Wall clock time and date at job start Mon Mar 30 2020 02:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99835 * 2 1 4 4 H 1.08995 * 109.30894 * 29.75416 * 3 2 1 5 5 C 1.53096 * 109.38979 * 269.99790 * 3 2 1 6 6 S 1.81746 * 108.84030 * 176.82587 * 5 3 2 7 7 O 1.42101 * 109.46791 * 169.26306 * 6 5 3 8 8 C 1.81753 * 102.21879 * 53.26995 * 6 5 3 9 9 C 1.53094 * 108.84031 * 306.73262 * 8 6 5 10 10 C 1.52578 * 109.95980 * 63.02641 * 9 8 6 11 11 H 1.09003 * 109.23251 * 169.00818 * 10 9 8 12 12 C 1.50701 * 109.22541 * 49.64510 * 10 9 8 13 13 H 1.08002 * 119.99968 * 238.77020 * 12 10 9 14 14 C 1.37872 * 120.00076 * 58.76574 * 12 10 9 15 15 N 1.31520 * 119.99746 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00198 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47193 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47190 * 119.99839 * 16 14 12 19 19 H 1.48494 * 109.47135 * 239.99977 * 16 14 12 20 20 H 1.08998 * 109.47100 * 180.02562 * 1 2 3 21 21 H 1.09009 * 109.46930 * 299.99805 * 1 2 3 22 22 H 1.08990 * 109.47230 * 59.99939 * 1 2 3 23 23 H 1.09000 * 109.57575 * 296.63563 * 5 3 2 24 24 H 1.09003 * 109.57344 * 57.01875 * 5 3 2 25 25 H 1.08999 * 109.57593 * 66.53858 * 8 6 5 26 26 H 1.09003 * 109.57042 * 186.79884 * 8 6 5 27 27 H 1.08999 * 109.39202 * 183.17721 * 9 8 6 28 28 H 1.09002 * 109.38932 * 302.97677 * 9 8 6 29 29 H 0.96996 * 119.99699 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3410 1.9980 0.5105 5 6 2.2170 1.7698 -1.4441 6 16 2.8681 3.4666 -1.4276 7 8 3.2977 3.8217 -2.7347 8 6 4.3130 3.3134 -0.3357 9 6 3.8704 2.6753 0.9836 10 6 3.3493 1.2638 0.7304 11 1 3.2221 0.7516 1.6842 12 6 4.3485 0.5089 -0.1078 13 1 4.0536 0.1020 -1.0638 14 6 5.6392 0.3376 0.3456 15 7 5.9985 0.8335 1.5095 16 14 6.8780 -0.5975 -0.6937 17 1 6.2287 -1.0498 -1.9504 18 1 8.0223 0.2912 -1.0193 19 1 7.3677 -1.7780 0.0624 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3633 0.5138 -0.8899 23 1 2.9283 1.1104 -1.9414 24 1 1.2648 1.7492 -1.9742 25 1 5.0652 2.6842 -0.8115 26 1 4.7317 4.3013 -0.1435 27 1 4.7186 2.6308 1.6666 28 1 3.0784 3.2774 1.4290 29 1 6.9067 0.7134 1.8284 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260757055.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:03 Heat of formation + Delta-G solvation = -111.667632 kcal Electronic energy + Delta-G solvation = -13767.633669 eV Core-core repulsion = 11395.504872 eV Total energy + Delta-G solvation = -2372.128797 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.50293 -36.90264 -36.53791 -33.61453 -31.36869 -28.53511 -27.30997 -26.29155 -23.28703 -21.19598 -18.79382 -17.58129 -17.34354 -16.86285 -16.24098 -16.01542 -15.57166 -15.39650 -14.68170 -14.55597 -14.13381 -14.09408 -13.08259 -12.96815 -12.88500 -12.49440 -12.38698 -12.22824 -12.07493 -11.56547 -11.30611 -10.77618 -10.62415 -10.47027 -10.17584 -9.12575 -8.11819 -6.17312 0.94343 1.25415 1.30535 1.38033 1.77289 2.35889 2.93879 3.13988 3.38009 4.09452 4.22011 4.40194 4.49957 4.58417 4.67400 4.74512 4.84726 4.98155 5.12015 5.21930 5.40957 5.53269 5.65086 5.88871 6.09980 6.37103 6.72026 6.91045 7.46789 8.91948 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.024195 B = 0.014588 C = 0.011451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.969754 B = 1918.904205 C = 2444.563702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.408 6.408 3 C 0.128 3.872 4 H 0.102 0.898 5 C -0.450 4.450 6 S 1.299 4.701 7 O -0.936 6.936 8 C -0.409 4.409 9 C -0.076 4.076 10 C 0.023 3.977 11 H 0.019 0.981 12 C -0.509 4.509 13 H 0.038 0.962 14 C 0.024 3.976 15 N -0.903 5.903 16 Si 0.918 3.082 17 H -0.283 1.283 18 H -0.284 1.284 19 H -0.276 1.276 20 H 0.084 0.916 21 H 0.060 0.940 22 H 0.050 0.950 23 H 0.065 0.935 24 H 0.120 0.880 25 H 0.057 0.943 26 H 0.112 0.888 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.370 5.514 1.294 12.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.328 6.328 3 C 0.070 3.930 4 H 0.120 0.880 5 C -0.588 4.588 6 S 1.499 4.501 7 O -0.932 6.932 8 C -0.548 4.548 9 C -0.115 4.115 10 C 0.004 3.996 11 H 0.037 0.963 12 C -0.548 4.548 13 H 0.056 0.944 14 C -0.175 4.175 15 N -0.543 5.543 16 Si 0.746 3.254 17 H -0.209 1.209 18 H -0.210 1.210 19 H -0.202 1.202 20 H 0.102 0.898 21 H 0.078 0.922 22 H 0.068 0.932 23 H 0.083 0.917 24 H 0.138 0.862 25 H 0.076 0.924 26 H 0.130 0.870 27 H 0.089 0.911 28 H 0.108 0.892 29 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.443 6.164 0.891 13.028 hybrid contribution 2.671 -2.354 -1.523 3.872 sum -8.772 3.810 -0.631 9.585 Atomic orbital electron populations 1.23003 0.80634 1.03131 1.01076 1.88047 1.20575 1.29292 1.94847 1.21818 0.95593 0.84375 0.91188 0.87996 1.28058 1.08044 1.18257 1.04414 1.68647 1.00812 0.91416 0.89212 1.92889 1.83686 1.76679 1.39965 1.27325 1.13875 1.05125 1.08513 1.21011 1.01854 0.94449 0.94179 1.18922 0.90727 0.94655 0.95254 0.96311 1.21416 0.95478 1.33775 1.04101 0.94376 1.25382 0.99664 0.96587 0.95884 1.69932 1.18716 1.46326 1.19296 0.86113 0.80301 0.79469 0.79495 1.20868 1.20980 1.20160 0.89780 0.92181 0.93153 0.91659 0.86152 0.92429 0.86986 0.91145 0.89165 0.93180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.81 113.37 1.23 1.67 15 2 O -0.41 -15.59 10.20 -148.98 -1.52 -17.11 15 3 C 0.13 4.55 2.14 30.49 0.07 4.62 15 4 H 0.10 2.56 7.68 -2.39 -0.02 2.54 15 5 C -0.45 -15.98 5.74 72.01 0.41 -15.57 15 6 S 1.30 42.07 13.75 -56.49 -0.78 41.29 15 7 O -0.94 -42.19 18.14 -148.98 -2.70 -44.89 15 8 C -0.41 -15.76 6.14 72.01 0.44 -15.32 15 9 C -0.08 -2.95 4.98 30.49 0.15 -2.80 15 10 C 0.02 1.03 2.20 -11.82 -0.03 1.00 15 11 H 0.02 0.94 8.14 -2.39 -0.02 0.92 15 12 C -0.51 -27.35 6.13 25.60 0.16 -27.19 15 13 H 0.04 2.17 5.99 -2.91 -0.02 2.16 15 14 C 0.02 1.33 4.89 84.65 0.41 1.74 15 15 N -0.90 -50.21 11.35 21.45 0.24 -49.97 15 16 Si 0.92 45.44 29.54 68.60 2.03 47.47 15 17 H -0.28 -14.31 7.11 99.48 0.71 -13.60 15 18 H -0.28 -13.89 7.11 99.48 0.71 -13.18 15 19 H -0.28 -13.28 7.11 99.48 0.71 -12.57 15 20 H 0.08 1.93 8.14 -2.39 -0.02 1.91 15 21 H 0.06 1.23 8.08 -2.38 -0.02 1.21 15 22 H 0.05 1.08 7.82 -2.39 -0.02 1.06 15 23 H 0.06 2.94 5.95 -2.39 -0.01 2.92 15 24 H 0.12 3.49 7.82 -2.39 -0.02 3.47 15 25 H 0.06 2.79 6.53 -2.39 -0.02 2.77 15 26 H 0.11 3.70 8.14 -2.39 -0.02 3.68 15 27 H 0.07 3.24 6.31 -2.39 -0.02 3.22 15 28 H 0.09 2.49 8.05 -2.39 -0.02 2.47 15 29 H 0.26 13.91 8.31 -92.71 -0.77 13.14 15 Total: -1.00 -74.19 244.30 1.25 -72.94 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: 1.14 Total: 2.11 kcal Atomic # 6 Polarization: -54.69 SS G_CDS: 2.84 Total: -51.85 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.24 Total: -49.97 kcal Atomic # 8 Polarization: -57.78 SS G_CDS: -4.22 Total: -62.00 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Atomic # 16 Polarization: 42.07 SS G_CDS: -0.78 Total: 41.29 kcal Total: -74.19 1.25 -72.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260757055.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.728 kcal (2) G-P(sol) polarization free energy of solvation -74.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds