Wall clock time and date at job start Mon Mar 30 2020 02:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35663 * 117.00370 * 2 1 4 4 C 1.40550 * 120.43331 * 359.97438 * 3 2 1 5 5 C 1.35151 * 120.23444 * 179.97438 * 4 3 2 6 6 N 1.36464 * 120.90455 * 0.04823 * 5 4 3 7 7 N 1.40042 * 131.80306 * 180.02562 * 6 5 4 8 8 C 1.30552 * 109.95209 * 179.97438 * 7 6 5 9 9 C 1.41331 * 108.76437 * 359.77613 * 8 7 6 10 10 C 1.40691 * 126.72046 * 180.27559 * 9 8 7 11 11 H 1.07991 * 119.99925 * 180.10087 * 10 9 8 12 12 C 1.39547 * 119.99591 * 0.09492 * 10 9 8 13 13 N 1.31213 * 120.00163 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99497 * 180.02562 * 12 10 9 15 15 H 1.48492 * 109.47466 * 60.00235 * 14 12 10 16 16 H 1.48506 * 109.46844 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47302 * 299.99858 * 14 12 10 18 18 C 1.37001 * 120.22563 * 359.95510 * 6 5 4 19 19 C 1.38684 * 120.43639 * 180.02562 * 3 2 1 20 20 H 1.08998 * 109.47003 * 60.00039 * 1 2 3 21 21 H 1.09001 * 109.47106 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46640 * 299.99947 * 1 2 3 23 23 H 1.08003 * 119.88037 * 0.02943 * 4 3 2 24 24 H 1.07988 * 119.54614 * 180.02562 * 5 4 3 25 25 H 1.07999 * 125.61765 * 179.97438 * 8 7 6 26 26 H 0.97005 * 120.00189 * 179.97438 * 13 12 10 27 27 H 1.08002 * 120.44547 * 359.95796 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 1.2885 2.3933 -0.0005 5 6 1.9064 3.5953 0.0000 6 7 3.2682 3.6834 0.0001 7 7 4.1323 4.7854 0.0010 8 6 5.3729 4.3788 0.0012 9 6 5.3880 2.9656 0.0056 10 6 6.5247 2.1365 0.0126 11 1 6.4099 1.0627 0.0138 12 6 7.8005 2.7019 0.0179 13 7 7.9400 4.0066 0.0169 14 14 9.3097 1.6011 0.0265 15 1 9.3030 0.7423 -1.1848 16 1 10.5347 2.4407 0.0318 17 1 9.2915 0.7455 1.2401 18 6 4.0328 2.5467 0.0005 19 6 3.4294 1.2918 -0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.2097 2.3427 -0.0005 24 1 1.3143 4.4984 0.0000 25 1 6.2440 5.0171 0.0015 26 1 8.8269 4.3996 0.0209 27 1 4.0314 0.3951 -0.0003 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261270817.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:42 Heat of formation + Delta-G solvation = 60.602275 kcal Electronic energy + Delta-G solvation = -13976.645975 eV Core-core repulsion = 11508.836162 eV Total energy + Delta-G solvation = -2467.809813 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.37311 -38.43380 -35.19023 -33.47525 -31.29293 -29.04405 -28.48287 -26.75976 -24.35917 -22.66613 -20.92033 -20.03345 -17.62561 -16.74896 -16.00845 -15.52414 -15.24976 -14.87927 -14.09674 -13.95743 -13.36209 -13.01263 -12.31286 -12.18596 -11.50315 -11.46428 -11.26277 -11.22102 -10.82066 -10.45985 -10.16787 -10.10001 -9.40175 -9.07434 -8.75903 -7.81083 -6.68281 -6.65632 -3.94938 1.89519 2.25848 3.09543 3.11068 3.14754 3.69933 3.88277 3.98524 4.18211 4.37239 5.19623 5.39257 5.39528 5.43718 5.55775 5.70915 5.95108 6.12976 6.47866 6.74936 6.82131 6.89781 7.11650 7.43526 7.49099 7.86510 8.03885 8.39745 8.42723 8.71762 8.91099 9.20202 10.29734 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.039387 B = 0.008537 C = 0.007043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.721209 B = 3278.899195 C = 3974.470006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.320 6.320 3 C 0.039 3.961 4 C -0.239 4.239 5 C 0.133 3.867 6 N -0.311 5.311 7 N -0.339 5.339 8 C 0.042 3.958 9 C -0.008 4.008 10 C -0.410 4.410 11 H 0.076 0.924 12 C 0.062 3.938 13 N -0.830 5.830 14 Si 0.924 3.076 15 H -0.267 1.267 16 H -0.279 1.279 17 H -0.267 1.267 18 C -0.049 4.049 19 C -0.076 4.076 20 H 0.047 0.953 21 H 0.088 0.912 22 H 0.047 0.953 23 H 0.133 0.867 24 H 0.145 0.855 25 H 0.215 0.785 26 H 0.280 0.720 27 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.724 -3.654 -0.015 8.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.235 6.235 3 C -0.008 4.008 4 C -0.264 4.264 5 C 0.007 3.993 6 N -0.087 5.087 7 N -0.163 5.163 8 C -0.138 4.138 9 C -0.017 4.017 10 C -0.443 4.443 11 H 0.095 0.905 12 C -0.150 4.150 13 N -0.460 5.460 14 Si 0.750 3.250 15 H -0.192 1.192 16 H -0.204 1.204 17 H -0.192 1.192 18 C -0.160 4.160 19 C -0.097 4.097 20 H 0.065 0.935 21 H 0.107 0.893 22 H 0.065 0.935 23 H 0.151 0.849 24 H 0.163 0.837 25 H 0.230 0.770 26 H 0.091 0.909 27 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.070 -2.593 -0.015 8.477 hybrid contribution 0.815 -0.989 0.006 1.282 sum -7.255 -3.582 -0.009 8.091 Atomic orbital electron populations 1.22832 0.80037 1.02593 1.00588 1.85904 1.19894 1.27256 1.90407 1.18536 0.91565 0.83297 1.07442 1.20366 0.99278 0.91210 1.15509 1.20745 0.81427 0.98163 0.98941 1.45363 1.03666 1.06012 1.53656 1.76905 1.01706 1.07575 1.30086 1.25221 0.93278 0.96338 0.98956 1.17941 0.89298 0.92265 1.02230 1.18644 0.89053 0.94142 1.42502 0.90534 1.25766 1.00702 0.95424 0.93124 1.69449 1.25202 1.10969 1.40398 0.86085 0.79258 0.79975 0.79703 1.19159 1.20435 1.19164 1.18647 0.91895 0.85934 1.19482 1.19465 0.90401 0.95919 1.03930 0.93476 0.89340 0.93483 0.84949 0.83736 0.76973 0.90861 0.85337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 9.82 101.05 0.99 1.42 15 2 O -0.32 -5.70 10.50 -18.69 -0.20 -5.89 15 3 C 0.04 0.79 6.74 -38.55 -0.26 0.53 15 4 C -0.24 -4.29 8.98 -39.81 -0.36 -4.64 15 5 C 0.13 2.63 11.17 -16.59 -0.19 2.45 15 6 N -0.31 -7.61 3.87 -10.36 -0.04 -7.65 15 7 N -0.34 -8.76 12.54 30.89 0.39 -8.38 15 8 C 0.04 1.14 10.87 -16.92 -0.18 0.95 15 9 C -0.01 -0.21 5.97 -106.41 -0.64 -0.84 15 10 C -0.41 -10.93 9.35 -38.17 -0.36 -11.29 15 11 H 0.08 1.95 7.84 -52.49 -0.41 1.54 15 12 C 0.06 1.55 5.49 -17.33 -0.10 1.46 15 13 N -0.83 -20.94 10.31 55.53 0.57 -20.36 15 14 Si 0.92 18.87 29.56 -169.99 -5.02 13.85 15 15 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 16 H -0.28 -5.55 7.11 56.52 0.40 -5.15 15 17 H -0.27 -5.41 7.11 56.52 0.40 -5.01 15 18 C -0.05 -1.26 6.80 -83.80 -0.57 -1.83 15 19 C -0.08 -1.76 10.06 -39.04 -0.39 -2.15 15 20 H 0.05 0.53 7.68 -51.93 -0.40 0.13 15 21 H 0.09 0.85 8.14 -51.93 -0.42 0.43 15 22 H 0.05 0.52 7.69 -51.93 -0.40 0.13 15 23 H 0.13 1.84 6.39 -52.48 -0.34 1.50 15 24 H 0.15 2.34 8.06 -52.49 -0.42 1.92 15 25 H 0.21 5.64 5.72 -52.49 -0.30 5.34 15 26 H 0.28 6.47 8.31 -40.82 -0.34 6.13 15 27 H 0.13 2.83 8.06 -52.49 -0.42 2.41 15 LS Contribution 241.21 15.07 3.63 3.63 Total: -1.00 -29.43 241.21 -4.96 -34.39 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -2.25 Total: 4.36 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -2.04 Total: -13.95 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.92 Total: -36.39 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.20 Total: -5.89 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.85 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -29.43 -4.96 -34.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261270817.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.993 kcal (2) G-P(sol) polarization free energy of solvation -29.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds