331 -0.4961 4.5220 17 1 2.6105 -0.8892 4.6858 18 1 4.8884 -1.7097 4.5546 19 1 4.4254 0.4157 5.6264 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8901 23 1 1.2648 1.7493 -1.9742 24 1 2.9266 1.1091 -1.9421 25 1 5.0663 2.6823 -0.8131 26 1 4.7346 4.3010 -0.1483 27 1 4.7195 2.6342 1.6651 28 1 3.0800 3.2821 1.4261 29 1 6.2020 0.6867 3.1159 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260757051.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:02 Heat of formation + Delta-G solvation = -89.906958 kcal Electronic energy + Delta-G solvation = -13539.336560 eV Core-core repulsion = 11168.151376 eV Total energy + Delta-G solvation = -2371.185183 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.93106 -35.29784 -34.77181 -31.98165 -29.97305 -27.54487 -26.01003 -23.51209 -21.88132 -19.67119 -17.07405 -16.54835 -15.93870 -15.06636 -14.82712 -14.33692 -14.08067 -13.85979 -13.14557 -12.97075 -12.62281 -12.34124 -11.69234 -11.40066 -10.96947 -10.87485 -10.79559 -10.73106 -10.35351 -9.98184 -9.50633 -9.27743 -9.02274 -8.74137 -8.35084 -7.74713 -6.02012 -4.07014 2.09979 3.02292 3.29156 3.37895 3.41842 4.23205 4.42627 4.66160 5.28825 5.39349 5.53203 5.70598 5.72807 5.86058 5.93020 6.02736 6.07479 6.30013 6.42217 6.65584 6.88421 7.06451 7.63210 7.68010 7.95760 8.13966 8.37262 8.96738 9.56948 11.03886 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.032919 B = 0.011332 C = 0.008794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.366795 B = 2470.302380 C = 3183.337448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.362 6.362 3 C 0.124 3.876 4 H 0.062 0.938 5 C -0.455 4.455 6 S 1.209 4.791 7 O -0.879 6.879 8 C -0.418 4.418 9 C -0.090 4.090 10 C 0.034 3.966 11 H 0.032 0.968 12 C -0.492 4.492 13 H 0.063 0.937 14 C 0.056 3.944 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.285 1.285 20 H 0.028 0.972 21 H 0.074 0.926 22 H 0.039 0.961 23 H 0.099 0.901 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.113 0.887 28 H 0.051 0.949 29 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.240 4.526 -1.608 9.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.280 6.280 3 C 0.066 3.934 4 H 0.080 0.920 5 C -0.593 4.593 6 S 1.409 4.591 7 O -0.875 6.875 8 C -0.557 4.557 9 C -0.129 4.129 10 C 0.015 3.985 11 H 0.050 0.950 12 C -0.530 4.530 13 H 0.081 0.919 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.722 3.278 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.211 1.211 20 H 0.047 0.953 21 H 0.093 0.907 22 H 0.058 0.942 23 H 0.117 0.883 24 H 0.106 0.894 25 H 0.100 0.900 26 H 0.118 0.882 27 H 0.131 0.869 28 H 0.070 0.930 29 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.293 5.170 -2.061 9.988 hybrid contribution 1.367 -1.878 -0.063 2.324 sum -6.926 3.292 -2.124 7.957 Atomic orbital electron populations 1.22697 0.83448 1.01640 0.99019 1.88064 1.17403 1.28143 1.94389 1.21898 0.97993 0.84087 0.89472 0.91991 1.28194 1.07908 1.18161 1.05015 1.69809 1.03614 0.93572 0.92104 1.93017 1.82915 1.74907 1.36637 1.27555 1.12912 1.05974 1.09304 1.21355 1.03190 0.95309 0.93076 1.18854 0.89635 0.93815 0.96155 0.94951 1.21046 0.95194 1.35448 1.01352 0.91866 1.24978 0.95243 0.95807 0.98395 1.69855 0.99503 1.46807 1.37260 0.86507 0.78222 0.79391 0.83707 1.19731 1.21228 1.21125 0.95305 0.90742 0.94249 0.88262 0.89365 0.90045 0.88232 0.86897 0.93026 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.81 101.05 1.09 1.53 15 2 O -0.36 -7.39 9.36 -35.23 -0.33 -7.72 15 3 C 0.12 2.39 1.98 -26.90 -0.05 2.33 15 4 H 0.06 1.02 7.69 -51.93 -0.40 0.62 15 5 C -0.45 -7.88 6.04 37.21 0.22 -7.66 15 6 S 1.21 19.30 13.75 -107.50 -1.48 17.83 15 7 O -0.88 -18.89 18.14 -35.23 -0.64 -19.53 15 8 C -0.42 -7.58 6.44 37.21 0.24 -7.34 15 9 C -0.09 -1.86 4.92 -26.89 -0.13 -1.99 15 10 C 0.03 0.79 1.66 -92.21 -0.15 0.63 15 11 H 0.03 0.86 8.08 -51.93 -0.42 0.45 15 12 C -0.49 -12.76 8.07 -34.44 -0.28 -13.04 15 13 H 0.06 1.64 7.34 -52.48 -0.39 1.26 15 14 C 0.06 1.49 5.25 -17.82 -0.09 1.39 15 15 N -0.89 -24.61 11.29 55.43 0.63 -23.98 15 16 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 15 17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 20 H 0.03 0.37 7.82 -51.93 -0.41 -0.03 15 21 H 0.07 1.01 8.14 -51.93 -0.42 0.59 15 22 H 0.04 0.55 8.08 -51.92 -0.42 0.13 15 23 H 0.10 1.49 7.82 -51.93 -0.41 1.08 15 24 H 0.09 1.73 8.14 -51.93 -0.42 1.30 15 25 H 0.08 1.66 8.14 -51.93 -0.42 1.24 15 26 H 0.10 1.58 8.14 -51.93 -0.42 1.16 15 27 H 0.11 2.71 5.81 -51.93 -0.30 2.41 15 28 H 0.05 0.91 8.06 -51.93 -0.42 0.49 15 29 H 0.26 6.86 8.31 -40.82 -0.34 6.52 15 LS Contribution 250.15 15.07 3.77 3.77 Total: -1.00 -32.95 250.15 -6.21 -39.16 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -3.98 Total: -1.05 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: 0.85 Total: -24.14 kcal Atomic # 7 Polarization: -24.61 SS G_CDS: 0.63 Total: -23.98 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.97 Total: -27.26 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 19.30 SS G_CDS: -1.48 Total: 17.83 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -32.95 -6.21 -39.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260757051.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.748 kcal (2) G-P(sol) polarization free energy of solvation -32.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds