Wall clock time and date at job start Mon Mar 30 2020 02:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.39817 * 125.39690 * 2 1 4 4 C 1.30224 * 110.12627 * 179.97438 * 3 2 1 5 5 C 1.46138 * 107.68187 * 359.97438 * 4 3 2 6 6 C 1.39484 * 133.78297 * 179.97438 * 5 4 3 7 7 C 1.40261 * 119.40143 * 180.02562 * 6 5 4 8 8 C 1.41329 * 120.00533 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00289 * 204.74530 * 8 7 6 10 10 C 1.39847 * 119.99932 * 24.74908 * 8 7 6 11 11 N 1.30899 * 119.99911 * 18.00592 * 10 8 7 12 12 Si 1.86797 * 119.99801 * 198.00781 * 10 8 7 13 13 H 1.48505 * 109.47165 * 90.00278 * 12 10 8 14 14 H 1.48503 * 109.47162 * 209.99409 * 12 10 8 15 15 H 1.48499 * 109.47385 * 329.99847 * 12 10 8 16 16 C 1.41156 * 119.99250 * 359.97438 * 7 6 5 17 17 C 1.36280 * 120.52450 * 0.02562 * 16 7 6 18 18 O 1.35917 * 119.86837 * 179.97438 * 17 16 7 19 19 C 1.36787 * 125.39390 * 179.97438 * 2 1 3 20 20 H 1.08999 * 109.47052 * 90.02369 * 1 2 3 21 21 H 1.08995 * 109.46959 * 210.02463 * 1 2 3 22 22 H 1.08996 * 109.47305 * 330.02384 * 1 2 3 23 23 H 1.08002 * 126.16183 * 180.02562 * 4 3 2 24 24 H 1.07996 * 120.29342 * 0.03168 * 6 5 4 25 25 H 0.97006 * 119.99665 * 179.97438 * 11 10 8 26 26 H 1.07992 * 119.74110 * 179.97438 * 16 7 6 27 27 H 0.96703 * 113.99814 * 89.99928 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2749 1.1397 0.0000 4 6 3.5312 0.7968 0.0005 5 6 3.5927 -0.6633 0.0016 6 6 4.6394 -1.5852 0.0020 7 6 4.3485 -2.9574 0.0025 8 6 5.3992 -3.9026 0.0024 9 1 5.2325 -4.8954 -0.3888 10 6 6.6548 -3.5524 0.5089 11 7 6.7778 -2.5090 1.2898 12 14 8.1564 -4.5736 0.0711 13 1 8.7796 -4.0332 -1.1639 14 1 9.1361 -4.5163 1.1856 15 1 7.7475 -5.9829 -0.1566 16 6 3.0062 -3.3941 0.0031 17 6 1.9848 -2.4919 0.0027 18 8 0.6972 -2.9272 0.0027 19 6 2.2573 -1.1151 0.0005 20 1 -0.3633 -0.0004 -1.0277 21 1 -0.3633 -0.8897 0.5142 22 1 -0.3634 0.8902 0.5134 23 1 4.3756 1.4701 0.0011 24 1 5.6646 -1.2455 0.0021 25 1 7.6487 -2.2664 1.6414 26 1 2.7869 -4.4515 0.0030 27 1 0.3246 -3.0528 0.8861 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261272824.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:01 Heat of formation + Delta-G solvation = 37.827210 kcal Electronic energy + Delta-G solvation = -14132.752163 eV Core-core repulsion = 11663.954749 eV Total energy + Delta-G solvation = -2468.797414 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.09116 -37.27378 -35.65185 -32.97228 -32.11382 -29.24237 -28.22618 -26.24720 -24.47313 -21.78463 -20.70648 -19.85162 -17.92902 -16.57523 -15.85414 -15.48971 -14.74605 -14.50017 -14.07130 -13.65587 -13.10772 -12.85043 -12.27381 -12.18412 -11.79717 -11.56127 -11.17993 -10.75112 -10.58718 -10.27108 -10.00974 -9.73979 -9.63070 -9.14872 -8.72657 -7.51608 -6.76449 -6.73135 -4.27886 2.09184 2.71116 3.08801 3.11961 3.14165 3.32298 3.47385 3.94710 4.51160 5.00621 5.25251 5.52192 5.68742 5.71246 5.81194 5.88805 6.21071 6.54190 6.79420 6.94982 7.09942 7.17965 7.35467 7.64829 7.79959 7.95465 8.09559 8.35200 8.44985 8.68056 8.85275 8.86872 10.21383 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.044867 B = 0.008921 C = 0.007617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.911063 B = 3138.034220 C = 3674.924730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.128 3.872 2 N -0.418 5.418 3 N -0.276 5.276 4 C 0.047 3.953 5 C -0.129 4.129 6 C -0.121 4.121 7 C 0.086 3.914 8 C -0.463 4.463 9 H 0.078 0.922 10 C 0.076 3.924 11 N -0.798 5.798 12 Si 0.908 3.092 13 H -0.268 1.268 14 H -0.279 1.279 15 H -0.263 1.263 16 C -0.162 4.162 17 C 0.082 3.918 18 O -0.506 6.506 19 C 0.013 3.987 20 H 0.053 0.947 21 H 0.076 0.924 22 H 0.069 0.931 23 H 0.183 0.817 24 H 0.129 0.871 25 H 0.280 0.720 26 H 0.111 0.889 27 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.456 1.318 -0.010 4.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 N -0.212 5.212 3 N -0.090 5.090 4 C -0.150 4.150 5 C -0.136 4.136 6 C -0.144 4.144 7 C 0.083 3.917 8 C -0.493 4.493 9 H 0.096 0.904 10 C -0.141 4.141 11 N -0.425 5.425 12 Si 0.732 3.268 13 H -0.193 1.193 14 H -0.204 1.204 15 H -0.187 1.187 16 C -0.184 4.184 17 C 0.035 3.965 18 O -0.313 6.313 19 C -0.097 4.097 20 H 0.071 0.929 21 H 0.094 0.906 22 H 0.087 0.913 23 H 0.199 0.801 24 H 0.146 0.854 25 H 0.091 0.909 26 H 0.129 0.871 27 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -5.214 2.407 -0.485 5.763 hybrid contribution 1.097 -1.101 0.448 1.618 sum -4.117 1.306 -0.038 4.319 Atomic orbital electron populations 1.21420 0.75996 1.02436 1.01605 1.47449 1.04463 1.01121 1.68198 1.76181 1.03049 1.10132 1.19594 1.24840 0.93960 0.94050 1.02168 1.19781 0.92689 0.92294 1.08804 1.20864 0.96952 0.91194 1.05397 1.17256 0.90628 0.92393 0.91394 1.19388 0.94112 0.99279 1.36511 0.90387 1.25815 1.00435 0.95257 0.92603 1.69839 1.25898 1.24200 1.22521 0.86323 0.80567 0.80884 0.78992 1.19317 1.20432 1.18739 1.21044 0.92419 0.97632 1.07266 1.16905 0.83077 0.87259 1.09296 1.84853 1.25964 1.88357 1.32137 1.18755 0.90980 0.88055 1.11916 0.92884 0.90576 0.91250 0.80054 0.85379 0.90907 0.87127 0.78102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.04 11.12 59.85 0.67 2.70 15 2 N -0.42 -8.83 4.04 -65.19 -0.26 -9.09 15 3 N -0.28 -5.87 12.39 31.91 0.40 -5.48 15 4 C 0.05 1.00 12.30 -15.07 -0.19 0.81 15 5 C -0.13 -3.10 6.35 -105.23 -0.67 -3.77 15 6 C -0.12 -3.10 8.75 -38.36 -0.34 -3.43 15 7 C 0.09 2.24 5.57 -106.85 -0.60 1.64 15 8 C -0.46 -11.86 9.03 -37.81 -0.34 -12.20 15 9 H 0.08 1.92 7.91 -52.49 -0.41 1.51 15 10 C 0.08 1.85 5.12 -17.35 -0.09 1.76 15 11 N -0.80 -20.07 10.97 55.54 0.61 -19.46 15 12 Si 0.91 18.27 29.59 -169.99 -5.03 13.24 15 13 H -0.27 -5.36 7.11 56.52 0.40 -4.96 15 14 H -0.28 -5.52 7.11 56.52 0.40 -5.12 15 15 H -0.26 -5.25 7.11 56.52 0.40 -4.85 15 16 C -0.16 -3.85 9.61 -39.18 -0.38 -4.22 15 17 C 0.08 1.84 6.67 -39.49 -0.26 1.58 15 18 O -0.51 -9.49 11.85 -19.48 -0.23 -9.72 15 19 C 0.01 0.31 6.88 -83.83 -0.58 -0.27 15 20 H 0.05 0.80 8.14 -51.93 -0.42 0.37 15 21 H 0.08 1.09 6.73 -51.93 -0.35 0.74 15 22 H 0.07 0.96 8.14 -51.93 -0.42 0.53 15 23 H 0.18 3.10 8.06 -52.49 -0.42 2.68 15 24 H 0.13 3.33 6.16 -52.49 -0.32 3.01 15 25 H 0.28 6.42 8.30 -40.82 -0.34 6.08 15 26 H 0.11 2.44 8.06 -52.49 -0.42 2.02 15 27 H 0.37 5.15 8.98 45.56 0.41 5.56 15 LS Contribution 242.03 15.07 3.65 3.65 Total: -1.00 -29.55 242.03 -5.14 -34.70 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -1.50 Total: 7.58 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -2.77 Total: -15.41 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.74 Total: -34.03 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.23 Total: -9.72 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -29.55 -5.14 -34.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272824.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.523 kcal (2) G-P(sol) polarization free energy of solvation -29.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds