Wall clock time and date at job start Mon Mar 30 2020 02:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.32205 * 118.77133 * 2 1 4 4 C 1.32249 * 121.39608 * 180.02562 * 3 2 1 5 5 C 1.39591 * 119.11352 * 359.97438 * 4 3 2 6 6 C 1.42542 * 117.88023 * 0.02562 * 5 4 3 7 7 C 1.41153 * 120.79977 * 179.97438 * 6 5 4 8 8 H 1.07999 * 120.00184 * 0.02562 * 7 6 5 9 9 C 1.40395 * 119.99610 * 180.02562 * 7 6 5 10 10 N 1.30515 * 120.00503 * 359.72741 * 9 7 6 11 11 Si 1.86809 * 119.99874 * 180.02562 * 9 7 6 12 12 H 1.48491 * 109.47213 * 89.99946 * 11 9 7 13 13 H 1.48501 * 109.46949 * 210.00444 * 11 9 7 14 14 H 1.48500 * 109.46668 * 330.00057 * 11 9 7 15 15 N 1.31338 * 118.77456 * 180.31305 * 2 1 3 16 16 C 1.46431 * 110.88947 * 180.02562 * 5 4 3 17 17 O 1.21307 * 125.95099 * 180.02562 * 16 5 4 18 18 C 1.51050 * 108.09634 * 359.97438 * 16 5 4 19 19 C 1.50820 * 131.40285 * 179.97438 * 4 3 2 20 20 H 1.08999 * 109.47329 * 90.00556 * 1 2 3 21 21 H 1.09004 * 109.47296 * 210.00530 * 1 2 3 22 22 H 1.09001 * 109.47205 * 330.00294 * 1 2 3 23 23 H 0.97000 * 120.00524 * 180.02562 * 10 9 7 24 24 H 1.08997 * 110.27881 * 241.04468 * 18 16 5 25 25 H 1.08997 * 110.27540 * 118.95798 * 18 16 5 26 26 H 1.09001 * 110.10373 * 299.19161 * 19 4 3 27 27 H 1.08997 * 110.10498 * 60.74748 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1432 1.1588 0.0000 4 6 3.4643 1.2194 -0.0005 5 6 4.1987 0.0322 -0.0005 6 6 3.4777 -1.1974 -0.0005 7 6 4.1582 -2.4342 -0.0011 8 1 5.2379 -2.4564 -0.0010 9 6 3.4312 -3.6352 -0.0016 10 7 2.1263 -3.6084 0.0038 11 14 4.3316 -5.2720 -0.0016 12 1 4.5696 -5.7060 1.3984 13 1 3.5081 -6.2899 -0.7023 14 1 5.6328 -5.1210 -0.7011 15 7 2.1391 -1.1512 -0.0063 16 6 5.6368 0.3078 -0.0005 17 8 6.5211 -0.5226 -0.0009 18 6 5.8273 1.8063 -0.0011 19 6 4.4089 2.3952 -0.0011 20 1 -0.3634 -0.0001 -1.0276 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3634 0.8900 0.5138 23 1 1.6240 -4.4382 0.0038 24 1 6.3661 2.1182 -0.8958 25 1 6.3660 2.1189 0.8934 26 1 4.2541 2.9997 -0.8948 27 1 4.2540 3.0007 0.8918 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261062385.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:39 Heat of formation + Delta-G solvation = -29.317587 kcal Electronic energy + Delta-G solvation = -14250.631085 eV Core-core repulsion = 11778.922054 eV Total energy + Delta-G solvation = -2471.709031 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.52037 -39.37611 -36.67749 -35.88740 -33.36383 -31.98260 -29.27757 -28.18503 -26.59790 -23.64898 -22.20181 -20.54263 -19.48396 -18.09278 -16.97622 -16.67439 -16.60289 -15.80909 -15.22193 -14.89572 -14.40472 -14.24283 -13.78488 -13.38454 -13.31581 -12.98932 -12.87562 -12.83426 -12.67331 -12.15762 -12.02962 -11.87977 -11.53551 -10.57542 -10.04750 -9.87594 -9.53375 -8.58065 -7.02258 0.02041 0.90170 1.30612 1.45216 1.48757 1.82744 2.10103 2.62608 3.08531 3.63792 3.70415 3.78833 3.96166 4.35345 4.40320 4.63344 4.74828 4.84654 4.86495 4.89048 5.02040 5.10947 5.14195 5.17824 5.26550 5.84398 5.98194 6.32467 6.61407 6.94423 6.97556 8.00978 8.11811 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.025621 B = 0.013194 C = 0.008780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.589599 B = 2121.642329 C = 3188.386678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.309 3.691 3 N -0.624 5.624 4 C 0.212 3.788 5 C -0.456 4.456 6 C 0.254 3.746 7 C -0.409 4.409 8 H 0.093 0.907 9 C 0.020 3.980 10 N -0.716 5.716 11 Si 0.993 3.007 12 H -0.255 1.255 13 H -0.250 1.250 14 H -0.262 1.262 15 N -0.544 5.544 16 C 0.399 3.601 17 O -0.524 6.524 18 C -0.148 4.148 19 C -0.054 4.054 20 H 0.084 0.916 21 H 0.074 0.926 22 H 0.090 0.910 23 H 0.294 0.706 24 H 0.126 0.874 25 H 0.127 0.873 26 H 0.115 0.885 27 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.535 5.309 0.003 5.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.039 3.961 3 N -0.349 5.349 4 C 0.065 3.935 5 C -0.466 4.466 6 C 0.130 3.870 7 C -0.439 4.439 8 H 0.111 0.889 9 C -0.207 4.207 10 N -0.336 5.336 11 Si 0.811 3.189 12 H -0.180 1.180 13 H -0.174 1.174 14 H -0.186 1.186 15 N -0.264 5.264 16 C 0.284 3.716 17 O -0.407 6.407 18 C -0.186 4.186 19 C -0.092 4.092 20 H 0.102 0.898 21 H 0.092 0.908 22 H 0.109 0.891 23 H 0.106 0.894 24 H 0.144 0.856 25 H 0.144 0.856 26 H 0.134 0.866 27 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.232 4.691 -0.002 4.697 hybrid contribution 0.962 -0.895 -0.010 1.314 sum 0.730 3.796 -0.012 3.866 Atomic orbital electron populations 1.20376 0.85024 1.03282 1.03381 1.23962 0.99150 0.84325 0.88654 1.67483 1.08979 1.29972 1.28471 1.22458 0.90138 0.95946 0.84939 1.22392 0.98511 0.97006 1.28679 1.19082 0.88268 0.92638 0.86976 1.20461 0.95711 0.90387 1.37388 0.88890 1.27288 0.95792 1.05200 0.92435 1.70026 1.08264 1.31547 1.23739 0.85052 0.79021 0.74642 0.80197 1.17953 1.17373 1.18598 1.69200 1.08752 1.27118 1.21362 1.22398 0.86631 0.92552 0.69976 1.90376 1.50383 1.56177 1.43779 1.22274 0.98188 0.91326 1.06796 1.20774 0.89109 0.93361 1.05934 0.89789 0.90758 0.89102 0.89444 0.85567 0.85552 0.86645 0.86622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.34 10.30 71.23 0.73 -1.61 15 2 C 0.31 15.28 7.64 138.76 1.06 16.34 15 3 N -0.62 -29.42 10.30 -175.26 -1.81 -31.22 15 4 C 0.21 9.50 7.46 42.86 0.32 9.82 15 5 C -0.46 -23.61 6.09 -19.74 -0.12 -23.73 15 6 C 0.25 14.85 6.62 40.61 0.27 15.12 15 7 C -0.41 -23.52 9.07 23.51 0.21 -23.31 15 8 H 0.09 5.44 6.29 -2.91 -0.02 5.42 15 9 C 0.02 1.01 5.50 85.41 0.47 1.48 15 10 N -0.72 -37.21 11.53 21.90 0.25 -36.96 15 11 Si 0.99 38.35 29.56 68.60 2.03 40.38 15 12 H -0.26 -9.44 7.11 99.48 0.71 -8.73 15 13 H -0.25 -8.71 7.11 99.48 0.71 -8.00 15 14 H -0.26 -10.32 7.11 99.48 0.71 -9.61 15 15 N -0.54 -30.71 7.93 -180.38 -1.43 -32.14 15 16 C 0.40 18.20 7.66 27.93 0.21 18.42 15 17 O -0.52 -27.13 16.42 -3.11 -0.05 -27.18 15 18 C -0.15 -4.39 6.87 30.15 0.21 -4.18 15 19 C -0.05 -1.61 6.80 30.08 0.20 -1.41 15 20 H 0.08 2.87 8.14 -2.39 -0.02 2.85 15 21 H 0.07 2.79 8.14 -2.38 -0.02 2.77 15 22 H 0.09 2.93 8.14 -2.39 -0.02 2.91 15 23 H 0.29 13.36 8.29 -92.71 -0.77 12.59 15 24 H 0.13 3.01 8.14 -2.39 -0.02 2.99 15 25 H 0.13 3.01 8.14 -2.39 -0.02 2.99 15 26 H 0.12 2.83 8.14 -2.39 -0.02 2.81 15 27 H 0.12 2.83 8.14 -2.39 -0.02 2.81 15 Total: -1.00 -72.16 242.64 3.76 -68.39 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 1.20 Total: 11.79 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 3.57 Total: 6.93 kcal Atomic # 7 Polarization: -97.34 SS G_CDS: -2.98 Total: -100.32 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.05 Total: -27.18 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.38 kcal Total: -72.16 3.76 -68.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261062385.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.077 kcal (2) G-P(sol) polarization free energy of solvation -72.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds