Wall clock time and date at job start Mon Mar 30 2020 02:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34125 * 125.34180 * 2 1 4 4 C 1.35034 * 111.40808 * 179.97438 * 3 2 1 5 5 C 1.38756 * 125.97598 * 180.02562 * 4 3 2 6 6 H 1.08002 * 119.99891 * 179.97438 * 5 4 3 7 7 C 1.40227 * 120.00468 * 359.97438 * 5 4 3 8 8 N 1.30841 * 119.99827 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00395 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46909 * 89.99485 * 9 7 5 11 11 H 1.48494 * 109.47610 * 209.99935 * 9 7 5 12 12 H 1.48506 * 109.46909 * 330.00390 * 9 7 5 13 13 C 1.41293 * 108.04273 * 359.97438 * 4 3 2 14 14 N 1.32843 * 135.60249 * 180.02562 * 13 4 3 15 15 C 1.31387 * 122.15337 * 180.02562 * 14 13 4 16 16 C 1.38578 * 123.33094 * 359.95584 * 15 14 13 17 17 C 1.38975 * 120.23190 * 0.02562 * 16 15 14 18 18 N 1.38309 * 121.45292 * 179.97438 * 17 16 15 19 19 C 1.37719 * 125.34339 * 179.97438 * 2 1 3 20 20 H 1.08999 * 109.47412 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47302 * 120.02771 * 1 2 3 22 22 H 1.09006 * 109.46755 * 240.02558 * 1 2 3 23 23 H 0.96999 * 120.00243 * 180.02562 * 8 7 5 24 24 H 1.08000 * 118.33201 * 179.97438 * 15 14 13 25 25 H 1.07991 * 119.88354 * 179.97438 * 16 15 14 26 26 H 0.97002 * 119.99684 * 180.02562 * 18 17 16 27 27 H 0.96993 * 120.00032 * 0.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2828 1.0941 0.0000 4 6 3.5934 0.7689 0.0006 5 6 4.6549 1.6625 0.0012 6 1 5.6704 1.2947 0.0021 7 6 4.4094 3.0431 0.0008 8 7 3.1792 3.4887 -0.0007 9 14 5.8385 4.2460 0.0024 10 1 6.2189 4.5646 -1.3973 11 1 5.4356 5.4925 0.7018 12 1 6.9972 3.6372 0.7038 13 6 3.6947 -0.6404 0.0016 14 7 4.6897 -1.5205 0.0028 15 6 4.4765 -2.8170 0.0031 16 6 3.2104 -3.3804 0.0029 17 6 2.0829 -2.5679 0.0019 18 7 0.8076 -3.1032 0.0012 19 6 2.3036 -1.1234 0.0005 20 1 -0.3634 1.0276 -0.0005 21 1 -0.3634 -0.5143 -0.8897 22 1 -0.3633 -0.5135 0.8903 23 1 3.0093 4.4437 -0.0014 24 1 5.3313 -3.4770 0.0037 25 1 3.0995 -4.4546 0.0026 26 1 0.0353 -2.5163 0.0001 27 1 0.6855 -4.0654 0.0017 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261281467.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:25 Heat of formation + Delta-G solvation = -9.346836 kcal Electronic energy + Delta-G solvation = -14194.504229 eV Core-core repulsion = 11723.661194 eV Total energy + Delta-G solvation = -2470.843034 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.36411 -39.00066 -36.23352 -35.72581 -32.56075 -32.03199 -30.10702 -29.50116 -25.46188 -24.52438 -23.06959 -20.98596 -19.39191 -18.40184 -17.81861 -17.14880 -16.54056 -16.39644 -16.00403 -14.95168 -14.56464 -14.12510 -13.92065 -13.85519 -13.73838 -13.53839 -13.05189 -13.00625 -12.49344 -12.26505 -12.20586 -11.94018 -11.40386 -9.74411 -9.72992 -9.53027 -8.98352 -8.38647 -6.18545 0.33318 1.02328 1.35641 1.43388 1.54352 1.89828 2.11862 2.73337 2.84185 3.09766 3.54763 3.74735 4.23816 4.33952 4.48682 4.72731 4.75847 4.87295 4.88532 5.01278 5.05704 5.35739 5.47192 5.83813 5.96774 6.13783 6.37299 6.42218 6.70624 7.02458 7.11364 7.90214 8.01230 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.038985 B = 0.009880 C = 0.007916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.053795 B = 2833.281373 C = 3536.190902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 C -0.169 4.169 3 O -0.162 6.162 4 C 0.193 3.807 5 C -0.416 4.416 6 H 0.113 0.887 7 C 0.018 3.982 8 N -0.783 5.783 9 Si 1.013 2.987 10 H -0.253 1.253 11 H -0.255 1.255 12 H -0.253 1.253 13 C -0.144 4.144 14 N -0.481 5.481 15 C 0.049 3.951 16 C -0.277 4.277 17 C 0.233 3.767 18 N -0.847 5.847 19 C -0.188 4.188 20 H 0.067 0.933 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.305 0.695 24 H 0.154 0.846 25 H 0.147 0.853 26 H 0.401 0.599 27 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.090 -3.825 -0.002 5.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.217 4.217 3 O -0.058 6.058 4 C 0.138 3.862 5 C -0.443 4.443 6 H 0.131 0.869 7 C -0.202 4.202 8 N -0.408 5.408 9 Si 0.829 3.171 10 H -0.177 1.177 11 H -0.178 1.178 12 H -0.176 1.176 13 C -0.265 4.265 14 N -0.193 5.193 15 C -0.128 4.128 16 C -0.306 4.306 17 C 0.120 3.880 18 N -0.389 5.389 19 C -0.193 4.193 20 H 0.086 0.914 21 H 0.099 0.901 22 H 0.099 0.901 23 H 0.116 0.884 24 H 0.171 0.829 25 H 0.165 0.835 26 H 0.231 0.769 27 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -3.629 -2.852 0.003 4.616 hybrid contribution -0.615 -0.184 -0.008 0.642 sum -4.244 -3.037 -0.006 5.218 Atomic orbital electron populations 1.19971 0.83756 1.03136 1.02450 1.22330 0.94323 0.83073 1.22015 1.84156 1.15478 1.32824 1.73362 1.19388 0.82111 0.90399 0.94290 1.19262 0.93097 0.90897 1.41041 0.86921 1.27407 1.00960 1.00803 0.91063 1.69806 1.23278 1.18726 1.28971 0.84738 0.76195 0.75808 0.80317 1.17739 1.17839 1.17625 1.19884 0.89046 0.92883 1.24648 1.66194 1.36083 1.03439 1.13575 1.22037 0.96591 0.89758 1.04379 1.21081 0.91628 0.99617 1.18291 1.18305 0.87251 0.88091 0.94396 1.41860 1.03205 1.10109 1.83721 1.20824 0.95779 0.92760 1.09970 0.91408 0.90057 0.90063 0.88404 0.82878 0.83492 0.76930 0.75811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.30 9.05 71.23 0.64 -0.65 15 2 C -0.17 -8.47 7.38 25.56 0.19 -8.29 15 3 O -0.16 -9.39 8.77 -8.11 -0.07 -9.46 15 4 C 0.19 11.52 6.81 23.15 0.16 11.68 15 5 C -0.42 -23.23 9.28 22.88 0.21 -23.02 15 6 H 0.11 6.15 7.85 -2.91 -0.02 6.13 15 7 C 0.02 0.90 5.50 85.32 0.47 1.37 15 8 N -0.78 -40.04 11.97 21.89 0.26 -39.78 15 9 Si 1.01 36.22 29.56 68.60 2.03 38.25 15 10 H -0.25 -8.63 7.11 99.48 0.71 -7.93 15 11 H -0.25 -8.33 7.11 99.48 0.71 -7.63 15 12 H -0.25 -8.91 7.11 99.48 0.71 -8.21 15 13 C -0.14 -8.38 7.49 42.11 0.32 -8.06 15 14 N -0.48 -26.40 10.35 -184.21 -1.91 -28.30 15 15 C 0.05 2.23 11.04 84.84 0.94 3.17 15 16 C -0.28 -11.05 9.95 22.53 0.22 -10.83 15 17 C 0.23 9.68 7.04 40.35 0.28 9.96 15 18 N -0.85 -24.67 9.05 -47.42 -0.43 -25.10 15 19 C -0.19 -9.66 6.45 -18.98 -0.12 -9.78 15 20 H 0.07 2.33 8.14 -2.39 -0.02 2.31 15 21 H 0.08 2.44 7.88 -2.39 -0.02 2.42 15 22 H 0.08 2.43 7.89 -2.38 -0.02 2.42 15 23 H 0.30 13.53 8.30 -92.71 -0.77 12.76 15 24 H 0.15 5.71 8.06 -2.91 -0.02 5.69 15 25 H 0.15 4.49 8.06 -2.92 -0.02 4.47 15 26 H 0.40 10.52 6.86 -92.71 -0.64 9.88 15 27 H 0.41 8.90 8.86 -92.71 -0.82 8.08 15 Total: -1.00 -71.41 242.92 2.96 -68.45 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: -0.23 Total: 30.39 kcal Atomic # 6 Polarization: -37.75 SS G_CDS: 3.31 Total: -34.44 kcal Atomic # 7 Polarization: -91.11 SS G_CDS: -2.07 Total: -93.18 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.07 Total: -9.46 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 2.03 Total: 38.25 kcal Total: -71.41 2.96 -68.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261281467.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.100 kcal (2) G-P(sol) polarization free energy of solvation -71.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds