Wall clock time and date at job start Mon Mar 30 2020 02:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28353 * 124.28083 * 2 1 4 4 C 1.32756 * 111.73261 * 180.02562 * 3 2 1 5 5 C 1.40747 * 126.91493 * 179.97438 * 4 3 2 6 6 H 1.07999 * 120.00100 * 186.05706 * 5 4 3 7 7 C 1.39955 * 119.99888 * 6.06171 * 5 4 3 8 8 N 1.30861 * 120.00155 * 184.14948 * 7 5 4 9 9 Si 1.86797 * 120.00192 * 4.14896 * 7 5 4 10 10 H 1.48503 * 109.47356 * 180.02562 * 9 7 5 11 11 H 1.48509 * 109.46889 * 300.00082 * 9 7 5 12 12 H 1.48501 * 109.47428 * 59.99749 * 9 7 5 13 13 C 1.47401 * 106.16998 * 0.23946 * 4 3 2 14 14 C 1.38881 * 135.28835 * 179.73021 * 13 4 3 15 15 C 1.38416 * 119.51868 * 180.02562 * 14 13 4 16 16 O 1.35933 * 119.89143 * 179.97438 * 15 14 13 17 17 C 1.39227 * 120.21658 * 0.02562 * 15 14 13 18 18 C 1.37729 * 120.65845 * 359.56026 * 17 15 14 19 19 C 1.37361 * 124.28725 * 180.02562 * 2 1 3 20 20 H 1.08997 * 109.47391 * 89.98054 * 1 2 3 21 21 H 1.09008 * 109.46837 * 209.97406 * 1 2 3 22 22 H 1.09000 * 109.47399 * 329.97564 * 1 2 3 23 23 H 0.97000 * 120.00028 * 354.83864 * 8 7 5 24 24 H 1.08001 * 120.24006 * 0.02562 * 14 13 4 25 25 H 0.96707 * 114.00030 * 90.00018 * 16 15 14 26 26 H 1.07999 * 119.67355 * 179.97438 * 17 15 14 27 27 H 1.08000 * 120.05254 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1879 1.0606 0.0000 4 6 3.4838 0.7721 -0.0006 5 6 4.5535 1.6869 -0.0012 6 1 5.5683 1.3310 -0.1003 7 6 4.3020 3.0577 0.1266 8 7 5.2879 3.9143 0.0446 9 14 2.5590 3.6647 0.4143 10 1 2.5607 5.1465 0.5131 11 1 1.6955 3.2457 -0.7190 12 1 2.0347 3.0845 1.6768 13 6 3.5769 -0.6989 -0.0069 14 6 4.6144 -1.6222 -0.0149 15 6 4.3231 -2.9753 -0.0197 16 8 5.3326 -3.8856 -0.0281 17 6 2.9995 -3.4072 -0.0170 18 6 1.9644 -2.4987 -0.0005 19 6 2.2388 -1.1349 -0.0005 20 1 -0.3634 0.0003 -1.0276 21 1 -0.3633 -0.8903 0.5135 22 1 -0.3634 0.8897 0.5142 23 1 6.2014 3.5967 -0.0296 24 1 5.6410 -1.2867 -0.0174 25 1 5.6286 -4.1529 0.8529 26 1 2.7822 -4.4651 -0.0212 27 1 0.9413 -2.8445 0.0010 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261285824.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:36 Heat of formation + Delta-G solvation = 29.766828 kcal Electronic energy + Delta-G solvation = -14158.692246 eV Core-core repulsion = 11689.545308 eV Total energy + Delta-G solvation = -2469.146939 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 218.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.89151 -38.07878 -35.04285 -34.04393 -32.15369 -29.43670 -28.50017 -27.55136 -23.82945 -22.46106 -21.19233 -19.74381 -18.04087 -17.69977 -16.15622 -15.53103 -15.05067 -14.73962 -14.03341 -13.72184 -13.50031 -12.63868 -12.55390 -12.35028 -12.13277 -11.84529 -11.11869 -11.09394 -10.68090 -10.42687 -9.91024 -9.59087 -9.36554 -8.82506 -8.46309 -7.77322 -7.25356 -7.08486 -4.50305 1.77286 2.07590 3.36967 3.40145 3.67050 3.92574 4.02626 4.32906 4.38588 4.81651 5.21168 5.28705 5.30534 5.51860 5.66064 5.81012 5.91916 6.03983 6.18043 6.40240 6.59819 6.86016 7.00545 7.12281 7.35639 7.59929 7.90849 8.21122 8.24204 8.40750 8.79176 9.71044 10.15140 Molecular weight = 218.08amu Principal moments of inertia in cm(-1) A = 0.032828 B = 0.011296 C = 0.008473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.727210 B = 2478.123380 C = 3303.967697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.349 5.349 3 N -0.423 5.423 4 C 0.213 3.787 5 C -0.473 4.473 6 H 0.084 0.916 7 C 0.050 3.950 8 N -0.821 5.821 9 Si 1.112 2.888 10 H -0.310 1.310 11 H -0.267 1.267 12 H -0.283 1.283 13 C -0.164 4.164 14 C -0.049 4.049 15 C 0.014 3.986 16 O -0.499 6.499 17 C -0.104 4.104 18 C -0.148 4.148 19 C 0.088 3.912 20 H 0.059 0.941 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.282 0.718 24 H 0.121 0.879 25 H 0.372 0.628 26 H 0.119 0.881 27 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.825 -9.422 1.855 11.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.133 5.133 3 N -0.254 5.254 4 C 0.064 3.936 5 C -0.513 4.513 6 H 0.102 0.898 7 C -0.170 4.170 8 N -0.447 5.447 9 Si 0.942 3.058 10 H -0.240 1.240 11 H -0.193 1.193 12 H -0.210 1.210 13 C -0.173 4.173 14 C -0.069 4.069 15 C -0.032 4.032 16 O -0.307 6.307 17 C -0.125 4.125 18 C -0.170 4.170 19 C -0.032 4.032 20 H 0.077 0.923 21 H 0.090 0.910 22 H 0.098 0.902 23 H 0.094 0.906 24 H 0.139 0.861 25 H 0.224 0.776 26 H 0.137 0.863 27 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.710 -7.077 1.366 10.554 hybrid contribution 1.629 -2.291 0.318 2.829 sum -6.081 -9.368 1.683 11.295 Atomic orbital electron populations 1.21560 0.76393 1.03038 1.02019 1.44503 1.05219 1.00768 1.62766 1.72737 1.02946 1.10217 1.39482 1.20367 0.90295 0.88555 0.94402 1.19737 0.92894 0.92145 1.46539 0.89826 1.27308 1.07426 0.92704 0.89596 1.70648 1.01901 1.38262 1.33867 0.82724 0.71813 0.71889 0.79350 1.24003 1.19302 1.21016 1.19889 0.91912 0.94996 1.10454 1.20549 0.98536 0.90998 0.96819 1.17935 0.86670 0.87401 1.11217 1.84881 1.52629 1.60615 1.32588 1.20817 0.91688 0.98638 1.01369 1.19580 0.98386 0.89120 1.09946 1.19212 0.91731 0.89502 1.02752 0.92264 0.90977 0.90216 0.90649 0.86120 0.77556 0.86295 0.86879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.79 11.23 59.85 0.67 2.46 15 2 N -0.35 -7.77 3.74 -65.45 -0.25 -8.01 15 3 N -0.42 -10.93 7.18 33.35 0.24 -10.69 15 4 C 0.21 5.74 6.68 -82.79 -0.55 5.18 15 5 C -0.47 -13.19 9.86 -37.99 -0.37 -13.56 15 6 H 0.08 2.32 8.05 -52.49 -0.42 1.90 15 7 C 0.05 1.37 5.52 -17.32 -0.10 1.28 15 8 N -0.82 -22.78 13.66 55.55 0.76 -22.02 15 9 Si 1.11 27.47 25.92 -169.99 -4.41 23.06 15 10 H -0.31 -7.44 7.11 56.52 0.40 -7.04 15 11 H -0.27 -6.59 6.77 56.52 0.38 -6.21 15 12 H -0.28 -6.99 7.11 56.52 0.40 -6.59 15 13 C -0.16 -3.94 6.42 -104.99 -0.67 -4.61 15 14 C -0.05 -1.04 10.02 -39.28 -0.39 -1.43 15 15 C 0.01 0.26 6.70 -39.15 -0.26 0.00 15 16 O -0.50 -8.03 13.50 -19.53 -0.26 -8.30 15 17 C -0.10 -1.77 9.95 -39.40 -0.39 -2.16 15 18 C -0.15 -2.64 9.95 -39.44 -0.39 -3.03 15 19 C 0.09 1.91 6.84 -84.12 -0.58 1.34 15 20 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 21 H 0.07 0.92 8.08 -51.92 -0.42 0.50 15 22 H 0.08 1.21 8.14 -51.93 -0.42 0.79 15 23 H 0.28 7.52 8.72 -40.82 -0.36 7.16 15 24 H 0.12 2.48 8.06 -52.49 -0.42 2.05 15 25 H 0.37 4.09 9.06 45.56 0.41 4.50 15 26 H 0.12 1.66 8.06 -52.49 -0.42 1.24 15 27 H 0.11 1.64 8.06 -52.49 -0.42 1.22 15 LS Contribution 242.54 15.07 3.66 3.66 Total: -1.00 -31.88 242.54 -5.02 -36.90 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -1.71 Total: -0.05 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -3.04 Total: -14.54 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.75 Total: -40.73 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.26 Total: -8.30 kcal Atomic # 14 Polarization: 27.47 SS G_CDS: -4.41 Total: 23.06 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -31.88 -5.02 -36.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261285824.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.668 kcal (2) G-P(sol) polarization free energy of solvation -31.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds