Wall clock time and date at job start Mon Mar 30 2020 02:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.38098 * 125.81028 * 2 1 4 4 C 1.39662 * 126.10318 * 0.02897 * 3 2 1 5 5 H 1.08001 * 119.99762 * 359.97438 * 4 3 2 6 6 C 1.39982 * 119.99744 * 180.02562 * 4 3 2 7 7 N 1.30918 * 120.00450 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99656 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47312 * 90.00114 * 8 6 4 10 10 H 1.48504 * 109.46760 * 209.99894 * 8 6 4 11 11 H 1.48499 * 109.47486 * 329.99577 * 8 6 4 12 12 C 1.40005 * 107.79190 * 180.02562 * 3 2 1 13 13 C 1.38541 * 107.49877 * 359.75316 * 12 3 2 14 14 C 1.37208 * 125.81221 * 180.02562 * 2 1 3 15 15 C 1.47307 * 125.77740 * 359.94664 * 14 2 1 16 16 C 1.47151 * 128.56674 * 348.31578 * 15 14 2 17 17 N 1.30027 * 105.38130 * 179.72638 * 16 15 14 18 18 O 1.20653 * 112.36489 * 0.24175 * 17 16 15 19 19 C 1.33807 * 113.10569 * 359.97438 * 18 17 16 20 20 H 1.08996 * 109.47648 * 264.37085 * 1 2 3 21 21 H 1.08993 * 109.47450 * 24.37812 * 1 2 3 22 22 H 1.09004 * 109.46824 * 144.37421 * 1 2 3 23 23 H 0.96998 * 120.00202 * 180.02562 * 7 6 4 24 24 H 1.07998 * 126.25233 * 180.02562 * 12 3 2 25 25 H 1.08002 * 126.05902 * 180.23968 * 13 12 3 26 26 H 1.08002 * 127.30751 * 359.97438 * 16 15 14 27 27 H 1.07997 * 126.86434 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2730 1.1199 0.0000 4 6 1.8394 2.4475 0.0006 5 1 0.7826 2.6704 0.0007 6 6 2.7745 3.4892 0.0000 7 7 4.0555 3.2190 -0.0007 8 14 2.1946 5.2649 0.0014 9 1 2.0425 5.7348 1.4019 10 1 3.1928 6.1121 -0.6994 11 1 0.8876 5.3594 -0.6971 12 6 3.6044 0.6868 -0.0006 13 6 3.5918 -0.6985 0.0047 14 6 2.2678 -1.1127 -0.0005 15 6 1.8026 -2.5104 0.0000 16 6 0.4440 -3.0249 0.2341 17 7 0.5409 -4.3169 0.1246 18 8 1.6674 -4.6738 -0.1194 19 6 2.5311 -3.6564 -0.2165 20 1 -0.3634 -0.1008 1.0226 21 1 -0.3634 0.9360 -0.4241 22 1 -0.3633 -0.8354 -0.5986 23 1 4.7035 3.9408 -0.0007 24 1 4.4811 1.3175 -0.0004 25 1 4.4591 -1.3421 0.0094 26 1 -0.4457 -2.4509 0.4472 27 1 3.5883 -3.7219 -0.4270 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260859299.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:19 Heat of formation + Delta-G solvation = 98.616234 kcal Electronic energy + Delta-G solvation = -13981.547209 eV Core-core repulsion = 11515.385804 eV Total energy + Delta-G solvation = -2466.161404 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.03116 -39.17511 -33.93250 -32.87677 -31.74047 -30.98233 -28.34659 -25.37363 -24.95789 -22.25228 -21.53534 -19.30380 -18.35387 -17.10925 -16.92827 -16.87844 -15.54092 -14.98598 -14.02221 -13.88868 -12.82726 -12.63836 -12.36755 -12.09282 -11.71756 -11.55384 -11.20509 -11.11942 -11.01717 -10.52112 -10.20984 -9.86616 -9.79039 -9.51183 -8.95900 -7.24698 -6.69455 -6.68687 -4.25164 2.00073 2.48987 2.95138 3.02151 3.05294 3.81625 3.85663 3.88062 4.29420 4.53924 4.87750 5.18552 5.28531 5.63145 5.82037 5.95111 6.01429 6.11460 6.24030 6.65046 6.68065 7.00796 7.12802 7.58955 7.76749 8.06676 8.17205 8.69184 8.80724 8.86482 9.01343 9.18152 10.18037 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.065954 B = 0.007231 C = 0.006548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.436774 B = 3871.024556 C = 4274.803215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.480 5.480 3 C 0.238 3.762 4 C -0.445 4.445 5 H 0.073 0.927 6 C 0.074 3.926 7 N -0.790 5.790 8 Si 0.925 3.075 9 H -0.269 1.269 10 H -0.276 1.276 11 H -0.264 1.264 12 C -0.280 4.280 13 C -0.128 4.128 14 C -0.073 4.073 15 C -0.063 4.063 16 C -0.042 4.042 17 N -0.369 5.369 18 O 0.083 5.917 19 C -0.129 4.129 20 H 0.048 0.952 21 H 0.075 0.925 22 H 0.059 0.941 23 H 0.279 0.721 24 H 0.162 0.838 25 H 0.108 0.892 26 H 0.183 0.817 27 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.528 -3.046 -0.297 3.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.166 5.166 3 C 0.127 3.873 4 C -0.480 4.480 5 H 0.091 0.909 6 C -0.144 4.144 7 N -0.417 5.417 8 Si 0.749 3.251 9 H -0.195 1.195 10 H -0.200 1.200 11 H -0.188 1.188 12 C -0.302 4.302 13 C -0.154 4.154 14 C -0.176 4.176 15 C -0.067 4.067 16 C -0.222 4.222 17 N -0.072 5.072 18 O 0.016 5.984 19 C -0.208 4.208 20 H 0.067 0.933 21 H 0.093 0.907 22 H 0.078 0.922 23 H 0.090 0.910 24 H 0.179 0.821 25 H 0.126 0.874 26 H 0.200 0.800 27 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -3.498 -4.017 -0.204 5.330 hybrid contribution 0.036 1.640 0.035 1.641 sum -3.463 -2.376 -0.169 4.203 Atomic orbital electron populations 1.21616 0.80512 1.02415 1.00681 1.43779 1.03654 1.05427 1.63700 1.18284 0.88600 0.85289 0.95158 1.18493 0.94378 0.88701 1.46386 0.90855 1.25708 0.94330 1.01543 0.92836 1.69754 1.01681 1.34155 1.36093 0.86045 0.79377 0.80513 0.79148 1.19458 1.20050 1.18813 1.21872 0.96939 0.92307 1.19059 1.20870 0.92445 0.96234 1.05822 1.17144 0.89741 0.82206 1.28485 1.20430 0.91188 0.93090 1.02027 1.26311 0.99180 0.90357 1.06382 1.73420 1.00511 1.16085 1.17207 1.84400 1.12494 1.34694 1.66848 1.25468 0.97606 0.85315 1.12411 0.93305 0.90670 0.92203 0.90994 0.82146 0.87404 0.80032 0.77267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.69 9.72 59.85 0.58 2.27 15 2 N -0.48 -11.25 3.22 -117.02 -0.38 -11.63 15 3 C 0.24 6.21 6.67 -83.85 -0.56 5.65 15 4 C -0.44 -11.28 8.96 -38.40 -0.34 -11.62 15 5 H 0.07 1.74 6.98 -52.49 -0.37 1.38 15 6 C 0.07 1.78 5.50 -17.29 -0.10 1.69 15 7 N -0.79 -19.66 10.22 55.55 0.57 -19.09 15 8 Si 0.92 17.99 29.56 -169.99 -5.03 12.96 15 9 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 10 H -0.28 -5.25 7.11 56.52 0.40 -4.85 15 11 H -0.26 -5.06 7.11 56.52 0.40 -4.66 15 12 C -0.28 -7.35 9.74 -38.81 -0.38 -7.72 15 13 C -0.13 -3.03 10.66 -39.29 -0.42 -3.45 15 14 C -0.07 -1.69 6.90 -81.59 -0.56 -2.25 15 15 C -0.06 -1.25 6.37 -102.86 -0.66 -1.91 15 16 C -0.04 -0.77 11.07 -14.70 -0.16 -0.94 15 17 N -0.37 -6.83 12.01 31.84 0.38 -6.45 15 18 O 0.08 1.46 11.08 17.86 0.20 1.66 15 19 C -0.13 -2.22 12.21 30.47 0.37 -1.85 15 20 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 21 H 0.07 1.34 7.09 -51.93 -0.37 0.97 15 22 H 0.06 1.00 6.22 -51.93 -0.32 0.67 15 23 H 0.28 6.28 8.30 -40.82 -0.34 5.95 15 24 H 0.16 4.35 5.64 -52.49 -0.30 4.05 15 25 H 0.11 2.23 8.06 -52.49 -0.42 1.81 15 26 H 0.18 2.92 6.41 -52.49 -0.34 2.59 15 27 H 0.21 2.88 8.06 -52.49 -0.42 2.46 15 LS Contribution 240.09 15.07 3.62 3.62 Total: -1.00 -28.14 240.09 -4.95 -33.09 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -2.09 Total: 5.97 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -2.22 Total: -20.13 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.57 Total: -37.17 kcal Atomic # 8 Polarization: 1.46 SS G_CDS: 0.20 Total: 1.66 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -28.14 -4.95 -33.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260859299.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.706 kcal (2) G-P(sol) polarization free energy of solvation -28.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds