Wall clock time and date at job start Mon Mar 30 2020 02:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.38098 * 125.81028 * 2 1 4 4 C 1.39662 * 126.10318 * 0.02897 * 3 2 1 5 5 H 1.08001 * 119.99762 * 359.97438 * 4 3 2 6 6 C 1.39982 * 119.99744 * 180.02562 * 4 3 2 7 7 N 1.30918 * 120.00450 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99656 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47312 * 90.00114 * 8 6 4 10 10 H 1.48504 * 109.46760 * 209.99894 * 8 6 4 11 11 H 1.48499 * 109.47486 * 329.99577 * 8 6 4 12 12 C 1.40005 * 107.79190 * 180.02562 * 3 2 1 13 13 C 1.38541 * 107.49877 * 359.75316 * 12 3 2 14 14 C 1.37208 * 125.81221 * 180.02562 * 2 1 3 15 15 C 1.47307 * 125.77740 * 359.94664 * 14 2 1 16 16 C 1.47151 * 128.56674 * 348.31578 * 15 14 2 17 17 N 1.30027 * 105.38130 * 179.72638 * 16 15 14 18 18 O 1.20653 * 112.36489 * 0.24175 * 17 16 15 19 19 C 1.33807 * 113.10569 * 359.97438 * 18 17 16 20 20 H 1.08996 * 109.47648 * 264.37085 * 1 2 3 21 21 H 1.08993 * 109.47450 * 24.37812 * 1 2 3 22 22 H 1.09004 * 109.46824 * 144.37421 * 1 2 3 23 23 H 0.96998 * 120.00202 * 180.02562 * 7 6 4 24 24 H 1.07998 * 126.25233 * 180.02562 * 12 3 2 25 25 H 1.08002 * 126.05902 * 180.23968 * 13 12 3 26 26 H 1.08002 * 127.30751 * 359.97438 * 16 15 14 27 27 H 1.07997 * 126.86434 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2730 1.1199 0.0000 4 6 1.8394 2.4475 0.0006 5 1 0.7826 2.6704 0.0007 6 6 2.7745 3.4892 0.0000 7 7 4.0555 3.2190 -0.0007 8 14 2.1946 5.2649 0.0014 9 1 2.0425 5.7348 1.4019 10 1 3.1928 6.1121 -0.6994 11 1 0.8876 5.3594 -0.6971 12 6 3.6044 0.6868 -0.0006 13 6 3.5918 -0.6985 0.0047 14 6 2.2678 -1.1127 -0.0005 15 6 1.8026 -2.5104 0.0000 16 6 0.4440 -3.0249 0.2341 17 7 0.5409 -4.3169 0.1246 18 8 1.6674 -4.6738 -0.1194 19 6 2.5311 -3.6564 -0.2165 20 1 -0.3634 -0.1008 1.0226 21 1 -0.3634 0.9360 -0.4241 22 1 -0.3633 -0.8354 -0.5986 23 1 4.7035 3.9408 -0.0007 24 1 4.4811 1.3175 -0.0004 25 1 4.4591 -1.3421 0.0094 26 1 -0.4457 -2.4509 0.4472 27 1 3.5883 -3.7219 -0.4270 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260859299.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:19 Heat of formation + Delta-G solvation = 82.581584 kcal Electronic energy + Delta-G solvation = -13982.242523 eV Core-core repulsion = 11515.385804 eV Total energy + Delta-G solvation = -2466.856719 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.52618 -40.93608 -35.66608 -34.42971 -33.37359 -32.55721 -30.12353 -27.02365 -26.66101 -23.80878 -23.09384 -21.10987 -19.98355 -18.75860 -18.55353 -18.35868 -17.27892 -16.55080 -15.64942 -15.45646 -14.38734 -14.20331 -13.99439 -13.71217 -13.47943 -13.15838 -12.76787 -12.71021 -12.57025 -12.08940 -11.91513 -11.59859 -11.44823 -11.08741 -10.55610 -9.03479 -8.50892 -8.43974 -6.10828 0.51899 0.97723 1.41891 1.43074 1.56726 2.13781 2.21354 2.43003 2.63534 2.75411 3.42647 3.44658 3.71065 4.16297 4.32866 4.45617 4.53048 4.65657 4.87247 4.95984 5.11022 5.22690 5.33689 5.80717 5.95409 6.21269 6.34316 6.85023 6.98747 7.21168 7.37253 7.42069 8.45689 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.065954 B = 0.007231 C = 0.006548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.436774 B = 3871.024556 C = 4274.803215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.486 5.486 3 C 0.200 3.800 4 C -0.477 4.477 5 H 0.079 0.921 6 C 0.029 3.971 7 N -0.825 5.825 8 Si 0.998 3.002 9 H -0.265 1.265 10 H -0.269 1.269 11 H -0.258 1.258 12 C -0.318 4.318 13 C -0.154 4.154 14 C -0.057 4.057 15 C -0.108 4.108 16 C -0.032 4.032 17 N -0.379 5.379 18 O 0.089 5.911 19 C -0.080 4.080 20 H 0.066 0.934 21 H 0.078 0.922 22 H 0.081 0.919 23 H 0.284 0.716 24 H 0.142 0.858 25 H 0.131 0.869 26 H 0.202 0.798 27 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.593 -4.205 -0.370 5.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.171 5.171 3 C 0.088 3.912 4 C -0.511 4.511 5 H 0.097 0.903 6 C -0.185 4.185 7 N -0.453 5.453 8 Si 0.819 3.181 9 H -0.190 1.190 10 H -0.194 1.194 11 H -0.182 1.182 12 C -0.341 4.341 13 C -0.180 4.180 14 C -0.161 4.161 15 C -0.113 4.113 16 C -0.212 4.212 17 N -0.083 5.083 18 O 0.024 5.976 19 C -0.159 4.159 20 H 0.084 0.916 21 H 0.096 0.904 22 H 0.099 0.901 23 H 0.094 0.906 24 H 0.159 0.841 25 H 0.149 0.851 26 H 0.219 0.781 27 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -4.588 -5.202 -0.277 6.942 hybrid contribution 0.335 1.645 0.049 1.679 sum -4.253 -3.557 -0.228 5.550 Atomic orbital electron populations 1.21872 0.78060 1.03549 1.02230 1.44088 1.05363 1.04913 1.62726 1.18550 0.89237 0.86390 0.96976 1.18791 0.94975 0.89221 1.48134 0.90307 1.26658 0.94240 1.05613 0.92023 1.69864 1.02804 1.35526 1.37103 0.84956 0.78993 0.74950 0.79226 1.18971 1.19404 1.18189 1.21833 0.96896 0.93630 1.21701 1.21090 0.93902 0.95573 1.07399 1.17545 0.89623 0.83452 1.25503 1.20457 0.92835 0.92388 1.05636 1.26622 0.99281 0.90311 1.05020 1.73456 1.00816 1.15995 1.18009 1.84445 1.12408 1.34578 1.66205 1.26242 0.98674 0.84213 1.06816 0.91583 0.90372 0.90092 0.90550 0.84121 0.85112 0.78084 0.73627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.03 9.72 127.77 1.24 4.27 15 2 N -0.49 -22.70 3.22 -524.13 -1.69 -24.38 15 3 C 0.20 10.75 6.67 38.93 0.26 11.01 15 4 C -0.48 -24.87 8.96 23.04 0.21 -24.66 15 5 H 0.08 3.82 6.98 -2.91 -0.02 3.80 15 6 C 0.03 1.42 5.50 85.25 0.47 1.89 15 7 N -0.83 -42.85 10.22 21.84 0.22 -42.62 15 8 Si 1.00 37.32 29.56 68.60 2.03 39.34 15 9 H -0.26 -9.60 7.11 99.48 0.71 -8.90 15 10 H -0.27 -9.67 7.11 99.48 0.71 -8.96 15 11 H -0.26 -9.27 7.11 99.48 0.71 -8.57 15 12 C -0.32 -17.39 9.74 22.77 0.22 -17.17 15 13 C -0.15 -7.33 10.66 22.46 0.24 -7.10 15 14 C -0.06 -2.58 6.90 40.81 0.28 -2.29 15 15 C -0.11 -4.02 6.37 -18.72 -0.12 -4.14 15 16 C -0.03 -1.08 11.07 87.30 0.97 -0.11 15 17 N -0.38 -12.66 12.01 -54.01 -0.65 -13.31 15 18 O 0.09 2.76 11.08 74.14 0.82 3.58 15 19 C -0.08 -2.43 12.21 67.65 0.83 -1.60 15 20 H 0.07 2.12 8.14 -2.39 -0.02 2.10 15 21 H 0.08 2.72 7.09 -2.39 -0.02 2.71 15 22 H 0.08 2.51 6.22 -2.38 -0.01 2.49 15 23 H 0.28 13.31 8.30 -92.71 -0.77 12.54 15 24 H 0.14 8.11 5.64 -2.91 -0.02 8.10 15 25 H 0.13 5.32 8.06 -2.91 -0.02 5.30 15 26 H 0.20 5.76 6.41 -2.91 -0.02 5.74 15 27 H 0.25 5.51 8.06 -2.91 -0.02 5.48 15 Total: -1.00 -62.00 240.09 6.53 -55.47 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 1.20 Total: 21.83 kcal Atomic # 6 Polarization: -44.50 SS G_CDS: 4.59 Total: -39.91 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -2.11 Total: -80.32 kcal Atomic # 8 Polarization: 2.76 SS G_CDS: 0.82 Total: 3.58 kcal Atomic # 14 Polarization: 37.32 SS G_CDS: 2.03 Total: 39.34 kcal Total: -62.00 6.53 -55.47 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260859299.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.052 kcal (2) G-P(sol) polarization free energy of solvation -61.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds