Wall clock time and date at job start Mon Mar 30 2020 02:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35839 * 125.53266 * 2 1 4 4 C 1.38529 * 108.67138 * 180.26465 * 3 2 1 5 5 C 1.47846 * 126.25720 * 179.75111 * 4 3 2 6 6 C 1.35831 * 126.58612 * 180.02562 * 5 4 3 7 7 N 1.34171 * 107.51253 * 180.02562 * 6 5 4 8 8 C 1.30349 * 108.90500 * 359.97438 * 7 6 5 9 9 O 1.34066 * 109.03826 * 359.73483 * 8 7 6 10 10 C 1.40462 * 107.48700 * 359.75152 * 4 3 2 11 11 C 1.38088 * 125.53752 * 179.83998 * 2 1 3 12 12 C 1.40015 * 126.06156 * 0.02562 * 11 2 1 13 13 H 1.08000 * 119.99510 * 359.71370 * 12 11 2 14 14 C 1.39948 * 120.00186 * 179.71475 * 12 11 2 15 15 N 1.30924 * 119.99781 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00037 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47304 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47234 * 120.00120 * 16 14 12 19 19 H 1.48505 * 109.46783 * 239.99623 * 16 14 12 20 20 H 1.08999 * 109.47119 * 270.15748 * 1 2 3 21 21 H 1.09004 * 109.47277 * 30.16121 * 1 2 3 22 22 H 1.09003 * 109.46529 * 150.16444 * 1 2 3 23 23 H 1.07997 * 125.66454 * 0.02562 * 3 2 1 24 24 H 1.08000 * 126.24109 * 359.96651 * 6 5 4 25 25 H 1.08000 * 125.47906 * 180.02562 * 8 7 6 26 26 H 1.07997 * 126.48360 * 180.02562 * 10 4 3 27 27 H 0.96998 * 119.99963 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2545 1.1054 0.0000 4 6 3.5802 0.7036 -0.0061 5 6 4.7628 1.5910 -0.0133 6 6 6.0649 1.2044 -0.0198 7 7 6.8160 2.3162 -0.0244 8 6 6.0307 3.3565 -0.0216 9 8 4.7557 2.9419 -0.0210 10 6 3.5956 -0.7009 -0.0041 11 6 2.2676 -1.1237 0.0031 12 6 1.8257 -2.4522 0.0063 13 1 0.7677 -2.6693 0.0112 14 6 2.7548 -3.4988 0.0033 15 7 4.0372 -3.2356 -0.0020 16 14 2.1650 -5.2713 0.0068 17 1 0.6804 -5.2990 0.0135 18 1 2.6681 -5.9628 -1.2071 19 1 2.6780 -5.9611 1.2178 20 1 -0.3633 0.0028 1.0277 21 1 -0.3634 0.8886 -0.5163 22 1 -0.3632 -0.8915 -0.5113 23 1 1.9064 2.1278 0.0004 24 1 6.4291 0.1877 -0.0200 25 1 6.3549 4.3867 -0.0245 26 1 4.4708 -1.3335 -0.0072 27 1 4.6812 -3.9609 -0.0045 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260859260.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:24 Heat of formation + Delta-G solvation = 41.702100 kcal Electronic energy + Delta-G solvation = -13910.190609 eV Core-core repulsion = 11441.561223 eV Total energy + Delta-G solvation = -2468.629386 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.97500 -41.03295 -35.55369 -35.41985 -33.90310 -30.92863 -29.97533 -26.74690 -26.43857 -23.42651 -23.33227 -21.00724 -20.40221 -18.97057 -18.04216 -17.34670 -17.17930 -16.17131 -15.63536 -15.32625 -14.98997 -14.42005 -14.12694 -13.77492 -13.43896 -13.13469 -12.82884 -12.73718 -12.27588 -12.24353 -12.00138 -11.67187 -11.47207 -11.21501 -10.44544 -8.83353 -8.48600 -8.39384 -6.17447 0.41584 1.33845 1.43720 1.58470 1.72189 1.97021 2.02820 2.23816 2.66825 2.71595 3.44478 3.57030 4.14726 4.33738 4.40710 4.50547 4.58283 4.74700 4.75716 5.07844 5.23146 5.29436 5.58910 5.74229 5.91522 6.16355 6.24763 6.81599 6.88297 6.91991 7.17470 7.34048 8.52241 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.035890 B = 0.008580 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.969329 B = 3262.615926 C = 4027.437254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.477 5.477 3 C -0.071 4.071 4 C -0.132 4.132 5 C 0.061 3.939 6 C -0.079 4.079 7 N -0.510 5.510 8 C 0.155 3.845 9 O -0.215 6.215 10 C -0.289 4.289 11 C 0.178 3.822 12 C -0.479 4.479 13 H 0.081 0.919 14 C 0.025 3.975 15 N -0.836 5.836 16 Si 0.997 3.003 17 H -0.255 1.255 18 H -0.271 1.271 19 H -0.271 1.271 20 H 0.069 0.931 21 H 0.096 0.904 22 H 0.077 0.923 23 H 0.168 0.832 24 H 0.170 0.830 25 H 0.301 0.699 26 H 0.142 0.858 27 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.523 6.101 -0.093 7.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.159 5.159 3 C -0.199 4.199 4 C -0.141 4.141 5 C 0.007 3.993 6 C -0.217 4.217 7 N -0.238 5.238 8 C -0.070 4.070 9 O -0.103 6.103 10 C -0.312 4.312 11 C 0.070 3.930 12 C -0.514 4.514 13 H 0.099 0.901 14 C -0.187 4.187 15 N -0.465 5.465 16 Si 0.818 3.182 17 H -0.178 1.178 18 H -0.196 1.196 19 H -0.196 1.196 20 H 0.087 0.913 21 H 0.114 0.886 22 H 0.095 0.905 23 H 0.185 0.815 24 H 0.188 0.812 25 H 0.316 0.684 26 H 0.159 0.841 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.066 6.081 -0.102 6.811 hybrid contribution -0.560 -0.768 0.022 0.951 sum -3.626 5.314 -0.080 6.434 Atomic orbital electron populations 1.21922 0.76588 1.04219 1.02956 1.44159 1.06499 1.05378 1.59816 1.21917 0.89218 0.91312 1.17496 1.17476 0.88609 0.92143 1.15828 1.21193 0.95765 0.79420 1.02872 1.23026 0.89129 0.98681 1.10835 1.70199 1.36143 0.98686 1.18806 1.29088 0.75055 1.02064 1.00782 1.84445 1.33714 1.21386 1.70748 1.21680 0.97357 0.90580 1.21534 1.18341 0.88523 0.86729 0.99438 1.18786 0.94872 0.88901 1.48802 0.90113 1.26603 0.94278 1.05472 0.92387 1.69868 1.02934 1.35043 1.38621 0.84924 0.79437 0.75402 0.78429 1.17841 1.19559 1.19589 0.91251 0.88578 0.90455 0.81464 0.81236 0.68447 0.84061 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.77 10.86 127.77 1.39 4.16 15 2 N -0.48 -21.70 3.18 -536.27 -1.70 -23.40 15 3 C -0.07 -3.19 11.44 84.14 0.96 -2.23 15 4 C -0.13 -6.62 6.12 -20.12 -0.12 -6.74 15 5 C 0.06 2.75 7.25 24.26 0.18 2.92 15 6 C -0.08 -3.45 11.65 83.78 0.98 -2.47 15 7 N -0.51 -19.40 11.27 -314.94 -3.55 -22.95 15 8 C 0.16 4.67 13.22 130.46 1.72 6.39 15 9 O -0.22 -8.04 10.80 -8.28 -0.09 -8.13 15 10 C -0.29 -16.19 9.53 23.08 0.22 -15.97 15 11 C 0.18 9.63 6.66 38.86 0.26 9.89 15 12 C -0.48 -25.20 8.96 23.12 0.21 -24.99 15 13 H 0.08 3.91 7.09 -2.91 -0.02 3.89 15 14 C 0.02 1.26 5.50 85.24 0.47 1.73 15 15 N -0.84 -44.94 10.23 21.84 0.22 -44.72 15 16 Si 1.00 38.41 29.56 68.60 2.03 40.44 15 17 H -0.26 -9.28 7.11 99.48 0.71 -8.58 15 18 H -0.27 -10.15 7.11 99.48 0.71 -9.44 15 19 H -0.27 -10.17 7.11 99.48 0.71 -9.46 15 20 H 0.07 2.06 8.14 -2.39 -0.02 2.04 15 21 H 0.10 2.49 8.14 -2.38 -0.02 2.47 15 22 H 0.08 2.51 7.29 -2.39 -0.02 2.49 15 23 H 0.17 6.25 8.06 -2.91 -0.02 6.23 15 24 H 0.17 7.58 8.06 -2.91 -0.02 7.56 15 25 H 0.30 4.55 8.06 -2.91 -0.02 4.53 15 26 H 0.14 8.45 5.65 -2.91 -0.02 8.43 15 27 H 0.28 13.73 8.30 -92.71 -0.77 12.96 15 Total: -1.00 -67.31 246.32 4.35 -62.95 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 1.19 Total: 23.13 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: 6.26 Total: -27.31 kcal Atomic # 7 Polarization: -86.04 SS G_CDS: -5.03 Total: -91.07 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -0.09 Total: -8.13 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.44 kcal Total: -67.31 4.35 -62.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260859260.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.656 kcal (2) G-P(sol) polarization free energy of solvation -67.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds