Wall clock time and date at job start Mon Mar 30 2020 02:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35710 * 116.99923 * 2 1 4 4 C 1.36554 * 120.61866 * 359.97438 * 3 2 1 5 5 C 1.39302 * 121.53493 * 179.97438 * 4 3 2 6 6 C 1.35796 * 122.55734 * 359.97438 * 5 4 3 7 7 C 1.40784 * 120.29367 * 0.02562 * 6 5 4 8 8 N 1.32398 * 134.69812 * 179.97438 * 7 6 5 9 9 N 1.39986 * 108.95266 * 180.02562 * 8 7 6 10 10 C 1.37089 * 125.10933 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00076 * 185.64398 * 10 9 8 12 12 C 1.39062 * 120.00328 * 5.92324 * 10 9 8 13 13 N 1.31219 * 119.99783 * 353.68735 * 12 10 9 14 14 Si 1.86803 * 120.00039 * 173.68588 * 12 10 9 15 15 H 1.48500 * 109.47085 * 94.98217 * 14 12 10 16 16 H 1.48500 * 109.46883 * 214.98180 * 14 12 10 17 17 H 1.48497 * 109.47388 * 334.97859 * 14 12 10 18 18 C 1.35132 * 109.77564 * 0.22853 * 9 8 7 19 19 C 1.37845 * 107.82908 * 359.63225 * 18 9 8 20 20 H 1.09004 * 109.46976 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47429 * 299.99855 * 1 2 3 22 22 H 1.09002 * 109.46918 * 60.00345 * 1 2 3 23 23 H 1.07997 * 119.23701 * 0.02562 * 4 3 2 24 24 H 1.08003 * 118.72521 * 179.97438 * 5 4 3 25 25 H 1.08002 * 119.84841 * 180.02562 * 6 5 4 26 26 H 0.97003 * 119.99824 * 180.02562 * 13 12 10 27 27 H 1.07998 * 126.08680 * 179.77441 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.3138 2.3624 -0.0005 5 6 1.9262 3.6135 0.0000 6 6 3.2755 3.7667 0.0016 7 6 4.1182 2.6389 0.0022 8 7 5.4295 2.4562 0.0032 9 7 5.6972 1.0822 0.0028 10 6 6.9487 0.5227 0.0031 11 1 7.0619 -0.5474 -0.0893 12 6 8.0724 1.3324 0.1281 13 7 7.9440 2.6383 0.1212 14 14 9.7644 0.5610 0.3059 15 1 10.4117 0.4746 -1.0278 16 1 10.5973 1.3973 1.2072 17 1 9.6293 -0.8019 0.8798 18 6 4.5365 0.3903 -0.0036 19 6 3.5020 1.3014 0.0011 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 0.2354 2.3031 -0.0005 24 1 1.3038 4.4962 -0.0009 25 1 3.7040 4.7580 0.0023 26 1 8.7279 3.2031 0.2080 27 1 4.4369 -0.6851 -0.0088 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261191015.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:03 Heat of formation + Delta-G solvation = 56.228803 kcal Electronic energy + Delta-G solvation = -13970.712424 eV Core-core repulsion = 11502.712963 eV Total energy + Delta-G solvation = -2467.999461 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.74560 -38.32593 -35.44566 -33.40964 -30.47332 -29.66518 -27.25423 -27.00155 -25.42220 -22.18050 -20.55777 -19.56585 -18.05535 -16.51772 -15.79594 -15.58985 -15.12072 -14.83030 -14.18967 -13.96625 -13.53581 -12.61706 -12.05052 -11.95042 -11.75685 -11.62227 -11.24748 -11.20589 -10.74914 -10.60326 -10.37056 -10.18247 -9.38904 -8.77749 -8.48724 -7.67144 -6.88487 -6.24563 -4.57664 2.02584 2.87164 2.91376 2.97583 2.99159 3.61161 3.76010 3.89034 4.54695 4.78759 5.01995 5.43125 5.50846 5.56375 5.72644 5.86981 6.07376 6.27709 6.58157 6.63806 6.71357 6.82634 7.13535 7.27689 7.47582 7.55649 7.72921 7.99975 8.28124 8.44933 9.06015 9.43647 10.03779 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.050107 B = 0.007972 C = 0.006908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.670664 B = 3511.572649 C = 4052.023868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.321 6.321 3 C 0.173 3.827 4 C -0.281 4.281 5 C -0.093 4.093 6 C -0.127 4.127 7 C 0.062 3.938 8 N -0.290 5.290 9 N -0.090 5.090 10 C -0.306 4.306 11 H 0.128 0.872 12 C 0.046 3.954 13 N -0.738 5.738 14 Si 0.942 3.058 15 H -0.267 1.267 16 H -0.272 1.272 17 H -0.259 1.259 18 C -0.076 4.076 19 C -0.205 4.205 20 H 0.088 0.912 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.105 0.895 24 H 0.103 0.897 25 H 0.107 0.893 26 H 0.282 0.718 27 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.645 -3.111 0.133 6.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.234 6.234 3 C 0.126 3.874 4 C -0.302 4.302 5 C -0.115 4.115 6 C -0.150 4.150 7 C -0.083 4.083 8 N -0.124 5.124 9 N 0.151 4.849 10 C -0.442 4.442 11 H 0.145 0.855 12 C -0.176 4.176 13 N -0.362 5.362 14 Si 0.765 3.235 15 H -0.192 1.192 16 H -0.196 1.196 17 H -0.182 1.182 18 C -0.229 4.229 19 C -0.216 4.216 20 H 0.107 0.893 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.123 0.877 24 H 0.121 0.879 25 H 0.125 0.875 26 H 0.093 0.907 27 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.254 -2.487 0.151 4.930 hybrid contribution -0.386 -0.553 0.064 0.677 sum -4.639 -3.040 0.215 5.551 Atomic orbital electron populations 1.22877 0.79939 1.02556 1.00916 1.85947 1.20038 1.28608 1.88820 1.19138 0.89366 0.83079 0.95810 1.19996 0.97894 0.92218 1.20106 1.19771 0.93754 0.95636 1.02306 1.19390 0.91821 0.95335 1.08430 1.21015 0.91978 0.92721 1.02597 1.78835 1.10152 0.90222 1.33175 1.44798 1.04724 1.04430 1.30917 1.20331 0.79447 0.94325 1.50049 0.85495 1.25873 1.01532 0.95241 0.94959 1.70219 1.31973 1.03641 1.30345 0.85674 0.78975 0.79675 0.79205 1.19168 1.19620 1.18228 1.21738 0.85018 0.96965 1.19183 1.19466 0.89012 0.93619 1.19513 0.89322 0.93261 0.93252 0.87659 0.87903 0.87501 0.90666 0.82634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.82 101.05 0.99 1.44 15 2 O -0.32 -6.30 10.53 -18.83 -0.20 -6.50 15 3 C 0.17 3.87 6.89 -37.09 -0.26 3.62 15 4 C -0.28 -5.66 8.98 -39.79 -0.36 -6.02 15 5 C -0.09 -1.89 9.84 -40.06 -0.39 -2.29 15 6 C -0.13 -2.97 10.03 -39.49 -0.40 -3.36 15 7 C 0.06 1.67 7.49 -82.99 -0.62 1.04 15 8 N -0.29 -8.44 10.33 33.26 0.34 -8.10 15 9 N -0.09 -2.49 3.67 -11.25 -0.04 -2.53 15 10 C -0.31 -7.81 10.16 -14.90 -0.15 -7.96 15 11 H 0.13 2.84 7.84 -52.49 -0.41 2.43 15 12 C 0.05 1.11 5.49 -17.51 -0.10 1.02 15 13 N -0.74 -19.55 11.75 55.50 0.65 -18.90 15 14 Si 0.94 17.66 29.56 -169.99 -5.02 12.63 15 15 H -0.27 -4.90 7.11 56.52 0.40 -4.50 15 16 H -0.27 -5.04 7.11 56.52 0.40 -4.64 15 17 H -0.26 -4.64 7.11 56.52 0.40 -4.24 15 18 C -0.08 -1.93 11.45 -16.24 -0.19 -2.11 15 19 C -0.20 -5.25 6.50 -103.27 -0.67 -5.92 15 20 H 0.09 0.95 8.14 -51.93 -0.42 0.53 15 21 H 0.05 0.63 7.67 -51.93 -0.40 0.23 15 22 H 0.05 0.63 7.67 -51.93 -0.40 0.23 15 23 H 0.11 1.77 6.23 -52.49 -0.33 1.44 15 24 H 0.10 1.72 8.06 -52.48 -0.42 1.30 15 25 H 0.11 2.31 8.06 -52.49 -0.42 1.88 15 26 H 0.28 6.72 8.30 -40.82 -0.34 6.38 15 27 H 0.16 3.45 8.06 -52.49 -0.42 3.02 15 LS Contribution 243.85 15.07 3.67 3.67 Total: -1.00 -31.11 243.85 -5.09 -36.20 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -2.36 Total: 4.07 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: -2.14 Total: -20.55 kcal Atomic # 7 Polarization: -30.49 SS G_CDS: 0.95 Total: -29.53 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.20 Total: -6.50 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.02 Total: 12.63 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -31.11 -5.09 -36.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261191015.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.429 kcal (2) G-P(sol) polarization free energy of solvation -31.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds