Wall clock time and date at job start Mon Mar 30 2020 02:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36482 * 124.86951 * 2 1 4 4 C 1.34398 * 109.23820 * 180.02562 * 3 2 1 5 5 C 1.46779 * 106.55574 * 0.02562 * 4 3 2 6 6 C 1.46708 * 127.02262 * 179.97438 * 5 4 3 7 7 O 1.34519 * 127.26220 * 134.03403 * 6 5 4 8 8 N 1.20525 * 113.15991 * 179.97438 * 7 6 5 9 9 C 1.29836 * 113.43812 * 0.02562 * 8 7 6 10 10 C 1.41431 * 127.27377 * 314.03184 * 6 5 4 11 11 C 1.40782 * 128.81961 * 0.02562 * 10 6 5 12 12 H 1.08000 * 120.00076 * 7.41026 * 11 10 6 13 13 C 1.39738 * 120.00003 * 187.42188 * 11 10 6 14 14 N 1.31048 * 120.00179 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99861 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47092 * 59.99771 * 15 13 11 17 17 H 1.48501 * 109.46671 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47133 * 299.99203 * 15 13 11 19 19 C 1.35465 * 124.87655 * 180.27909 * 2 1 3 20 20 H 1.09001 * 109.47167 * 90.02572 * 1 2 3 21 21 H 1.09001 * 109.46935 * 210.01682 * 1 2 3 22 22 H 1.08991 * 109.47467 * 330.02029 * 1 2 3 23 23 H 1.08005 * 125.38156 * 0.02643 * 3 2 1 24 24 H 1.08003 * 126.72369 * 179.97438 * 4 3 2 25 25 H 1.07996 * 127.21429 * 180.02562 * 9 8 7 26 26 H 0.96999 * 120.00572 * 180.02562 * 14 13 11 27 27 H 1.08004 * 125.99840 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2453 1.1198 0.0000 4 6 3.5396 0.7576 -0.0006 5 6 3.5633 -0.7100 -0.0016 6 6 4.7487 -1.5743 -0.0030 7 8 4.9689 -2.6560 0.7658 8 7 6.0333 -3.1799 0.5532 9 6 6.7275 -2.5837 -0.3678 10 6 5.9011 -1.4464 -0.8128 11 6 6.1868 -0.4786 -1.7945 12 1 5.5291 0.3679 -1.9259 13 6 7.3214 -0.6133 -2.5991 14 7 8.1196 -1.6403 -2.4395 15 14 7.7001 0.6705 -3.9022 16 1 7.8742 1.9958 -3.2554 17 1 8.9495 0.2995 -4.6140 18 1 6.5780 0.7367 -4.8727 19 6 2.2396 -1.1113 -0.0054 20 1 -0.3633 -0.0005 -1.0277 21 1 -0.3633 -0.8899 0.5141 22 1 -0.3634 0.8901 0.5135 23 1 1.8804 2.1363 0.0004 24 1 4.3948 1.4173 -0.0011 25 1 7.7051 -2.8628 -0.7323 26 1 8.9074 -1.7337 -2.9978 27 1 1.8858 -2.1317 -0.0108 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260800646.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:13 Heat of formation + Delta-G solvation = 77.599407 kcal Electronic energy + Delta-G solvation = -13936.844713 eV Core-core repulsion = 11469.771951 eV Total energy + Delta-G solvation = -2467.072762 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.48137 -41.43008 -36.10884 -33.93386 -33.17582 -31.74459 -29.55880 -27.98495 -26.66485 -23.28554 -22.65711 -20.77556 -20.46571 -19.24429 -18.16049 -17.62563 -16.72925 -16.39385 -15.85025 -15.28975 -14.60934 -14.38090 -13.71053 -13.61007 -13.24962 -13.04534 -12.95876 -12.91648 -12.64125 -12.53060 -11.89530 -11.54112 -11.27543 -10.42580 -9.99524 -9.12670 -8.69296 -8.67233 -6.29596 0.85243 1.40536 1.44099 1.54040 1.60832 1.97732 2.22064 2.22536 2.28543 3.18793 3.34534 4.17943 4.23104 4.29800 4.43517 4.58672 4.65030 4.81474 4.85273 5.11382 5.19229 5.28493 5.52467 5.68030 5.72914 6.16775 6.35118 6.42708 6.70693 6.72502 6.86791 8.17031 8.36292 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.027570 B = 0.009964 C = 0.007642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.357504 B = 2809.476636 C = 3663.229301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.451 5.451 3 C -0.001 4.001 4 C -0.212 4.212 5 C -0.087 4.087 6 C -0.188 4.188 7 O 0.063 5.937 8 N -0.412 5.412 9 C -0.059 4.059 10 C -0.005 4.005 11 C -0.442 4.442 12 H 0.085 0.915 13 C 0.026 3.974 14 N -0.843 5.843 15 Si 1.000 3.000 16 H -0.257 1.257 17 H -0.266 1.266 18 H -0.260 1.260 19 C -0.017 4.017 20 H 0.081 0.919 21 H 0.092 0.908 22 H 0.106 0.894 23 H 0.201 0.799 24 H 0.125 0.875 25 H 0.189 0.811 26 H 0.291 0.709 27 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.823 6.885 -0.241 13.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.127 5.127 3 C -0.130 4.130 4 C -0.237 4.237 5 C -0.095 4.095 6 C -0.250 4.250 7 O -0.006 6.006 8 N -0.117 5.117 9 C -0.237 4.237 10 C -0.011 4.011 11 C -0.472 4.472 12 H 0.103 0.897 13 C -0.187 4.187 14 N -0.471 5.471 15 Si 0.819 3.181 16 H -0.181 1.181 17 H -0.191 1.191 18 H -0.185 1.185 19 C -0.149 4.149 20 H 0.099 0.901 21 H 0.111 0.889 22 H 0.125 0.875 23 H 0.218 0.782 24 H 0.143 0.857 25 H 0.206 0.794 26 H 0.101 0.899 27 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -11.770 5.719 0.421 13.092 hybrid contribution 0.899 0.561 -0.992 1.452 sum -10.870 6.280 -0.571 12.567 Atomic orbital electron populations 1.22310 0.74557 1.05909 1.04276 1.43769 1.07733 1.04689 1.56527 1.21963 0.89315 0.92443 1.09234 1.21972 0.96969 0.92749 1.12010 1.18233 0.88324 0.91713 1.11210 1.21664 1.00129 0.97308 1.05850 1.84188 1.28861 1.35628 1.51957 1.72880 0.96194 1.22385 1.20237 1.26537 1.02571 0.97395 0.97234 1.20410 0.90387 0.94797 0.95476 1.18896 1.07861 1.06824 1.13612 0.89711 1.26909 0.94106 0.98087 0.99606 1.69711 1.12310 1.28351 1.36695 0.84979 0.78412 0.77801 0.76864 1.18080 1.19069 1.18473 1.22291 0.89391 0.92204 1.10997 0.90091 0.88905 0.87541 0.78248 0.85710 0.79414 0.89888 0.80971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.07 11.04 127.77 1.41 2.48 15 2 N -0.45 -12.72 3.11 -545.75 -1.70 -14.42 15 3 C 0.00 -0.03 11.31 83.09 0.94 0.91 15 4 C -0.21 -8.54 10.65 23.63 0.25 -8.29 15 5 C -0.09 -4.01 6.17 -18.81 -0.12 -4.13 15 6 C -0.19 -10.34 7.48 25.27 0.19 -10.15 15 7 O 0.06 3.51 11.10 67.49 0.75 4.26 15 8 N -0.41 -23.44 11.92 -52.67 -0.63 -24.07 15 9 C -0.06 -3.43 11.22 87.42 0.98 -2.45 15 10 C -0.01 -0.32 6.25 -19.44 -0.12 -0.44 15 11 C -0.44 -24.76 9.31 23.26 0.22 -24.55 15 12 H 0.08 4.59 7.38 -2.91 -0.02 4.56 15 13 C 0.03 1.31 5.49 85.17 0.47 1.78 15 14 N -0.84 -44.66 10.70 21.80 0.23 -44.43 15 15 Si 1.00 38.76 29.56 68.60 2.03 40.79 15 16 H -0.26 -9.57 7.11 99.48 0.71 -8.87 15 17 H -0.27 -9.70 7.11 99.48 0.71 -8.99 15 18 H -0.26 -9.84 7.11 99.48 0.71 -9.13 15 19 C -0.02 -0.64 11.44 84.15 0.96 0.33 15 20 H 0.08 1.07 8.14 -2.39 -0.02 1.05 15 21 H 0.09 1.20 8.13 -2.39 -0.02 1.18 15 22 H 0.11 1.08 8.13 -2.39 -0.02 1.06 15 23 H 0.20 3.97 8.06 -2.91 -0.02 3.95 15 24 H 0.12 5.15 8.06 -2.91 -0.02 5.13 15 25 H 0.19 10.93 6.35 -2.91 -0.02 10.91 15 26 H 0.29 13.84 8.30 -92.71 -0.77 13.07 15 27 H 0.17 5.66 8.06 -2.91 -0.02 5.63 15 Total: -1.00 -69.86 248.71 7.05 -62.81 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 1.18 Total: 19.55 kcal Atomic # 6 Polarization: -49.68 SS G_CDS: 5.18 Total: -44.50 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -2.09 Total: -82.91 kcal Atomic # 8 Polarization: 3.51 SS G_CDS: 0.75 Total: 4.26 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.79 kcal Total: -69.86 7.05 -62.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260800646.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.409 kcal (2) G-P(sol) polarization free energy of solvation -69.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds