Wall clock time and date at job start Mon Mar 30 2020 02:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.32205 * 118.77133 * 2 1 4 4 C 1.32249 * 121.39608 * 180.02562 * 3 2 1 5 5 C 1.39591 * 119.11352 * 359.97438 * 4 3 2 6 6 C 1.42542 * 117.88023 * 0.02562 * 5 4 3 7 7 C 1.41153 * 120.79977 * 179.97438 * 6 5 4 8 8 H 1.07999 * 120.00184 * 0.02562 * 7 6 5 9 9 C 1.40395 * 119.99610 * 180.02562 * 7 6 5 10 10 N 1.30515 * 120.00503 * 359.72741 * 9 7 6 11 11 Si 1.86809 * 119.99874 * 180.02562 * 9 7 6 12 12 H 1.48491 * 109.47213 * 89.99946 * 11 9 7 13 13 H 1.48501 * 109.46949 * 210.00444 * 11 9 7 14 14 H 1.48500 * 109.46668 * 330.00057 * 11 9 7 15 15 N 1.31338 * 118.77456 * 180.31305 * 2 1 3 16 16 C 1.46431 * 110.88947 * 180.02562 * 5 4 3 17 17 O 1.21307 * 125.95099 * 180.02562 * 16 5 4 18 18 C 1.51050 * 108.09634 * 359.97438 * 16 5 4 19 19 C 1.50820 * 131.40285 * 179.97438 * 4 3 2 20 20 H 1.08999 * 109.47329 * 90.00556 * 1 2 3 21 21 H 1.09004 * 109.47296 * 210.00530 * 1 2 3 22 22 H 1.09001 * 109.47205 * 330.00294 * 1 2 3 23 23 H 0.97000 * 120.00524 * 180.02562 * 10 9 7 24 24 H 1.08997 * 110.27881 * 241.04468 * 18 16 5 25 25 H 1.08997 * 110.27540 * 118.95798 * 18 16 5 26 26 H 1.09001 * 110.10373 * 299.19161 * 19 4 3 27 27 H 1.08997 * 110.10498 * 60.74748 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1432 1.1588 0.0000 4 6 3.4643 1.2194 -0.0005 5 6 4.1987 0.0322 -0.0005 6 6 3.4777 -1.1974 -0.0005 7 6 4.1582 -2.4342 -0.0011 8 1 5.2379 -2.4564 -0.0010 9 6 3.4312 -3.6352 -0.0016 10 7 2.1263 -3.6084 0.0038 11 14 4.3316 -5.2720 -0.0016 12 1 4.5696 -5.7060 1.3984 13 1 3.5081 -6.2899 -0.7023 14 1 5.6328 -5.1210 -0.7011 15 7 2.1391 -1.1512 -0.0063 16 6 5.6368 0.3078 -0.0005 17 8 6.5211 -0.5226 -0.0009 18 6 5.8273 1.8063 -0.0011 19 6 4.4089 2.3952 -0.0011 20 1 -0.3634 -0.0001 -1.0276 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3634 0.8900 0.5138 23 1 1.6240 -4.4382 0.0038 24 1 6.3661 2.1182 -0.8958 25 1 6.3660 2.1189 0.8934 26 1 4.2541 2.9997 -0.8948 27 1 4.2540 3.0007 0.8918 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261062385.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:39 Heat of formation + Delta-G solvation = -8.749127 kcal Electronic energy + Delta-G solvation = -14249.739170 eV Core-core repulsion = 11778.922054 eV Total energy + Delta-G solvation = -2470.817116 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.73153 -37.55979 -34.93318 -34.07664 -31.47276 -30.33165 -27.48826 -26.37300 -25.04952 -21.79417 -20.50859 -18.79477 -17.57098 -16.32458 -15.17049 -15.15618 -14.79831 -14.07360 -13.51125 -13.19704 -12.68954 -12.60275 -12.06543 -11.79813 -11.75733 -11.40700 -11.37714 -11.19561 -10.75000 -10.72055 -10.37089 -10.02450 -9.81239 -8.71165 -8.24960 -7.99769 -7.63801 -6.72023 -5.02286 1.84720 2.70654 2.96331 3.02618 3.13528 3.60820 3.75913 4.49203 4.68933 5.25438 5.33732 5.38327 5.58653 5.74326 5.91966 6.05633 6.18282 6.31905 6.40454 6.51245 6.61649 6.67420 6.82380 6.87987 7.02836 7.66732 8.00589 8.23056 8.56054 8.73963 8.84556 9.84994 9.99731 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.025621 B = 0.013194 C = 0.008780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.589599 B = 2121.642329 C = 3188.386678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.327 3.673 3 N -0.620 5.620 4 C 0.217 3.783 5 C -0.409 4.409 6 C 0.288 3.712 7 C -0.371 4.371 8 H 0.109 0.891 9 C 0.060 3.940 10 N -0.687 5.687 11 Si 0.918 3.082 12 H -0.263 1.263 13 H -0.272 1.272 14 H -0.254 1.254 15 N -0.510 5.510 16 C 0.410 3.590 17 O -0.487 6.487 18 C -0.168 4.168 19 C -0.063 4.063 20 H 0.067 0.933 21 H 0.075 0.925 22 H 0.066 0.934 23 H 0.282 0.718 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.293 3.941 0.018 3.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.056 3.944 3 N -0.345 5.345 4 C 0.069 3.931 5 C -0.420 4.420 6 C 0.164 3.836 7 C -0.401 4.401 8 H 0.127 0.873 9 C -0.170 4.170 10 N -0.306 5.306 11 Si 0.741 3.259 12 H -0.188 1.188 13 H -0.196 1.196 14 H -0.178 1.178 15 N -0.229 5.229 16 C 0.293 3.707 17 O -0.367 6.367 18 C -0.206 4.206 19 C -0.101 4.101 20 H 0.086 0.914 21 H 0.094 0.906 22 H 0.085 0.915 23 H 0.094 0.906 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.103 0.897 27 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.446 3.281 0.012 3.311 hybrid contribution 1.086 -0.569 -0.014 1.226 sum 0.641 2.712 -0.003 2.787 Atomic orbital electron populations 1.20298 0.88316 1.02190 1.02037 1.22969 0.96916 0.84490 0.89988 1.67289 1.08393 1.30616 1.28227 1.21460 0.90110 0.94245 0.87290 1.21803 0.96216 0.96669 1.27316 1.18541 0.87198 0.91097 0.86739 1.20317 0.96132 0.88770 1.34890 0.87343 1.26440 0.95011 1.02269 0.93312 1.70010 1.07051 1.29849 1.23715 0.86117 0.80716 0.79244 0.79848 1.18809 1.19649 1.17759 1.69204 1.08677 1.25578 1.19464 1.21615 0.88072 0.89434 0.71535 1.90408 1.49951 1.54159 1.42206 1.22263 0.97442 0.97179 1.03750 1.20553 0.91180 0.95275 1.03060 0.91426 0.90620 0.91536 0.90647 0.88815 0.88814 0.89743 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.34 10.30 36.00 0.37 -0.97 15 2 C 0.33 8.04 7.64 -157.23 -1.20 6.84 15 3 N -0.62 -14.89 10.30 -6.75 -0.07 -14.96 15 4 C 0.22 4.97 7.46 -81.85 -0.61 4.36 15 5 C -0.41 -10.43 6.09 -104.44 -0.64 -11.07 15 6 C 0.29 8.07 6.62 -84.18 -0.56 7.52 15 7 C -0.37 -10.14 9.07 -37.66 -0.34 -10.48 15 8 H 0.11 2.98 6.29 -52.49 -0.33 2.65 15 9 C 0.06 1.48 5.50 -17.30 -0.10 1.39 15 10 N -0.69 -17.38 11.53 55.57 0.64 -16.74 15 11 Si 0.92 18.31 29.56 -169.99 -5.03 13.29 15 12 H -0.26 -5.16 7.11 56.52 0.40 -4.75 15 13 H -0.27 -5.15 7.11 56.52 0.40 -4.75 15 14 H -0.25 -5.12 7.11 56.52 0.40 -4.72 15 15 N -0.51 -13.95 7.93 -8.37 -0.07 -14.02 15 16 C 0.41 9.41 7.66 -30.84 -0.24 9.18 15 17 O -0.49 -12.34 16.42 5.53 0.09 -12.25 15 18 C -0.17 -2.81 6.87 -27.41 -0.19 -2.99 15 19 C -0.06 -1.06 6.80 -27.52 -0.19 -1.25 15 20 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 21 H 0.07 1.43 8.14 -51.93 -0.42 1.01 15 22 H 0.07 1.13 8.14 -51.93 -0.42 0.71 15 23 H 0.28 6.32 8.29 -40.82 -0.34 5.98 15 24 H 0.09 1.35 8.14 -51.93 -0.42 0.93 15 25 H 0.09 1.35 8.14 -51.93 -0.42 0.92 15 26 H 0.08 1.26 8.14 -51.93 -0.42 0.83 15 27 H 0.08 1.26 8.14 -51.93 -0.42 0.83 15 LS Contribution 242.64 15.07 3.66 3.66 Total: -1.00 -31.22 242.64 -6.88 -38.10 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -2.42 Total: 0.40 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -3.68 Total: 2.52 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.50 Total: -45.72 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.09 Total: -12.25 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.29 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -31.22 -6.88 -38.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261062385.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.346 kcal (2) G-P(sol) polarization free energy of solvation -31.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds