Wall clock time and date at job start Mon Mar 30 2020 02:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.38444 * 2 1 4 4 H 1.08007 * 119.99879 * 240.20813 * 3 2 1 5 5 C 1.37881 * 120.00198 * 60.21198 * 3 2 1 6 6 N 1.31517 * 119.99779 * 359.97438 * 5 3 2 7 7 Si 1.86799 * 119.99856 * 180.02562 * 5 3 2 8 8 H 1.48497 * 109.47136 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47017 * 119.99846 * 7 5 3 10 10 H 1.48502 * 109.46773 * 239.99750 * 7 5 3 11 11 C 1.52585 * 109.38395 * 240.20900 * 2 1 3 12 12 C 1.52589 * 110.64317 * 309.83011 * 11 2 1 13 13 C 1.53038 * 109.98563 * 290.01502 * 12 11 2 14 14 S 1.81670 * 108.99873 * 63.64685 * 13 12 11 15 15 O 1.42098 * 108.66046 * 60.03188 * 14 13 12 16 16 O 1.42096 * 108.66057 * 191.36920 * 14 13 12 17 17 C 1.53035 * 109.38179 * 119.68352 * 2 1 3 18 18 H 1.08999 * 109.47379 * 172.53255 * 1 2 3 19 19 H 1.08996 * 109.47039 * 292.54093 * 1 2 3 20 20 H 1.09010 * 109.46845 * 52.53652 * 1 2 3 21 21 H 0.96998 * 119.99472 * 180.02562 * 6 5 3 22 22 H 1.09010 * 109.24146 * 189.52843 * 11 2 1 23 23 H 1.08998 * 109.24311 * 70.13409 * 11 2 1 24 24 H 1.09001 * 109.38238 * 169.86244 * 12 11 2 25 25 H 1.08992 * 109.38292 * 50.17386 * 12 11 2 26 26 H 1.09008 * 109.54783 * 303.79184 * 13 12 11 27 27 H 1.08996 * 109.62999 * 183.55861 * 13 12 11 28 28 H 1.08999 * 109.55450 * 296.65403 * 17 2 1 29 29 H 1.09001 * 109.54797 * 176.36387 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0302 1.4216 0.0000 4 1 2.6478 1.7767 -0.8118 5 6 1.6995 2.2688 1.0363 6 7 0.9470 1.8364 2.0245 7 14 2.3189 4.0311 1.0358 8 1 3.1394 4.2671 -0.1792 9 1 1.1622 4.9624 1.0412 10 1 3.1480 4.2646 2.2455 11 6 2.0364 -0.7151 -1.2491 12 6 1.3522 -2.0697 -1.4082 13 6 1.8389 -3.0322 -0.3224 14 16 1.3401 -2.3915 1.3027 15 8 -0.0771 -2.2934 1.3373 16 8 2.0120 -3.1348 2.3103 17 6 2.0379 -0.7149 1.2542 18 1 -0.3634 -1.0189 -0.1336 19 1 -0.3633 0.3939 0.9491 20 1 -0.3633 0.6251 -0.8158 21 1 0.7141 2.4326 2.7533 22 1 3.1131 -0.8640 -1.1662 23 1 1.8258 -0.1012 -2.1248 24 1 1.5889 -2.4816 -2.3892 25 1 0.2732 -1.9423 -1.3216 26 1 2.9252 -3.1114 -0.3655 27 1 1.3951 -4.0153 -0.4789 28 1 1.7243 -0.1635 2.1406 29 1 3.1259 -0.7734 1.2253 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261112489.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:31 Heat of formation + Delta-G solvation = -97.737989 kcal Electronic energy + Delta-G solvation = -14058.072365 eV Core-core repulsion = 11686.547603 eV Total energy + Delta-G solvation = -2371.524762 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 218.076 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.24752 -37.61595 -36.84000 -34.87475 -32.31627 -28.49324 -27.56221 -27.17491 -23.47097 -20.48695 -19.33945 -18.42316 -17.48789 -16.89214 -16.43091 -16.39454 -15.48493 -14.97523 -14.54958 -14.14794 -13.96581 -13.54234 -13.01769 -12.98895 -12.90893 -12.49822 -12.47814 -12.31332 -12.04286 -11.91126 -11.76547 -11.40909 -11.25975 -10.76997 -10.38145 -10.26027 -8.02800 -6.20402 -0.59964 1.41453 1.46037 1.54378 2.06958 2.44558 2.95069 3.16434 3.32230 3.95388 3.97975 4.30958 4.39445 4.47568 4.70657 4.77039 4.91513 5.10183 5.16280 5.33115 5.35475 5.46451 5.62174 5.70746 6.03424 6.25128 6.39234 6.89591 7.49275 8.96377 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.044035 B = 0.011898 C = 0.010792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.706398 B = 2352.867332 C = 2593.912524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.072 3.928 3 C -0.509 4.509 4 H 0.063 0.937 5 C 0.016 3.984 6 N -0.911 5.911 7 Si 0.948 3.052 8 H -0.264 1.264 9 H -0.288 1.288 10 H -0.287 1.287 11 C -0.123 4.123 12 C -0.114 4.114 13 C -0.576 4.576 14 S 2.388 3.612 15 O -0.980 6.980 16 O -1.006 7.006 17 C -0.563 4.563 18 H 0.066 0.934 19 H 0.049 0.951 20 H 0.032 0.968 21 H 0.259 0.741 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.110 0.890 25 H 0.078 0.922 26 H 0.156 0.844 27 H 0.151 0.849 28 H 0.125 0.875 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.067 -6.695 -6.896 10.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.070 3.930 3 C -0.548 4.548 4 H 0.081 0.919 5 C -0.183 4.183 6 N -0.551 5.551 7 Si 0.775 3.225 8 H -0.188 1.188 9 H -0.214 1.214 10 H -0.213 1.213 11 C -0.160 4.160 12 C -0.152 4.152 13 C -0.709 4.709 14 S 2.580 3.420 15 O -0.977 6.977 16 O -1.003 7.003 17 C -0.696 4.696 18 H 0.084 0.916 19 H 0.068 0.932 20 H 0.051 0.949 21 H 0.069 0.931 22 H 0.093 0.907 23 H 0.092 0.908 24 H 0.129 0.871 25 H 0.096 0.904 26 H 0.174 0.826 27 H 0.169 0.831 28 H 0.142 0.858 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.489 -7.101 -6.004 9.627 hybrid contribution 0.533 1.635 0.135 1.725 sum 3.022 -5.466 -5.870 8.571 Atomic orbital electron populations 1.22350 0.97586 1.00400 1.01484 1.17899 0.92581 0.94274 0.88221 1.21494 1.30974 0.95877 1.06439 0.91856 1.25665 0.95241 1.01858 0.95572 1.69893 1.37663 1.36482 1.11014 0.85660 0.77918 0.80984 0.77967 1.18829 1.21406 1.21287 1.21727 1.00635 0.95056 0.98584 1.21476 1.01556 0.93249 0.98940 1.29968 1.13495 1.10449 1.16948 1.08505 0.75651 0.79067 0.78790 1.93475 1.29999 1.86923 1.87305 1.93436 1.77085 1.71646 1.58144 1.30152 1.10732 1.17333 1.11342 0.91567 0.93236 0.94929 0.93123 0.90680 0.90795 0.87118 0.90394 0.82636 0.83062 0.85753 0.86161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.38 6.73 71.98 0.48 -6.90 15 2 C 0.07 3.10 0.49 -53.05 -0.03 3.07 15 3 C -0.51 -25.07 7.96 25.60 0.20 -24.87 15 4 H 0.06 3.02 7.74 -2.91 -0.02 3.00 15 5 C 0.02 0.81 5.14 84.66 0.43 1.24 15 6 N -0.91 -49.95 9.39 21.45 0.20 -49.75 15 7 Si 0.95 41.65 29.54 68.60 2.03 43.68 15 8 H -0.26 -11.10 7.11 99.48 0.71 -10.39 15 9 H -0.29 -12.75 7.11 99.48 0.71 -12.04 15 10 H -0.29 -12.61 7.11 99.48 0.71 -11.90 15 11 C -0.12 -3.97 4.50 30.32 0.14 -3.83 15 12 C -0.11 -2.96 5.55 30.47 0.17 -2.79 15 13 C -0.58 -14.15 6.35 71.99 0.46 -13.69 15 14 S 2.39 88.39 5.19 -56.49 -0.29 88.10 15 15 O -0.98 -42.77 14.87 -127.39 -1.89 -44.67 15 16 O -1.01 -42.32 18.10 -127.39 -2.31 -44.63 15 17 C -0.56 -23.80 4.99 71.99 0.36 -23.44 15 18 H 0.07 2.75 3.28 -2.39 -0.01 2.75 15 19 H 0.05 2.63 6.30 -2.39 -0.02 2.61 15 20 H 0.03 1.45 8.13 -2.38 -0.02 1.43 15 21 H 0.26 13.78 8.31 -92.71 -0.77 13.01 15 22 H 0.07 2.16 8.09 -2.38 -0.02 2.14 15 23 H 0.07 2.35 8.09 -2.39 -0.02 2.33 15 24 H 0.11 2.08 8.14 -2.39 -0.02 2.06 15 25 H 0.08 2.21 5.64 -2.39 -0.01 2.19 15 26 H 0.16 2.97 8.14 -2.38 -0.02 2.95 15 27 H 0.15 2.86 8.14 -2.39 -0.02 2.85 15 28 H 0.12 6.25 5.93 -2.39 -0.01 6.23 15 29 H 0.12 4.52 8.14 -2.39 -0.02 4.50 15 Total: -1.00 -65.86 234.21 1.09 -64.76 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 1.14 Total: 13.72 kcal Atomic # 6 Polarization: -73.43 SS G_CDS: 2.22 Total: -71.21 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.20 Total: -49.75 kcal Atomic # 8 Polarization: -85.10 SS G_CDS: -4.20 Total: -89.30 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Atomic # 16 Polarization: 88.39 SS G_CDS: -0.29 Total: 88.10 kcal Total: -65.86 1.09 -64.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261112489.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.975 kcal (2) G-P(sol) polarization free energy of solvation -65.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds