Wall clock time and date at job start Mon Mar 30 2020 02:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.39817 * 125.39690 * 2 1 4 4 C 1.30224 * 110.12627 * 179.97438 * 3 2 1 5 5 C 1.46138 * 107.68187 * 359.97438 * 4 3 2 6 6 C 1.39484 * 133.78297 * 179.97438 * 5 4 3 7 7 C 1.40261 * 119.40143 * 180.02562 * 6 5 4 8 8 C 1.41329 * 120.00533 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00289 * 204.74530 * 8 7 6 10 10 C 1.39847 * 119.99932 * 24.74908 * 8 7 6 11 11 N 1.30899 * 119.99911 * 18.00592 * 10 8 7 12 12 Si 1.86797 * 119.99801 * 198.00781 * 10 8 7 13 13 H 1.48505 * 109.47165 * 90.00278 * 12 10 8 14 14 H 1.48503 * 109.47162 * 209.99409 * 12 10 8 15 15 H 1.48499 * 109.47385 * 329.99847 * 12 10 8 16 16 C 1.41156 * 119.99250 * 359.97438 * 7 6 5 17 17 C 1.36280 * 120.52450 * 0.02562 * 16 7 6 18 18 O 1.35917 * 119.86837 * 179.97438 * 17 16 7 19 19 C 1.36787 * 125.39390 * 179.97438 * 2 1 3 20 20 H 1.08999 * 109.47052 * 90.02369 * 1 2 3 21 21 H 1.08995 * 109.46959 * 210.02463 * 1 2 3 22 22 H 1.08996 * 109.47305 * 330.02384 * 1 2 3 23 23 H 1.08002 * 126.16183 * 180.02562 * 4 3 2 24 24 H 1.07996 * 120.29342 * 0.03168 * 6 5 4 25 25 H 0.97006 * 119.99665 * 179.97438 * 11 10 8 26 26 H 1.07992 * 119.74110 * 179.97438 * 16 7 6 27 27 H 0.96703 * 113.99814 * 89.99928 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2749 1.1397 0.0000 4 6 3.5312 0.7968 0.0005 5 6 3.5927 -0.6633 0.0016 6 6 4.6394 -1.5852 0.0020 7 6 4.3485 -2.9574 0.0025 8 6 5.3992 -3.9026 0.0024 9 1 5.2325 -4.8954 -0.3888 10 6 6.6548 -3.5524 0.5089 11 7 6.7778 -2.5090 1.2898 12 14 8.1564 -4.5736 0.0711 13 1 8.7796 -4.0332 -1.1639 14 1 9.1361 -4.5163 1.1856 15 1 7.7475 -5.9829 -0.1566 16 6 3.0062 -3.3941 0.0031 17 6 1.9848 -2.4919 0.0027 18 8 0.6972 -2.9272 0.0027 19 6 2.2573 -1.1151 0.0005 20 1 -0.3633 -0.0004 -1.0277 21 1 -0.3633 -0.8897 0.5142 22 1 -0.3634 0.8902 0.5134 23 1 4.3756 1.4701 0.0011 24 1 5.6646 -1.2455 0.0021 25 1 7.6487 -2.2664 1.6414 26 1 2.7869 -4.4515 0.0030 27 1 0.3246 -3.0528 0.8861 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261272824.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:00 Heat of formation + Delta-G solvation = 17.778625 kcal Electronic energy + Delta-G solvation = -14133.621535 eV Core-core repulsion = 11663.954749 eV Total energy + Delta-G solvation = -2469.666786 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.79318 -38.92307 -37.39881 -34.76046 -33.67198 -31.03847 -29.97711 -27.87684 -26.16722 -23.55034 -22.49281 -21.48381 -19.65547 -18.26980 -17.58858 -17.22641 -16.36960 -16.15901 -15.75633 -15.25078 -14.79748 -14.42328 -13.80922 -13.65855 -13.41101 -13.25940 -12.79594 -12.50888 -12.23179 -12.04414 -11.74883 -11.40850 -11.39010 -10.92728 -10.43775 -9.33318 -8.57756 -8.49507 -6.18292 0.32315 0.93371 1.44505 1.52453 1.56702 1.76077 1.79573 2.26871 2.69994 3.38071 3.68761 3.82147 4.01050 4.31069 4.48742 4.59169 4.69319 4.77369 4.99050 5.22240 5.35259 5.39764 5.53029 5.89503 5.97396 6.13835 6.40536 6.58532 6.78868 6.91475 6.97336 7.10804 8.41967 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.044867 B = 0.008921 C = 0.007617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.911063 B = 3138.034220 C = 3674.924730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.420 5.420 3 N -0.277 5.277 4 C 0.045 3.955 5 C -0.151 4.151 6 C -0.145 4.145 7 C 0.060 3.940 8 C -0.495 4.495 9 H 0.078 0.922 10 C 0.037 3.963 11 N -0.828 5.828 12 Si 0.979 3.021 13 H -0.265 1.265 14 H -0.271 1.271 15 H -0.259 1.259 16 C -0.177 4.177 17 C 0.096 3.904 18 O -0.500 6.500 19 C -0.001 4.001 20 H 0.063 0.937 21 H 0.093 0.907 22 H 0.092 0.908 23 H 0.214 0.786 24 H 0.113 0.887 25 H 0.287 0.713 26 H 0.121 0.879 27 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.183 1.357 -0.023 5.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.214 5.214 3 N -0.091 5.091 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.168 4.168 7 C 0.057 3.943 8 C -0.525 4.525 9 H 0.096 0.904 10 C -0.177 4.177 11 N -0.455 5.455 12 Si 0.801 3.199 13 H -0.190 1.190 14 H -0.195 1.195 15 H -0.183 1.183 16 C -0.199 4.199 17 C 0.048 3.952 18 O -0.311 6.311 19 C -0.112 4.112 20 H 0.082 0.918 21 H 0.111 0.889 22 H 0.111 0.889 23 H 0.231 0.769 24 H 0.131 0.869 25 H 0.098 0.902 26 H 0.139 0.861 27 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -5.993 2.457 -0.483 6.495 hybrid contribution 1.128 -1.059 0.472 1.617 sum -4.865 1.398 -0.010 5.062 Atomic orbital electron populations 1.21812 0.73129 1.04501 1.02953 1.47879 1.06093 1.00200 1.67189 1.76157 1.03134 1.10376 1.19396 1.25314 0.94914 0.93205 1.01804 1.20108 0.92954 0.93783 1.08944 1.20746 0.96739 0.91649 1.07627 1.17585 0.91800 0.92837 0.92078 1.19641 0.95402 0.99532 1.37956 0.90420 1.26615 1.02824 0.96364 0.91881 1.69896 1.26943 1.25556 1.23083 0.85244 0.76716 0.79209 0.78780 1.18961 1.19539 1.18306 1.21186 0.92199 0.98497 1.07987 1.16828 0.84114 0.86866 1.07382 1.84771 1.23985 1.87997 1.34307 1.18998 0.91402 0.89033 1.11756 0.91810 0.88883 0.88938 0.76950 0.86883 0.90245 0.86127 0.75084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.34 11.12 127.77 1.42 4.76 15 2 N -0.42 -16.84 4.04 -360.16 -1.45 -18.29 15 3 N -0.28 -11.28 12.39 -52.94 -0.66 -11.93 15 4 C 0.04 1.83 12.30 86.98 1.07 2.90 15 5 C -0.15 -7.27 6.35 -20.26 -0.13 -7.40 15 6 C -0.14 -7.60 8.75 23.06 0.20 -7.40 15 7 C 0.06 3.19 5.57 -21.31 -0.12 3.07 15 8 C -0.50 -25.99 9.03 23.42 0.21 -25.77 15 9 H 0.08 3.91 7.91 -2.91 -0.02 3.89 15 10 C 0.04 1.84 5.12 85.22 0.44 2.28 15 11 N -0.83 -42.44 10.97 21.81 0.24 -42.20 15 12 Si 0.98 37.54 29.59 68.60 2.03 39.57 15 13 H -0.26 -9.94 7.11 99.48 0.71 -9.23 15 14 H -0.27 -9.91 7.11 99.48 0.71 -9.21 15 15 H -0.26 -9.67 7.11 99.48 0.71 -8.96 15 16 C -0.18 -8.44 9.61 22.53 0.22 -8.23 15 17 C 0.10 4.20 6.67 22.33 0.15 4.35 15 18 O -0.50 -17.46 11.85 -92.62 -1.10 -18.56 15 19 C 0.00 -0.02 6.88 39.55 0.27 0.25 15 20 H 0.06 1.71 8.14 -2.39 -0.02 1.70 15 21 H 0.09 2.33 6.73 -2.39 -0.02 2.31 15 22 H 0.09 2.23 8.14 -2.39 -0.02 2.21 15 23 H 0.21 6.99 8.06 -2.91 -0.02 6.97 15 24 H 0.11 6.13 6.16 -2.91 -0.02 6.11 15 25 H 0.29 13.32 8.30 -92.70 -0.77 12.55 15 26 H 0.12 5.33 8.06 -2.91 -0.02 5.31 15 27 H 0.39 9.75 8.98 -74.06 -0.66 9.08 15 Total: -1.00 -63.21 242.03 3.34 -59.88 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.54 Total: 22.73 kcal Atomic # 6 Polarization: -34.92 SS G_CDS: 3.73 Total: -31.19 kcal Atomic # 7 Polarization: -70.56 SS G_CDS: -1.87 Total: -72.43 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -1.10 Total: -18.56 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.57 kcal Total: -63.21 3.34 -59.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272824.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.654 kcal (2) G-P(sol) polarization free energy of solvation -63.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds