Wall clock time and date at job start Mon Mar 30 2020 02:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 113.99794 * 2 1 4 4 H 1.09002 * 109.30840 * 29.75583 * 3 2 1 5 5 C 1.53096 * 109.39113 * 269.99948 * 3 2 1 6 6 S 1.81744 * 108.94652 * 176.89471 * 5 3 2 7 7 O 1.42097 * 109.46940 * 169.19911 * 6 5 3 8 8 C 1.81745 * 102.22383 * 53.20130 * 6 5 3 9 9 C 1.53102 * 108.84186 * 306.73606 * 8 6 5 10 10 C 1.52571 * 109.49089 * 149.43316 * 3 2 1 11 11 H 1.09000 * 109.13202 * 70.37044 * 10 3 2 12 12 C 1.50699 * 109.16980 * 311.05923 * 10 3 2 13 13 H 1.08004 * 120.00045 * 358.65529 * 12 10 3 14 14 C 1.37876 * 120.00029 * 178.65355 * 12 10 3 15 15 N 1.31517 * 120.00241 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00276 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47003 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47185 * 120.00205 * 16 14 12 19 19 H 1.48497 * 109.47405 * 240.00431 * 16 14 12 20 20 H 1.08999 * 109.47018 * 59.99347 * 1 2 3 21 21 H 1.08996 * 109.47237 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46894 * 299.99936 * 1 2 3 23 23 H 1.09002 * 109.57599 * 57.02200 * 5 3 2 24 24 H 1.09001 * 109.57403 * 296.76395 * 5 3 2 25 25 H 1.09003 * 109.57558 * 66.54079 * 8 6 5 26 26 H 1.08993 * 109.58118 * 186.79613 * 8 6 5 27 27 H 1.08997 * 109.38990 * 183.17357 * 9 8 6 28 28 H 1.09003 * 109.38595 * 302.97484 * 9 8 6 29 29 H 0.96990 * 120.00762 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3410 1.9980 0.5106 5 6 2.2170 1.7698 -1.4441 6 16 2.8701 3.4658 -1.4309 7 8 3.3001 3.8180 -2.7386 8 6 4.3147 3.3133 -0.3387 9 6 3.8713 2.6783 0.9820 10 6 3.3487 1.2669 0.7314 11 1 4.0708 0.7189 0.1262 12 6 3.1710 0.5619 2.0515 13 1 2.1959 0.2014 2.3442 14 6 4.2533 0.3771 2.8854 15 7 5.4406 0.8164 2.5291 16 14 4.0331 -0.4961 4.5220 17 1 2.6105 -0.8892 4.6858 18 1 4.8884 -1.7097 4.5546 19 1 4.4254 0.4157 5.6264 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8901 23 1 1.2648 1.7493 -1.9742 24 1 2.9266 1.1091 -1.9421 25 1 5.0663 2.6823 -0.8131 26 1 4.7346 4.3010 -0.1483 27 1 4.7195 2.6342 1.6651 28 1 3.0800 3.2821 1.4261 29 1 6.2020 0.6867 3.1159 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260757051.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:01 Heat of formation + Delta-G solvation = -114.492399 kcal Electronic energy + Delta-G solvation = -13540.402664 eV Core-core repulsion = 11168.151376 eV Total energy + Delta-G solvation = -2372.251288 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.44961 -36.90813 -36.43387 -33.87554 -31.44349 -29.29322 -27.28274 -25.33128 -23.39173 -21.33458 -18.56293 -18.37914 -17.44868 -16.74625 -16.27484 -15.97776 -15.57289 -15.34058 -14.66508 -14.56307 -14.09516 -13.96846 -13.37180 -13.03286 -12.70405 -12.56297 -12.39262 -12.30379 -11.99215 -11.70297 -11.15930 -10.95307 -10.76096 -10.35159 -10.21378 -9.23278 -8.02358 -6.13764 0.72951 1.44729 1.48258 1.58615 1.61895 2.49178 2.79876 3.19903 3.38314 3.96429 4.08499 4.20428 4.40901 4.51381 4.63925 4.73389 4.76776 4.92652 4.99474 5.11044 5.26607 5.36219 5.71918 5.90368 6.12511 6.42703 6.69743 6.97393 7.53346 9.01947 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.032919 B = 0.011332 C = 0.008794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.366795 B = 2470.302380 C = 3183.337448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.402 6.402 3 C 0.126 3.874 4 H 0.099 0.901 5 C -0.458 4.458 6 S 1.309 4.691 7 O -0.926 6.926 8 C -0.426 4.426 9 C -0.086 4.086 10 C 0.028 3.972 11 H -0.021 1.021 12 C -0.501 4.501 13 H 0.062 0.938 14 C 0.006 3.994 15 N -0.923 5.923 16 Si 0.951 3.049 17 H -0.264 1.264 18 H -0.294 1.294 19 H -0.278 1.278 20 H 0.055 0.945 21 H 0.084 0.916 22 H 0.052 0.948 23 H 0.132 0.868 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.125 0.875 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.428 5.481 -1.317 11.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.321 6.321 3 C 0.068 3.932 4 H 0.117 0.883 5 C -0.596 4.596 6 S 1.509 4.491 7 O -0.921 6.921 8 C -0.565 4.565 9 C -0.125 4.125 10 C 0.009 3.991 11 H -0.002 1.002 12 C -0.539 4.539 13 H 0.080 0.920 14 C -0.191 4.191 15 N -0.564 5.564 16 Si 0.778 3.222 17 H -0.188 1.188 18 H -0.221 1.221 19 H -0.204 1.204 20 H 0.073 0.927 21 H 0.103 0.897 22 H 0.070 0.930 23 H 0.150 0.850 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.144 0.856 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.493 6.125 -1.767 12.278 hybrid contribution 2.014 -2.244 -0.178 3.021 sum -8.479 3.881 -1.945 9.526 Atomic orbital electron populations 1.22972 0.80666 1.03103 1.00882 1.88004 1.20585 1.28861 1.94689 1.21772 0.96393 0.84881 0.90162 0.88287 1.28231 1.08991 1.18220 1.04132 1.69255 1.00016 0.91079 0.88766 1.92901 1.83283 1.76230 1.39732 1.27617 1.13677 1.06416 1.08747 1.21155 1.02926 0.94666 0.93722 1.18880 0.91062 0.94406 0.94720 1.00239 1.21381 0.94955 1.35228 1.02342 0.92011 1.25710 0.95140 0.96720 1.01531 1.70016 1.00097 1.48057 1.38269 0.85598 0.78238 0.78020 0.80324 1.18829 1.22062 1.20351 0.92689 0.89710 0.92979 0.84991 0.92301 0.93326 0.85644 0.90548 0.89276 0.93334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 10.81 113.37 1.23 1.77 15 2 O -0.40 -15.86 9.36 -148.98 -1.39 -17.25 15 3 C 0.13 4.63 1.98 30.48 0.06 4.69 15 4 H 0.10 2.87 7.69 -2.39 -0.02 2.85 15 5 C -0.46 -14.99 6.04 72.01 0.44 -14.56 15 6 S 1.31 38.64 13.75 -56.49 -0.78 37.86 15 7 O -0.93 -37.95 18.14 -148.98 -2.70 -40.65 15 8 C -0.43 -15.17 6.44 72.02 0.46 -14.71 15 9 C -0.09 -3.49 4.92 30.49 0.15 -3.34 15 10 C 0.03 1.31 1.66 -11.82 -0.02 1.29 15 11 H -0.02 -1.16 8.08 -2.39 -0.02 -1.18 15 12 C -0.50 -26.04 8.07 25.60 0.21 -25.84 15 13 H 0.06 3.16 7.34 -2.91 -0.02 3.14 15 14 C 0.01 0.33 5.25 84.65 0.44 0.78 15 15 N -0.92 -52.27 11.29 21.45 0.24 -52.03 15 16 Si 0.95 42.62 29.54 68.60 2.03 44.64 15 17 H -0.26 -11.35 7.11 99.48 0.71 -10.64 15 18 H -0.29 -13.44 7.11 99.48 0.71 -12.73 15 19 H -0.28 -12.03 7.11 99.48 0.71 -11.32 15 20 H 0.05 1.19 7.82 -2.39 -0.02 1.18 15 21 H 0.08 2.08 8.14 -2.39 -0.02 2.06 15 22 H 0.05 1.27 8.08 -2.38 -0.02 1.25 15 23 H 0.13 3.46 7.82 -2.39 -0.02 3.44 15 24 H 0.06 2.30 8.14 -2.39 -0.02 2.28 15 25 H 0.05 2.04 8.14 -2.39 -0.02 2.02 15 26 H 0.13 3.77 8.14 -2.39 -0.02 3.75 15 27 H 0.08 3.74 5.81 -2.39 -0.01 3.72 15 28 H 0.09 2.91 8.06 -2.39 -0.02 2.89 15 29 H 0.26 14.00 8.31 -92.72 -0.77 13.23 15 Total: -1.00 -72.90 250.15 1.49 -71.42 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: 1.12 Total: 5.93 kcal Atomic # 6 Polarization: -52.89 SS G_CDS: 2.97 Total: -49.92 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: 0.24 Total: -52.03 kcal Atomic # 8 Polarization: -53.81 SS G_CDS: -4.10 Total: -57.90 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Atomic # 16 Polarization: 38.64 SS G_CDS: -0.78 Total: 37.86 kcal Total: -72.90 1.49 -71.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260757051.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.074 kcal (2) G-P(sol) polarization free energy of solvation -72.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds