Wall clock time and date at job start Mon Mar 30 2020 02:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36152 * 125.71171 * 2 1 4 4 C 1.35194 * 108.56081 * 180.26379 * 3 2 1 5 5 C 1.40227 * 107.75223 * 359.75364 * 4 3 2 6 6 C 1.36585 * 107.30514 * 359.97438 * 5 4 3 7 7 C 1.47141 * 126.09801 * 179.97438 * 6 5 4 8 8 C 1.36741 * 126.71387 * 5.33477 * 7 6 5 9 9 C 1.42579 * 103.80275 * 180.12346 * 8 7 6 10 10 C 1.41824 * 126.95093 * 179.85422 * 9 8 7 11 11 H 1.08002 * 120.00483 * 359.71609 * 10 9 8 12 12 C 1.39956 * 119.99767 * 179.43239 * 10 9 8 13 13 N 1.30764 * 120.00122 * 0.28046 * 12 10 9 14 14 Si 1.86803 * 119.99995 * 180.27468 * 12 10 9 15 15 H 1.48499 * 109.46996 * 60.00845 * 14 12 10 16 16 H 1.48504 * 109.47036 * 180.02562 * 14 12 10 17 17 H 1.48487 * 109.47253 * 300.00332 * 14 12 10 18 18 N 1.32214 * 106.09074 * 359.59426 * 9 8 7 19 19 O 1.20863 * 111.57853 * 0.26277 * 18 9 8 20 20 H 1.08997 * 109.47292 * 270.15566 * 1 2 3 21 21 H 1.09000 * 109.46949 * 30.15568 * 1 2 3 22 22 H 1.09004 * 109.47287 * 150.15767 * 1 2 3 23 23 H 1.08005 * 125.71922 * 0.03661 * 3 2 1 24 24 H 1.08002 * 126.12790 * 179.71716 * 4 3 2 25 25 H 1.08001 * 126.34755 * 179.97438 * 5 4 3 26 26 H 1.08002 * 128.09378 * 359.97438 * 8 7 6 27 27 H 0.97005 * 120.00083 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2597 1.1055 0.0000 4 6 3.5515 0.7068 -0.0059 5 6 3.5663 -0.6954 -0.0040 6 6 2.2666 -1.1153 0.0037 7 6 1.8073 -2.5132 0.0077 8 6 2.5895 -3.6304 0.1063 9 6 1.6544 -4.7057 0.0581 10 6 1.9458 -6.0923 0.1200 11 1 2.9692 -6.4257 0.2092 12 6 0.9066 -7.0285 0.0713 13 7 -0.3325 -6.6250 -0.0367 14 14 1.2897 -8.8547 0.1606 15 1 1.9818 -9.1532 1.4400 16 1 0.0251 -9.6298 0.0888 17 1 2.1666 -9.2326 -0.9766 18 7 0.4604 -4.1484 -0.0503 19 8 0.5337 -2.9423 -0.0789 20 1 -0.3634 0.0028 1.0276 21 1 -0.3633 0.8886 -0.5163 22 1 -0.3634 -0.8914 -0.5114 23 1 1.9158 2.1293 0.0006 24 1 4.4172 1.3526 -0.0117 25 1 4.4428 -1.3263 -0.0079 26 1 3.6643 -3.6854 0.1969 27 1 -1.0527 -7.2739 -0.0708 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260880567.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:16 Heat of formation + Delta-G solvation = 77.968577 kcal Electronic energy + Delta-G solvation = -13925.348980 eV Core-core repulsion = 11458.292226 eV Total energy + Delta-G solvation = -2467.056754 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.65694 -41.89693 -36.01021 -34.06190 -33.47604 -32.61832 -28.76041 -28.20926 -27.27965 -23.51862 -23.04770 -21.11025 -20.94688 -18.97729 -17.94950 -17.72791 -16.90578 -16.36497 -16.05392 -15.42645 -14.48502 -14.35941 -14.05925 -13.75885 -13.28416 -13.14703 -13.00654 -12.88282 -12.86882 -12.69829 -11.93629 -11.60003 -11.10352 -10.66165 -10.28610 -9.57795 -8.54724 -8.53609 -6.62068 0.43564 1.35514 1.37933 1.52461 1.78113 2.01688 2.06804 2.23408 2.30153 2.75141 3.31273 3.95519 4.05146 4.31721 4.37847 4.46352 4.64464 4.68119 4.79869 4.84794 5.00447 5.25473 5.33756 5.38669 5.51743 6.00874 6.16327 6.24506 6.49302 6.56786 6.86223 8.41777 8.52946 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.067767 B = 0.006934 C = 0.006314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.079048 B = 4037.080864 C = 4433.465502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.448 5.448 3 C 0.010 3.990 4 C -0.212 4.212 5 C -0.169 4.169 6 C 0.047 3.953 7 C -0.002 4.002 8 C -0.274 4.274 9 C 0.133 3.867 10 C -0.485 4.485 11 H 0.096 0.904 12 C 0.019 3.981 13 N -0.821 5.821 14 Si 1.000 3.000 15 H -0.256 1.256 16 H -0.272 1.272 17 H -0.256 1.256 18 N -0.446 5.446 19 O 0.034 5.966 20 H 0.079 0.921 21 H 0.123 0.877 22 H 0.065 0.935 23 H 0.209 0.791 24 H 0.169 0.831 25 H 0.142 0.858 26 H 0.166 0.834 27 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.920 11.888 0.186 12.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.123 5.123 3 C -0.122 4.122 4 C -0.236 4.236 5 C -0.195 4.195 6 C -0.065 4.065 7 C -0.066 4.066 8 C -0.296 4.296 9 C -0.012 4.012 10 C -0.522 4.522 11 H 0.114 0.886 12 C -0.197 4.197 13 N -0.450 5.450 14 Si 0.819 3.181 15 H -0.180 1.180 16 H -0.196 1.196 17 H -0.180 1.180 18 N -0.173 5.173 19 O -0.015 6.015 20 H 0.097 0.903 21 H 0.141 0.859 22 H 0.083 0.917 23 H 0.226 0.774 24 H 0.187 0.813 25 H 0.160 0.840 26 H 0.184 0.816 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.053 11.505 0.083 11.687 hybrid contribution 0.682 -0.986 0.099 1.203 sum 2.735 10.519 0.181 10.870 Atomic orbital electron populations 1.22275 0.75732 1.05288 1.04186 1.44361 1.07353 1.05278 1.55338 1.22642 0.90125 0.92171 1.07248 1.21119 0.97455 0.93542 1.11449 1.21129 0.93599 0.96682 1.08065 1.17691 0.91162 0.81891 1.15713 1.21832 0.86331 0.92983 1.05485 1.22612 1.00800 0.90468 1.15751 1.20927 0.87118 0.96564 0.96569 1.19156 0.95619 0.88072 1.49399 0.88607 1.26968 0.93890 1.06825 0.91973 1.70001 1.00946 1.38203 1.35854 0.85005 0.78570 0.74289 0.80225 1.17975 1.19635 1.17966 1.74747 1.21859 0.87229 1.33510 1.84782 1.26491 1.19181 1.71036 0.90264 0.85851 0.91658 0.77415 0.81339 0.83992 0.81614 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.71 10.78 127.77 1.38 3.09 15 2 N -0.45 -13.84 3.17 -534.89 -1.70 -15.53 15 3 C 0.01 0.23 11.42 83.32 0.95 1.18 15 4 C -0.21 -5.37 10.83 22.05 0.24 -5.13 15 5 C -0.17 -5.58 10.58 22.37 0.24 -5.35 15 6 C 0.05 1.81 6.85 40.23 0.28 2.08 15 7 C 0.00 -0.09 7.16 24.26 0.17 0.09 15 8 C -0.27 -14.01 10.88 23.00 0.25 -13.76 15 9 C 0.13 7.96 6.81 41.06 0.28 8.24 15 10 C -0.48 -28.27 9.45 23.57 0.22 -28.04 15 11 H 0.10 5.12 7.85 -2.91 -0.02 5.09 15 12 C 0.02 1.04 5.50 85.27 0.47 1.51 15 13 N -0.82 -48.77 12.01 21.82 0.26 -48.50 15 14 Si 1.00 41.00 29.56 68.60 2.03 43.03 15 15 H -0.26 -9.96 7.11 99.48 0.71 -9.25 15 16 H -0.27 -10.66 7.11 99.48 0.71 -9.95 15 17 H -0.26 -9.95 7.11 99.48 0.71 -9.25 15 18 N -0.45 -27.46 10.42 -51.90 -0.54 -28.00 15 19 O 0.03 1.87 9.35 65.58 0.61 2.48 15 20 H 0.08 1.92 8.14 -2.39 -0.02 1.90 15 21 H 0.12 2.06 8.14 -2.39 -0.02 2.04 15 22 H 0.06 2.10 6.45 -2.38 -0.02 2.09 15 23 H 0.21 2.78 8.06 -2.91 -0.02 2.76 15 24 H 0.17 3.09 8.06 -2.91 -0.02 3.07 15 25 H 0.14 4.41 8.06 -2.91 -0.02 4.38 15 26 H 0.17 7.36 8.06 -2.91 -0.02 7.34 15 27 H 0.28 15.16 8.29 -92.70 -0.77 14.39 15 Total: -1.00 -74.33 247.18 6.32 -68.01 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 1.18 Total: 14.60 kcal Atomic # 6 Polarization: -40.56 SS G_CDS: 4.47 Total: -36.09 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -1.97 Total: -92.04 kcal Atomic # 8 Polarization: 1.87 SS G_CDS: 0.61 Total: 2.48 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -74.33 6.32 -68.01 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260880567.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.982 kcal (2) G-P(sol) polarization free energy of solvation -74.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds