Wall clock time and date at job start Mon Mar 30 2020 02:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35710 * 116.99923 * 2 1 4 4 C 1.36554 * 120.61866 * 359.97438 * 3 2 1 5 5 C 1.39302 * 121.53493 * 179.97438 * 4 3 2 6 6 C 1.35796 * 122.55734 * 359.97438 * 5 4 3 7 7 C 1.40784 * 120.29367 * 0.02562 * 6 5 4 8 8 N 1.32398 * 134.69812 * 179.97438 * 7 6 5 9 9 N 1.39986 * 108.95266 * 180.02562 * 8 7 6 10 10 C 1.37089 * 125.10933 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00076 * 185.64398 * 10 9 8 12 12 C 1.39062 * 120.00328 * 5.92324 * 10 9 8 13 13 N 1.31219 * 119.99783 * 353.68735 * 12 10 9 14 14 Si 1.86803 * 120.00039 * 173.68588 * 12 10 9 15 15 H 1.48500 * 109.47085 * 94.98217 * 14 12 10 16 16 H 1.48500 * 109.46883 * 214.98180 * 14 12 10 17 17 H 1.48497 * 109.47388 * 334.97859 * 14 12 10 18 18 C 1.35132 * 109.77564 * 0.22853 * 9 8 7 19 19 C 1.37845 * 107.82908 * 359.63225 * 18 9 8 20 20 H 1.09004 * 109.46976 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47429 * 299.99855 * 1 2 3 22 22 H 1.09002 * 109.46918 * 60.00345 * 1 2 3 23 23 H 1.07997 * 119.23701 * 0.02562 * 4 3 2 24 24 H 1.08003 * 118.72521 * 179.97438 * 5 4 3 25 25 H 1.08002 * 119.84841 * 180.02562 * 6 5 4 26 26 H 0.97003 * 119.99824 * 180.02562 * 13 12 10 27 27 H 1.07998 * 126.08680 * 179.77441 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.3138 2.3624 -0.0005 5 6 1.9262 3.6135 0.0000 6 6 3.2755 3.7667 0.0016 7 6 4.1182 2.6389 0.0022 8 7 5.4295 2.4562 0.0032 9 7 5.6972 1.0822 0.0028 10 6 6.9487 0.5227 0.0031 11 1 7.0619 -0.5474 -0.0893 12 6 8.0724 1.3324 0.1281 13 7 7.9440 2.6383 0.1212 14 14 9.7644 0.5610 0.3059 15 1 10.4117 0.4746 -1.0278 16 1 10.5973 1.3973 1.2072 17 1 9.6293 -0.8019 0.8798 18 6 4.5365 0.3903 -0.0036 19 6 3.5020 1.3014 0.0011 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 0.2354 2.3031 -0.0005 24 1 1.3038 4.4962 -0.0009 25 1 3.7040 4.7580 0.0023 26 1 8.7279 3.2031 0.2080 27 1 4.4369 -0.6851 -0.0088 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261191015.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:03 Heat of formation + Delta-G solvation = 35.986805 kcal Electronic energy + Delta-G solvation = -13971.590183 eV Core-core repulsion = 11502.712963 eV Total energy + Delta-G solvation = -2468.877220 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.57853 -39.89964 -37.15131 -35.23035 -32.34924 -31.40025 -29.02703 -28.39159 -27.14024 -23.97213 -22.34131 -21.30445 -19.90378 -18.21016 -17.53859 -17.27503 -16.48598 -16.45418 -15.78683 -15.62116 -15.43527 -14.22140 -13.69648 -13.56360 -13.42404 -13.17321 -12.86987 -12.65267 -12.35100 -12.09143 -11.92035 -11.75814 -11.13733 -10.70788 -10.31487 -9.52402 -8.70003 -8.05547 -6.51352 0.26456 1.18903 1.36208 1.41811 1.57297 1.93520 2.03082 2.41087 2.77709 2.93195 3.21538 3.82234 4.25774 4.28380 4.45578 4.50089 4.61543 4.78478 4.81487 4.89435 5.00196 5.01259 5.35339 5.56981 5.70994 5.84363 5.98111 6.17236 6.54784 6.77816 7.18339 7.49996 8.26489 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.050107 B = 0.007972 C = 0.006908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.670664 B = 3511.572649 C = 4052.023868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.337 6.337 3 C 0.172 3.828 4 C -0.276 4.276 5 C -0.070 4.070 6 C -0.163 4.163 7 C 0.033 3.967 8 N -0.342 5.342 9 N -0.111 5.111 10 C -0.342 4.342 11 H 0.150 0.850 12 C -0.001 4.001 13 N -0.791 5.791 14 Si 1.028 2.972 15 H -0.258 1.258 16 H -0.270 1.270 17 H -0.242 1.242 18 C -0.086 4.086 19 C -0.237 4.237 20 H 0.120 0.880 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.149 0.851 24 H 0.149 0.851 25 H 0.111 0.889 26 H 0.287 0.713 27 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.307 -4.053 0.232 8.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.251 6.251 3 C 0.124 3.876 4 C -0.297 4.297 5 C -0.091 4.091 6 C -0.185 4.185 7 C -0.112 4.112 8 N -0.177 5.177 9 N 0.130 4.870 10 C -0.476 4.476 11 H 0.167 0.833 12 C -0.217 4.217 13 N -0.416 5.416 14 Si 0.845 3.155 15 H -0.183 1.183 16 H -0.194 1.194 17 H -0.165 1.165 18 C -0.239 4.239 19 C -0.248 4.248 20 H 0.138 0.862 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.167 0.833 24 H 0.166 0.834 25 H 0.130 0.870 26 H 0.097 0.903 27 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -5.957 -3.437 0.246 6.882 hybrid contribution -0.174 -0.281 0.020 0.332 sum -6.132 -3.718 0.266 7.176 Atomic orbital electron populations 1.23322 0.76533 1.05271 1.02233 1.85919 1.23408 1.27372 1.88363 1.19214 0.88377 0.84902 0.95149 1.20509 1.00024 0.91183 1.17950 1.20308 0.92863 0.97632 0.98294 1.19687 0.93051 0.94738 1.11071 1.21596 0.91953 0.94672 1.02943 1.78675 1.11875 0.91679 1.35475 1.45084 1.05775 1.04226 1.31919 1.21119 0.79628 0.95776 1.51068 0.83280 1.27160 1.05823 0.95411 0.93310 1.70368 1.33555 1.05664 1.31970 0.84458 0.72524 0.79127 0.79404 1.18294 1.19429 1.16453 1.22264 0.84887 0.98136 1.18650 1.19914 0.91158 0.93091 1.20682 0.86203 0.91818 0.91798 0.83315 0.83375 0.87049 0.90251 0.80340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.82 113.37 1.11 1.59 15 2 O -0.34 -12.42 10.53 -90.31 -0.95 -13.37 15 3 C 0.17 7.38 6.89 23.88 0.16 7.54 15 4 C -0.28 -10.17 8.98 22.13 0.20 -9.97 15 5 C -0.07 -2.64 9.84 21.96 0.22 -2.43 15 6 C -0.16 -7.64 10.03 22.33 0.22 -7.42 15 7 C 0.03 1.82 7.49 42.06 0.32 2.14 15 8 N -0.34 -21.01 10.33 -48.67 -0.50 -21.51 15 9 N -0.11 -6.41 3.67 -189.50 -0.70 -7.10 15 10 C -0.34 -18.00 10.16 84.07 0.85 -17.14 15 11 H 0.15 6.77 7.84 -2.91 -0.02 6.75 15 12 C 0.00 -0.04 5.49 84.98 0.47 0.43 15 13 N -0.79 -43.85 11.75 21.67 0.25 -43.59 15 14 Si 1.03 36.36 29.56 68.60 2.03 38.38 15 15 H -0.26 -8.72 7.11 99.48 0.71 -8.02 15 16 H -0.27 -9.34 7.11 99.48 0.71 -8.63 15 17 H -0.24 -7.79 7.11 99.48 0.71 -7.09 15 18 C -0.09 -4.49 11.45 84.09 0.96 -3.53 15 19 C -0.24 -12.36 6.50 -18.99 -0.12 -12.48 15 20 H 0.12 2.05 8.14 -2.38 -0.02 2.03 15 21 H 0.06 1.32 7.67 -2.39 -0.02 1.30 15 22 H 0.06 1.32 7.67 -2.39 -0.02 1.30 15 23 H 0.15 4.15 6.23 -2.91 -0.02 4.13 15 24 H 0.15 4.25 8.06 -2.91 -0.02 4.23 15 25 H 0.11 4.92 8.06 -2.91 -0.02 4.90 15 26 H 0.29 14.31 8.30 -92.71 -0.77 13.54 15 27 H 0.18 8.05 8.06 -2.91 -0.02 8.02 15 Total: -1.00 -71.69 243.85 5.71 -65.98 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 1.18 Total: 22.47 kcal Atomic # 6 Polarization: -45.65 SS G_CDS: 4.39 Total: -41.26 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -0.94 Total: -72.21 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.95 Total: -13.37 kcal Atomic # 14 Polarization: 36.36 SS G_CDS: 2.03 Total: 38.38 kcal Total: -71.69 5.71 -65.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261191015.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.971 kcal (2) G-P(sol) polarization free energy of solvation -71.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds